Direct synthesis of acyl fluorides from carboxylic acids using benzothiazolium reagents

• Lilian M. Maas,
• Alex Haswell,
• Rory Hughes and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2024, 20, 921–930, doi:10.3762/bjoc.20.82

• of the desired amide 5a after 16 h at rt, which could be isolated in 80% yield after column chromatography. A survey of carboxylic acids 1 revealed that the one-pot approach is efficient for a variety of substitution profiles (Scheme 2). Aromatic acids bearing methyl substituents at the para-, ortho

• the optimised one-pot conditions with benzylamine (4a) resulted in the formation of the desired amide product, however, significant by-products were also observed. Careful column chromatography of the crude reaction mixture allowed for the partial isolation and characterisation of the

• benzothiazolium species would avoid the formation of thiocarbonyl difluoride, which is most likely responsible for the generation of thiourea 7. Pleasingly, under these conditions, amide 5s was formed smoothly with isolation by column chromatography providing the pure product in 71% yield (Scheme 3b). Furthermore

One-pot Ugi-azide and Heck reactions for the synthesis of heterocyclic systems containing tetrazole and 1,2,3,4-tetrahydroisoquinoline

• Jiawei Niu,
• Yuhui Wang,
• Shenghu Yan,
• Yue Zhang,
• Xiaoming Ma,
• Qiang Zhang and
• Wei Zhang

Beilstein J. Org. Chem. 2024, 20, 912–920, doi:10.3762/bjoc.20.81

• the reported procedures [41], the Ugi-azide reaction of 2-bromobenzaldehyde (1a, 1 mmol), allylamine hydrochloride (2, 1 mmol), trimethylsilyl azide (3, 1 mmol) and tert-butyl isocyanide (4a, 1 mmol) in MeOH at 40 °C for 24 h afforded 1,5-DS-1H-T 5a in 92% yield after chromatography purification. Our

• at 40 °C for 24 h in a sealed vial. Upon completion of the reaction, the reaction mixture was filtered and evaporated under vacuum to give crude products 5a. Further purification was conducted by flash chromatography with 1:6 petroleum ether/EtOAc to afford 5a in 92% yields. The adduct was confirmed

• was purified by flash chromatography with 1:4 ethyl acetate/petroleum ether to afford product 6a. General procedure for the one-pot synthesis of tetrazole-containing 1,2,3,4-tetrahydroisoquinolines 6 A mixture of 2-bromobenzaldehyde 1 (1 mmol), allylamine hydrochloride (2, 1 mmol), trimethylsilyl

Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• performed on a Bruker Apex Kappa-II CCD diffractometer. The solvents used, dimethyl sulfoxide and 1,4-dioxane, were purchased as dry solvents and applied without further purification. Other reagents, catalysts, ligands, acids, and bases were used as purchased from commercial suppliers. Column chromatography

• was performed on Merck Silica gel 60 (particle size 63–200 μm). Solvents for extraction and column chromatography were distilled prior employment. Representative method for the preparation of starting materials 5-Bromo-6-chloro-1,3-dimethyluracil (2). Uracil 1 (22.9 mmol; 4.00 g) was dissolved in

• by column chromatography (heptane/ethyl acetate). Representative procedure B for the synthesis of 4a–j. A mixture of 2 (402 µmol; 102 mg), Pd(CH3CN)2Cl2 (5 mol %; 23 µmol; 6 mg), CuI (5 mol %; 21 µmol; 4 mg) was dissolved in 1,4-dioxane (5 mL) and stirred for 5 min under an argon atmosphere. NEt3 (11

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• intramolecular crossed [2 + 2] cycloaddition strategy (Scheme 4C) [36]. They were able to avoid purification by column chromatography by transformation of BCH ester (±)-53 into BCH acid (±)-54, allowing isolation of pure 1,2-BCH (±)-54 by crystallisation. Through their synthesis they were able to access both

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• homologs to Vs NnlA, each homolog was recombinantly expressed in E. coli and purified. One of the five homologs, Pj NnlA, was found to be substantially insoluble and thus, could not be isolated. The remaining four homologs were isolated by immobilized metal affinity chromatography. While the most prominent

• contaminants but are either undissociated higher oligomer states or are oligomers whose formation is induced by SDS treatment, which has been observed for other proteins [29][30]. To characterize these oligomer states of native protein, analytical size exclusion chromatography data were collected (Figure 2B

• pET-28a(+)-TEV by GenScript. For protein expression, plasmids were electroporated into E. coli BL21(DE3) cells and protein was expressed and purified by immobilized metal affinity chromatography (IMAC) as previously described for Vs NnlA [21]. The only modification was that plasmids using pET-28a

Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• mixture of ketone 9e and the O-alkylated enol ether by-product, which was then reduced using NaBH4 to give alcohol 10e with 98:2 selectivity. Similarly, the reaction of 4-methoxybenzyl bromide and 2 gave ketone 9f in 35% yield without chromatography, and when reduced resulted in only a single alcohol

• chiral auxiliary 10a, and following a survey of conditions and isolation protocols, a 90% yield was obtained when 10a was heated in the presence of 2 equivalents of SOCl2 and 5 equivalents of pyridine in DCE. Flash chromatography of the chloroalkyl ether 11a resulted in significant loss due to hydrolysis

• sulfites were not intermediates in the reaction manifold. Furthermore, the isolation of some starting alcohols in the reactions of 10b and 10d following chromatography was attributed to hydrolysis of the corresponding dialkyl sulfite 13b and 13d on silica, a process that can be acid or base-catalysed [26

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• , yielding 4 with 90% yield and 99% conversion. A drawback of the Rolla protocol is the cost associated with the phase-transfer catalyst, and that the crude mixture requires purification through distillation or column chromatography. Another inconvenience is the high reaction temperature which limits the

Synthesis of new representatives of A₃B-type carboranylporphyrins based on meso-tetra(pentafluorophenyl)porphyrin transformations

• Victoria M. Alpatova,
• Evgeny G. Rys,
• Elena G. Kononova and
• Valentina A. Ol'shevskaya

Beilstein J. Org. Chem. 2024, 20, 767–776, doi:10.3762/bjoc.20.70

• temperature for 4 h. Under these reaction conditions, monoazide derivative 2 was obtained in 40% yield along with a mixture of porphyrin 1, di- and triazido-substituted derivatives. The reaction mixture was separated by column chromatography on SiO2 using CH2Cl2/hexane 2:8 as an eluent. The reduction of the

• temperature under argon. Under these reaction conditions, the tris(carboranyl)-substituted porphyrin 6 was obtained in 39% yield after purification by column chromatography on SiO2 using CHCl3/hexane 1:1 as eluent (Scheme 3). It should be noted that the reaction of porphyrin 6 with NaN3 in DMSO at 20 °C for

• 48 h resulted in a mixture of azidoporphyrin 7 and amino derivative 5 which were separated by column chromatography on SiO2 to give porphyrin 7 and porphyrin 5 in 66% and 33% yields, respectively. The reduction of porphyrin 7 with SnCl2·2H2O in MeOH afforded porphyrin 5 in 92% yield. We investigated

Substrate specificity of a ketosynthase domain involved in bacillaene biosynthesis

• Zhiyong Yin and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2024, 20, 734–740, doi:10.3762/bjoc.20.67

• His-tagged enzyme was obtained through heterologous expression and purification by Ni2+-NTA affinity chromatography (Figure S1, Supporting Information File 1). After incubation of the purified enzyme with the 13C-labelled SNAC derivatives (S)-11 or (R)-11 for 30 minutes at 25 °C, the incubation buffer

Genome mining of labdane-related diterpenoids: Discovery of the two-enzyme pathway leading to (−)-sandaracopimaradiene in the fungus Arthrinium sacchari

• Fumito Sato,
• Terutaka Sonohara,
• Shunta Fujiki,
• Akihiro Sugawara,
• Yohei Morishita,
• Taro Ozaki and
• Teigo Asai

Beilstein J. Org. Chem. 2024, 20, 714–720, doi:10.3762/bjoc.20.65

• determined to be (−)-sandaracopimaradiene (Figure 3B). We then turned our attention to the individual function of these enzymes. With this aim, AsPS and AsCPS were expressed in Escherichia coli as N-terminal hexa-histidine-tagged proteins and purified by Ni-affinity chromatography (see Supporting Information

New variochelins from soil-isolated Variovorax sp. H002

• Jabal Rahmat Haedar,
• Aya Yoshimura and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2024, 20, 692–700, doi:10.3762/bjoc.20.63

• remove salt and carbohydrate residues. After the retained siderophores were extracted with methanol, the obtained crude extract was further fractionated through several rounds of column chromatography, guided by a colorimetric-based chrome azurol sulfonate siderophore assay (CAS assay) [13], to yield

• , which was packed into a column for chromatography. The packed resin was washed with water several times and then eluted with an excess of methanol. The collected methanol fraction was concentrated in vacuo to obtain a crude extract. Subsequently, the crude extract was subjected to Sephadex LH-20 column

