Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• , only the double-substituted product could be found. No reaction was observed when the reaction temperature was lowered to 0 °C. This could be due to the double activation of the 5-position, despite the fact that bromine is a better leaving group than chlorine. Both positions might be influenced by the

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• -cubanes (Scheme 9B) [51]. Partial deprotection of diester 88 led to acid 89 as a key intermediate and in situ activation of the acid as the hypervalent iodine complex enabled a photoredox decarboxylative amination to 1,2-cubane 90. Alternatively, conversion of the acid moiety of 89 to redox active esters

• haloalkylation with alkyl iodides (Scheme 14A) [27][47]. This reaction can be performed either under photoredox catalysis conditions or without the need for an initiator, depending on the used alkyl iodide. For selected examples, the radical initiator Et3B could also be used. Activation by photoredox catalysis

• was developed by Anderson and co-workers and was shown to be the more versatile than initiator-free activation. Both initiator-free and Et3B-initiated reactions only tolerated electrophilic radicals (to 134a and 134e), while photoredox catalysis also tolerated electron-rich radicals (to 134b). The

Ortho-ester-substituted diaryliodonium salts enabled regioselective arylocyclization of naphthols toward 3,4-benzocoumarins

• Ke Jiang,
• Cheng Pan,
• Limin Wang,
• Hao-Yang Wang and
• Jianwei Han

Beilstein J. Org. Chem. 2024, 20, 841–851, doi:10.3762/bjoc.20.76

• have been employed in benzocyclization and arylocyclization reactions, enabling intramolecular cyclization by forming aromatic or heterocyclic rings as a part of cyclic structures [8]. In these reactions, the dual activation of a C–I bond and vicinal C–H bonds/functional groups features a distinct

• advantage, facilitating the formation of two or more chemical bonds in a step-economic manner [9][10][11][12][13]. In a prior study, we reported a palladium-catalyzed efficient activation of both C–I bond and the adjacent C–H bond of diaryliodonium salts in the formation of 4,5-benzocoumarin derivatives

• [31][32][33]. Building on our great interest in ortho-functionalized diaryliodonium salts and their dual activation capabilities, we sought to incorporate carboxylic ester groups into the structures of ortho-substituted diaryliodonium salts to explore their properties and reactivity. Our previous

Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• the byproduct triphenylphosphine oxide, necessitating chromatography which resulted in some hydrolysis. There are a number of catalytic activation strategies for Appel or Mitsunobu reactions such as those described by the Denton group [30], and Rutjes and co-workers [31], and while these may prove

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• C–H bonds into the alkene π-bond [30]. Before reviewing polar hydrochlorination reactions in detail, it is worth mentioning several statements which were made in the Sergeev review [12]: a) The activation energy for an anti-Markovnikov addition is at least by 30 kJ mol−1 higher than for normal

• addition. Therefore, anti-Markovnikov products are generally not observed. b) In contrast to the reactions with HBr (peroxide effect) [31][32], the formation of anti-Markovnikov products is low even in the presence of peroxides or photochemical activation. For instance, Whitmore and co-workers observed

• concerning the polar hydrochlorinations the activation energy for an anti-Markovnikov addition is at least by 30 kJ mol−1 higher than for normal addition. Therefore, the formation of the anti-Markovnikov product via purely cationic intermediates is never observed. The only report for the formation of the

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• been discovered. In this review, we outline the silent gene activation methods, including the authors’ efforts (Figure 1). Review Artificial methods Several target-oriented methods focusing on specific biosynthetic genes and regulatory factors and artificial methods have been reported to activate

• [46]. Finally, several studies have reported the modulation of secondary metabolic activation in actinomycetes using small molecules. For example, Ochi et al. proposed the “ribosome engineering” technique, in which actinomycetes are cultured with antibiotics to activate secondary metabolism by

