Structure–property relationships in dicyanopyrazinoquinoxalines and their hydrogen-bonding-capable dihydropyrazinoquinoxalinedione derivatives

• Tural N. Akhmedov,
• Ajeet Kumar,
• Daken J. Starkenburg,
• Kyle J. Chesney,
• Khalil A. Abboud,
• Novruz G. Akhmedov,
• Jiangeng Xue and
• Ronald K. Castellano

Beilstein J. Org. Chem. 2024, 20, 1037–1052, doi:10.3762/bjoc.20.92

• their profound implications on device performance [1]. Among these interactions, hydrogen bonding (H-bonding, HB) as a highly directional noncovalent interaction can influence the structural, electronic, and optoelectronic properties of bulk materials [2][3]. Hydrogen bonding plays a crucial role in

• and charge injection/extraction processes [7]. The additional merits of H-bonding designs in organic optoelectronic materials include higher thermal stability, synergistic stabilizing effects with π-stacking interactions, etc. [8]. Acenes and N-heteroacenes are two prominent π-conjugated scaffolds for

• perylenebisimide (PBI) components connected laterally through H-bonding and self-assembled orthogonally through π–π interactions [13]. Mixtures of PBI and OPV successfully exhibited ambipolar charge transport depending on processing conditions as a result of the co-assembled morphology. Our group utilized a

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• -responsive switchable tweezers are based on an H-bonding motif that can establish recognition interactions with the anionic species. One of the first examples was developed by Sessler, Jeppesen, and co-workers with a calix[4]pyrrole switching unit [68]. Calix[4]pyrrole tweezers 33 are functionalized by four

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• mechanism to a <1st-order dependence on catalyst, which could indicate a competing alcohol or H-bonding driven mechanism. In CD3OD, first-order-catalyst dependence is maintained. The entropy of activation reveals an organized transition state (−42.1 cal/mol·K) which would be consistent with the mechanism in

• MeOH within the transition state; rate enhancements with protic co-solvents point to the importance of H-bonding clusters. • Significant slow-down and primary isotope effects observed with MeOH versus MeOD; such KIE’s are typically used to support rate determining protodeauration, but in this case do

• not correspond to alkylgold buildup. In protic solvents perhaps the strength of the H-bonding network controls the rate of reaction [82]. • Stronger donor ligands that would enhance protodeauration do not increase the rate of reaction. • Rates correlate most significantly with nucleophile effects

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• (E1/2red[IrIV/*IrIII] = −0.96 V vs SCE) would not promote the reduction of 44 (−1.25 V vs SCE) [56] (Scheme 10). Interestingly, the role of H-bonding in substrate activation was not considered. To explain the observed transformation, it was suggested that the IrIII-photocatalyst acted as a

• , the authors proposed that (R)-TRIP-Li has the capability to engage enamide 51 through H-bonding and NHPI ester 3 through Li-promoted Lewis acid activation, acting as a pocket that facilitates the formation of charge-transfer complex 52 (Scheme 11B). This complex can be excited either by direct

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• approach to acenaphthylene systems. Suggested amination products 6 and two resonance forms of dianion 7. Targeted dipyridoacenaphthylene 8. Molecular and crystal structure of salt 5·HCl·2H2O is strongly dominated by severe H-bonding (blue dotted lines) and π-stacking (one preorganized layer along the c

• overlap (с). Again, π-stacking and H-bonding (blue dotted lines) strongly dominate in this structure. Fragment of the crystal packing of neutral dipyridoacenaphthene 5 showing self-association via multiple C–H…N contacts (blue dotted lines) between three independent molecules. Structure of

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• , particular three positively charged residues, R101, K106, and K116, maintained strong H-bonds that have been also established in the X-ray structure-based MD simulation [51]. Some of these residues are absent as the most contributing to H-bonding in the less stable complexes (both last windows of the pulling

• away and pulling in processes). At the same time, the essential difference between the H-bonding pattern observed in the unrestrained MD simulation of the X-ray structure is that there were several non-charged residues (N8, A17, Y84) among the top residues contributing to H-bonds, while almost

• potential of non-purely electrostatics dominance in the protein–GAG interactions. The more detailed analysis of the GAG recognition in this system in near-native states points out to the complexity of free energy landscape but at the same identifies the key charged H-bonding contributors to the GAG binding

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• studied hydrazones. Crystal, data collection and refinement parameters for hdz-CH3 and hdz-NO2.a H-bonding parameters for hdz-CH3 and hdz-NO2. Supporting Information Supporting Information contains Fourier difference maps (Figure S1), Hirshfeld surface analyses (Figures S2 and S3), optimized calculated

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• and acceptor molecules (N···F and N···H bonding when using the acceptor Y6), as well as an induced dipole moment in the molecule for increased work function tuning of the cathode. The use of benzyl and pentafluorobenzyl substituents was to evaluate the impact of H vs F on the electrochemical

Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• stereoselectivity is also explained. Keywords: asymmetric; aza-Friedel–Crafts reaction; H-bonding; organocatalysis; stereoselectivity; Introduction The ease of a chemical transformation depends on the thermodynamic instability of a chemical bond owing to its fast cleavage under mild reaction conditions. A C–H

• the reaction partners in a highly ordered three dimensional transition state through noncovalent interactions (like H-bonding, π–π interactions) thus promoting the stereoselective reaction. Examples of covalent bonding organocatalysts are amines [6][7], N-heterocyclic carbenes [8][9], phosphines [10

• –Crafts reaction has also been explored under the influence of organocatalysis. However, here organocatalysts act as Brønsted acids which form noncovalent interactions (H-bonding) with the imine nitrogen to enhance the electrophilicity of the imine component. In addition, by selecting suitable imine

Functionalization of imidazole N-oxide: a recent discovery in organic transformations

• Koustav Singha,
• Imran Habib and
• Mossaraf Hossain

Beilstein J. Org. Chem. 2022, 18, 1575–1588, doi:10.3762/bjoc.18.168

• , the authors revealed the product 4a as E-isomer due to the strong intramolecular H-bonding. It was also observed that the labile acetal group in the product 4g remained unaffected during the reaction process under the standard conditions. Imidazole N-oxides reacted with ethyl cyanoacetate to produce

Heteroleptic metallosupramolecular aggregates/complexation for supramolecular catalysis

• Prodip Howlader and
• Michael Schmittel

Beilstein J. Org. Chem. 2022, 18, 597–630, doi:10.3762/bjoc.18.62

• , which entailed the quantitative formation of the edge-directed molecular prism 15 (Figure 3). The adequate length of the ditopic clip 13 constrained the urea triangle from intersupramolecular H-bonding. Thus, the urea moieties in this newly assembled 3D architecture were freely available for

• interactions with appropriate guest molecules through H-bonding. Different organic molecules, such as nitroolefins, capable of forming H-bonding with the urea moieties inside the cavity were investigated in water for their ability to encapsulate in the cavity under heterogeneous conditions. Successful binding

• . For this purpose, they have chosen the ditopic bisurea “strut” 12 (Figure 3), which generated a 2D discrete molecular triangle 14 in the presence of an equimolar amount of the cis-(tmen)Pd(NO3)2 acceptor 5 [59]. In order to prevent the urea moieties on the triangle to get engaged in intermolecular H

A resorcin[4]arene hexameric capsule as a supramolecular catalyst in elimination and isomerization reactions

• Tommaso Lorenzetto,
• Fabrizio Fabris and
• Alessandro Scarso

Beilstein J. Org. Chem. 2022, 18, 337–349, doi:10.3762/bjoc.18.38

• series of control experiments supported in all cases the evidence that the reaction is not just promoted by the acidity of 16 or its H-bonding properties, but that a combination of weak Brønsted acidity together with the presence of an accessible electron-rich cavity that favors the stabilization of the

• recorded after 64 h at room temperature, while A and B were recorder right after sample preparation. Resorcin[4]arene 1 forming the corresponding hexameric capsule 16 and the species used for control experiments like 4-n-hexylresorcinol (2) to mimic the H-bonding properties of the capsule

Organocatalytic asymmetric nitroso aldol reaction of α-substituted malonamates

• Ekta Gupta,
• Narendra Kumar Vaishanv,
• Sandeep Kumar,
• Raja Krishnan Purshottam,
• Ruchir Kant and
• Kishor Mohanan

Beilstein J. Org. Chem. 2022, 18, 217–224, doi:10.3762/bjoc.18.25

• on the screening of various bifunctional H-bonding catalysts, and in this regard, the reaction catalyzed by quinine-derived thiourea catalyst 3b furnished the product 4a in 55% yield and 71% ee (Table 1, entry 5). The other enantiomer was obtained when the reaction was carried out using the

Green synthesis of C5–C6-unsubstituted 1,4-DHP scaffolds using an efficient Ni–chitosan nanocatalyst under ultrasonic conditions

• Soumyadip Basu,
• Sauvik Chatterjee,
• Suman Ray,
• Suvendu Maity,
• Prasanta Ghosh,
• Asim Bhaumik and
• Chhanda Mukhopadhyay

Beilstein J. Org. Chem. 2022, 18, 133–142, doi:10.3762/bjoc.18.14

• H-bonding. The presence of diffraction peaks at 2Θ 9.2 and 19.7 (in degree) indicated the presence of a chitosan framework [28], whereas the other minor diffraction peaks were observed due to the presence of Ni(II). From the SEM and TEM images of the catalyst, we confirmed the morphological features

N-Sulfinylpyrrolidine-containing ureas and thioureas as bifunctional organocatalysts

• Viera Poláčková,
• Dominika Krištofíková,
• Boglárka Némethová,
• Renata Górová,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2021, 17, 2629–2641, doi:10.3762/bjoc.17.176

• , including enantioselective H-bonding-catalyzed additions to aliphatic N-Boc-imines with high stereoselectivity [22]. A broad range of β-aminonitroolefins were reduced to chiral β-aminonitroalkanes in high yields and excellent enantioselectivities using trichlorosilane as a reducing agent and an N