• ribosomal S12 protein mutation results in increased expression of translation factors, which leads to enhanced protein synthesis in secondary metabolism [47]. Liu et al. reported activation of the production of bohemamines 11–13, bacterial alkaloids containing a pyrrolizidine core with two unusual methyl

Evaluation of the enantioselectivity of new chiral ligands based on imidazolidin-4-one derivatives

• Jan Bartáček,
• Karel Chlumský,
• Jan Mrkvička,
• Lucie Paloušová,
• Miloš Sedlák and
• Pavel Drabina

Beilstein J. Org. Chem. 2024, 20, 684–691, doi:10.3762/bjoc.20.62

• chiral metal complex catalyst but also as an enantioselective organocatalyst [17]. Accordingly, its application in enantioselective organocatalysis, particularly in asymmetric reactions through “enamine activation”, warrants further investigation. Results and Discussion The corresponding copper(II

• -tetrazole, which was successfully used in many asymmetric reactions via “enamine activation”, especially in asymmetric aldol reactions [20][21][22][23]. Moreover, compound IV was previously included in a study dealing with asymmetric cascade reactions (based on aldol reactions) of aldehydes with α-keto

Regioselective quinazoline C2 modifications through the azide–tetrazole tautomeric equilibrium

• Dāgs Dāvis Līpiņš,
• Andris Jeminejs,
• Una Ušacka,
• Anatoly Mishnev,
• Māris Turks and
• Irina Novosjolova

Beilstein J. Org. Chem. 2024, 20, 675–683, doi:10.3762/bjoc.20.61

• reactions of substituted anilines VI, VII or N-arylamidines VIII are frequently employed for synthesizing C2-substituted quinazolines (Scheme 1), thereby influencing the spatial arrangement of the desired substituents [13][14]. Moreover, there have been recent advancements in efficient C–H activation

Chemical and biosynthetic potential of Penicillium shentong XL-F41

• Ran Zou,
• Xin Li,
• Xiaochen Chen,
• Yue-Wei Guo and
• Baofu Xu

Beilstein J. Org. Chem. 2024, 20, 597–606, doi:10.3762/bjoc.20.52

• , given the application of suitable activation techniques. Results and Discussion Compound isolation and structure elucidation To activate the silent BGCs in Penicillium shentong XL-F41, we conducted small-scale fermentations using various media. Analysis revealed that HPLC peaks, which correspond to

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• ) linkers on graphene. The activation barrier between two bi-stable conformations exhibited by PASE is confirmed to be based on the steric hindrance effect between a hydrogen on the pyrene group and a hydrogen on the alkyl group of this molecule. Even after the protein is supplemented, this steric hindrance

• effect remains if the local structure of the linker consisting of an alkyl group and a pyrene group is maintained. Therefore, it is likely that the kinetic behavior of a protein immobilized with a single PASE linker exhibits an activation barrier-type energy surface between the bi-stable conformations on

• pathway on the adiabatic potential energy surface that connects these conformations caused by the deformation of the PASE linker. The reaction pathway for the conformational change of the PASE itself was found to have a reaction activation barrier [9]. First, we identify that the origin of the barrier is

Synthesis of photo- and ionochromic N-acylated 2-(aminomethylene)benzo[b]thiophene-3(2Н)-ones with a terminal phenanthroline group

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Irina V. Dubonosova,
• Olga Yu. Karlutova,
• Oleg P. Demidov,
• Alexander D. Dubonosov and
• Vladimir A. Bren

Beilstein J. Org. Chem. 2024, 20, 552–560, doi:10.3762/bjoc.20.47

• . The reverse reaction 3a–c→2a–c with full restoration of the initial absorption and fluorescence properties was characterized by a high activation barrier and could be accomplished by heating a solution of 3a–c in o-dichlorobenzene at 423 K or by passing dry hydrogen chloride through a solution of 3a–c

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• both within the context of a classic gold π-activation/protodeauration mechanism and a general acid-catalyzed mechanism without intermediate gold alkyls. Keywords: alkene hydroamination; general acid catalysis; gold catalysis; isotope effect; phosphine ligand effect; solvent effect; Introduction