Halides as versatile anions in asymmetric anion-binding organocatalysis

• Lukas Schifferer,
• Martin Stinglhamer,
• Kirandeep Kaur and
• Olga García Macheño

Beilstein J. Org. Chem. 2021, 17, 2270–2286, doi:10.3762/bjoc.17.145

• reported a family of chiral helical tetratriazoles 82 as a new class of anion-binding catalysts, which can be considered as supramolecular anion-binding catalysts (Scheme 18) [22]. Not only is the increased H-bonding network in multidentate 82 beneficial for giving a firm control over both regio- and

• examples, and the advance of anion-binding-catalyzed strategies involving more complex H-bonding networks clearly highlight that it is indeed possible to mimic enzyme-like structures with small-molecule catalysts for asymmetric synthesis. Conclusion In the past two decades, tremendous advances in the field

• , in which differentiation between classical H-bonding to neutral substrates and the binding to anionic species was delineated, anion-binding interactions became more prominent and started being considered in the design of new syntheses and catalytic approaches. In this context, the emphasis was to

Enantioenriched α-substituted glutamates/pyroglutamates via enantioselective cyclopropenimine-catalyzed Michael addition of amino ester imines

• Zara M. Seibel,
• Jeffrey S. Bandar and
• Tristan H. Lambert

Beilstein J. Org. Chem. 2021, 17, 2077–2084, doi:10.3762/bjoc.17.134

• reported [45], for which a detailed transition state model was developed. In that study, it was determined that the reaction proceeds via several competing low-energy transition states involving both O–H and N–H enolate binding modes, E and Z enolate isomers, and a range of H-bonding and other noncovalent

A study on selective transformation of norbornadiene into fluorinated cyclopentane-fused isoxazolines

• Zsanett Benke,
• Attila M. Remete and
• Loránd Kiss

Beilstein J. Org. Chem. 2021, 17, 2051–2066, doi:10.3762/bjoc.17.132

• observed selectivities in metathesis reactions, H-bonding interactions between chloride ligands as H-bond acceptors and OH or NH functions in the metathesis intermediate appear to be determining [35][36]. Selectivity derived from chelation is considered to be an another important contributor. Through the

Icilio Guareschi and his amazing “1897 reaction”

• Gian Cesare Tron,
• Alberto Minassi,
• Giovanni Sorba,
• Mara Fausone and
• Giovanni Appendino

Beilstein J. Org. Chem. 2021, 17, 1335–1351, doi:10.3762/bjoc.17.93

• ⋅mol−1) and favored over abstraction by a hydroperoxy radical, which would be only exothermic by 2 kcal⋅mol−1. The exothermicity of the hydrogen abstraction reaction is reduced with stabilized radicals, which have weaker C–H bonding. In this case, trapping by dissolved oxygen competes, generating a

Synthetic accesses to biguanide compounds

• Oleksandr Grytsai,
• Cyril Ronco and
• Rachid Benhida

Beilstein J. Org. Chem. 2021, 17, 1001–1040, doi:10.3762/bjoc.17.82

• intramolecular H-bond character. The second protonation rather takes place on the N3 nitrogen atom, causing planar character disruption and preventing H-bonding (Figure 2) [1]. Biguanide derivatives often display low melting points (mp = 136 °C for simple biguanide). However, above 130 °C, a concomitant thermal

Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

DNA with zwitterionic and negatively charged phosphate modifications: Formation of DNA triplexes, duplexes and cell uptake studies

• Yongdong Su,
• Maitsetseg Bayarjargal,
• Tracy K. Hale and
• Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2021, 17, 749–761, doi:10.3762/bjoc.17.65

• cell-based applications. Illustration of H-bonding in a DNA duplex and a parallel triplex. A) Depiction of Watson–Crick base-paring (left: T-A and right: C-G); B) parallel triple helices: pyrimidine-rich third strand interactions are stabilised by Hoogsteen hydrogen bonds (the duplex is in black, TFO

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• -aminobutyric acid associate with membrane-bound protein receptors and trigger changes in receptor shape and activity with subsequent signaling across the membrane. Noncovalent H-bonding and van der Waals interactions are the basis for the selective molecular recognition between a G-coupled protein receptor and

Using multiple self-sorting for switching functions in discrete multicomponent systems

• Amit Ghosh and
• Michael Schmittel

Beilstein J. Org. Chem. 2020, 16, 2831–2853, doi:10.3762/bjoc.16.233

• undemanding building blocks. The plethora of self-sorting systems depends on either the geometric fit of their global shapes and/or matching of their local interactions. Various noncovalent interactions, such as H‐bonding [8][9], metal–ligand coordination [10][11][12][13], electrostatic interactions [14], π

• . Some selected self-sorting outcomes and their qualitative and quantitative assessment. Illustration of an integrative vs a non-integrative self-sorting. The pH-driven four-component 2-fold completive self-sorting based on host–guest chemistry. (a) The monomers 5 and 6 and their H-bonding array. (b) The

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• . One of the challenges in the bio-anion detection is that the sensory probes have to be effective under physiological conditions. The highly polar nature of the aqueous media considerably weakens supramolecular interactions such as H-bonding and electrostatic interactions and as a result, it is in