• Since the seminal 1998 report by Teles et al. on the gold(I)-catalyzed addition of alcohols to alkynes [1], a multitude of gold-catalyzed reactions have been reported. Great successes in mechanistic analysis and synthetic methods have been achieved for allene and alkyne activation, while the activation

• competing Brønsted acid catalysis in gold-catalyzed alkene functionalization remains a consideration [2], and while it is assumed that alkene activations follow the same prototypical mechanisms as allene and alkyne activations, that is (1) π-activation with nucleophilic attack followed by (2

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• (Figure 1) [3]. The adenylation (A) domain in NRPSs is responsible for the selection and activation of amino acids, hydroxy acids, and aryl acids upon ATP consumption (Figure 2a) [4]. The activated aminoacyladenosine monophosphate (AMP) is transferred to the thiol group of a phosphopantetheine prosthetic

Enhanced host–guest interaction between [10]cycloparaphenylene ([10]CPP) and [5]CPP by cationic charges

• Eiichi Kayahara,
• Yoshiyuki Mizuhata and
• Shigeru Yamago

Beilstein J. Org. Chem. 2024, 20, 436–444, doi:10.3762/bjoc.20.38

• ). The other two isomers, 2 and 3 (Figure 5b,c), with two CPPs tilted at 15.6° and 45.5°, are 2.5 and 4.2 kJ mol−1 less stable than complex 1, respectively. The stability among the isomers is low, and the activation energy for isomerization should be very low. Therefore, all isomers are expected to be

Mono or double Pd-catalyzed C–H bond functionalization for the annulative π-extension of 1,8-dibromonaphthalene: a one pot access to fluoranthene derivatives

• Nahed Ketata,
• Linhao Liu,
• Ridha Ben Salem and
• Henri Doucet

Beilstein J. Org. Chem. 2024, 20, 427–435, doi:10.3762/bjoc.20.37

• palladium-catalyzed direct intermolecular arylation, followed by a direct intramolecular arylation step. As the C–H bond activation of several benzene derivatives remains very challenging, the preparation of fluoranthenes from 1,8-dibromonaphthalene via Suzuki coupling followed by intramolecular C–H

• activation has also been investigated to provide a complementary method. Using the most appropriate synthetic route and substrates, it is possible to introduce the desired functional groups at positions 7–10 on fluoranthenes. Keywords: catalysis; C–H bond functionalization; direct arylation; fluoranthenes

• %) using again a large excess of DBU base (7 equiv) also allowed to prepare unsubstituted fluoranthene in 87% yield (Scheme 1c) [22]. The reaction of naphthol with aryl bromides followed by nonaflation and intramolecular C–H activation for the access to fluoranthenes has also been reported [23]. Most of

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• step involves the activation of the carbonyl group by the catalyst. This renders it susceptible to a nucleophilic attack from the indole, leading to the formation of the intermediate product. Subsequently, a second nucleophilic attack occurs by another molecule of indole, yielding the final BIM product

• . The difference between the two mechanistic pathways is the nature of activation of the carbonyl group. Protic acids induce the protonation of the carbonyl group of the aldehyde or ketone, enhancing its electrophilic character. Whereas, Lewis acid catalysts bind to the heteroatom of the carbonyl group

• electron-withdrawing substituents. The reaction mechanism is based on the activation of the carbonyl group by molecular I2, through the formation of a halogen bond, which lowers the LUMO of the carbonyl moiety, increasing its electrophilicity, and thus allowing the addition of the indole group (Scheme 7

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• transfer complexes with a donor species 6 or via LUMO lowering activation with Brønsted and Lewis acids 7 (Scheme 2B), collectively offering a number of variables to influence their reactivity. Upon reduction, RAEs give rise to a radical anion 8 with a weakened N–O bond (BDE < 70 kcal/mol) [33]. While

• carbene (NHC)-catalyzed radical relay, and (iv) mechanisms under electrochemical activation. By discussing selected literature examples, we illustrate how the activation mode of NHPI esters, and the reactivity of the resulting radical species, can vary depending upon the choice of catalytic or

• readers to recently published review articles for additional discussion [30][31]. Discussion Mechanism under photochemical conditions In this section we provide a summary of the various conditions and activation modes employed in radical reactions of NHPI esters using visible-light irradiation. Upon

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• fragment gave rise to the appearance of an additional long-wavelength absorption band with λmax = 520 nm and ε = 9200 M−1⋅сm−1. Subjecting o-phenylenediamines 2с to the reaction with 3H-phenoxazin-3-one makes the simultaneous activation of two principle reaction pathways (SNH and Schiff base formation

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• conversion in situ, triggered by thermal activation, photoirradiation or redox control. Beside well-established reactions involving the elimination of carbon-based small molecules, i.e., retro-Diels–Alder and decarbonylation processes, the late-stage extrusion of chalcogen fragments has emerged as a highly

• ultimate elimination of chalcogen fragments upon thermal activation, photoirradiation and electron exchange. Keywords: arenes; chalcogens; extrusion; fused-ring systems; precursor approach; Introduction π-Conjugated polycyclic compounds (π-CPCs), including polycyclic aromatic hydrocarbons and their

• or crystals, or adsorbed on metallic substrates [9][10][11][12]. Conversion of the non-planar soluble precursor into the flat π-conjugated target compound is triggered on demand by a stimulus such as thermal activation, irradiation with light or injection of electrons, leading to the elimination of

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• electron-transfer to give the corresponding radical species through oxidative X–H bond cleavage. One such species is the amidyl radical, which is broadly synthetically useful as a nitrogen source in hydroamination reactions and as a hydrogen atom transfer (HAT) reagent for remote C–H activation [2][3][4][5

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• behavior was explained by the large energy gap between the ground states of the E- and Z-forms of indigo as well as low activation energy of inversion for derivatives 13. In the same year, Nielsen, Hecht and co-workers achieved a remarkable stabilization of the Z-isomer of N,N'-disubstituted indigo 24 by

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• mechanism of the CPA-catalyzed transfer hydrogenation reaction was proposed (Figure 2). The activation of 3,3-difluoro-substituted 3H-indole 1 by protonation through the Brønsted acid generates the iminium A. Subsequent hydrogen transfer from the Hantzsch ester gives the chiral amine 2 and pyridinium salt B

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• approach in the case of the synthesis 4a (47% vs 41%). Our mechanistic proposal is based on the information in previous reports by the groups of Bose [28], Watson [29], and Stahl [30]. Mechanistically, under basic conditions, the reaction is triggered by copper-catalyzed activation of o-phenylenediamine

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• glycosylation reactions. The 3’-sulfate was finally introduced through tin activation in benzene/DMF followed by treatment with a sulfur trioxide–trimethylamine complex in a 66% yield. Keywords: regioselective sulfation; thioglycoside donors; Thomsen–Friedenreich antigen; Introduction In a collaboration

• 10 furnished target 1 in a 90% yield. Formation of a stannylidene acetal via tin-activation was employed to achieve selective 3’-O-sulfation of compound 1 [27], with a variety of conditions being attempted (Table 1). With a TEG-N3 lactose compound, tin-activation was performed with Bu2SnO in

• observable sulfation taking place, the tin-activation step was suspected to be the root of the problem. To rectify this, similar to Malleron et al., 1 was refluxed, in a Dean–Stark set-up, with Bu2SnO in benzene/DMF (5:1, v/v) [32]. The solvent in the receiver was drained after 24 hours and the benzene was

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• important auxiliary group for the proximal C–H activation with the efforts of Daugulis [5] and others [6]. Results from medical research indicated that the introduction of halogen atoms into quinoline motifs has positive effects on their bioactivities, such as antimalarial, antitumor, and so on [7