• chromatography, with methanol as the mobile phase. After monitoring the fractions by a CAS assay, the positive fractions were concentrated and purified by semi-preparative HPLC on a Cosmosil 5C18-MS-II column (10 mm ID × 250 mm, Nacalai Tesque), using a gradient system with MeCN/H2O (3:7 to 7:3) as the mobile

Regioselective quinazoline C2 modifications through the azide–tetrazole tautomeric equilibrium

• Dāgs Dāvis Līpiņš,
• Andris Jeminejs,
• Una Ušacka,
• Anatoly Mishnev,
• Māris Turks and
• Irina Novosjolova

Beilstein J. Org. Chem. 2024, 20, 675–683, doi:10.3762/bjoc.20.61

• % conversion when 1 equivalent of sulfinate was used. Products 8 exhibited instability in the presence of water, leading to the formation of hydrolysis product 9 [25] in the reaction mixture. This instability caused issues during the reaction work-up, and attempts for purification using column chromatography

• anhydrous THF, MeCN, and dioxane, using such azide sources as NaN3, LiN3, and TMS-N3. Full conversion towards product 12a was observed by HPLC with NaN3 in anhydrous DMF. However, precipitation, direct, and reversed-phase column chromatography provided low yields (Scheme 5) due to the degradation of the

Isolation and structure determination of a new analog of polycavernosides from marine Okeania sp. cyanobacterium

• Kairi Umeda,
• Naoaki Kurisawa,
• Ghulam Jeelani,
• Tomoyoshi Nozaki,
• Kiyotake Suenaga and
• Arihiro Iwasaki

Beilstein J. Org. Chem. 2024, 20, 645–652, doi:10.3762/bjoc.20.57

• hexane. The aqueous MeOH portion was purified by reversed-phase column chromatography (ODS silica gel, MeOH/H2O), automated flash chromatography (hexane/EtOAc), and repeated reversed-phase HPLC to give polycavernoside E (1, 0.5 mg as a colorless oil). The isolation of compound 1 was directed by its

• based on HMBC and HMQC experiments. HRESIMS spectra were obtained on a Bruker timsTOF mass spectrometer. For reversed-phase column chromatography, ODS silica gel Cosmosil 75C18-OPN (Nacalai Tesque) was used. For medium pressure column chromatography, AFCS (Smart Flash AKROS, Yamazen) consisting of a

• ). The aqueous MeOH layer was concentrated, and the obtained residue (673 mg) was separated by column chromatography on ODS (7 g) eluted with 35 mL of 40%, 60%, 80%, and 90% aqueous MeOH, followed by 35 mL of MeOH and 70 mL of CHCl3/MeOH 1:1. The fraction (244.4 mg) eluted with 80% MeOH was subjected to

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• earlier. We then analyzed the metabolites from the resulting transformants using high-performance liquid chromatography (HPLC), which revealed that all of the enzymes, except AdrI, accepted 1 and produced 5-MOA-derived meroterpenoids (Figure 2B, traces iii to vii). Since the transformation plasmid with

HPW-Catalyzed environmentally benign approach to imidazo[1,2-a]pyridines

• Luan A. Martinho and
• Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2024, 20, 628–637, doi:10.3762/bjoc.20.55

• furnished good results for the HPW-catalyzed GBB-3CR with yields greater than 63% (5m–o). It is always important to point out the limitations of a given method and in our case, we did have some. Purification by column chromatography became necessary since product isolation by precipitation was not effective

• . The catalyst was impregnated in the isolated crude product, and its removal through a recrystallization step was not successful. The use of a liquid–liquid extraction work-up step proved less effective compared to column chromatography purification. Moreover, attempts to recover the catalyst were not

• use of glyoxals did not provide the desired products. Instead, the respective starting materials were almost quantitatively recovered from the column chromatography purification step. The use of very reactive aldehydes such as formaldehyde and crotonaldehyde also did not provide the GBB adduct

Introduction of a human- and keyboard-friendly N-glycan nomenclature

• Friedrich Altmann,
• Johannes Helm,
• Martin Pabst and
• Johannes Stadlmann

Beilstein J. Org. Chem. 2024, 20, 607–620, doi:10.3762/bjoc.20.53

• oligomannosidic-type glycans, but this only makes sense if the true structure of a glycan is known, e.g., if glycans are analyzed by porous graphitic carbon chromatography [50]. Only the mannoses that occur in addition to those on the common core have to be explicitly defined and this is realized by their linkage

Chemical and biosynthetic potential of Penicillium shentong XL-F41

• Ran Zou,
• Xin Li,
• Xiaochen Chen,
• Yue-Wei Guo and
• Baofu Xu

Beilstein J. Org. Chem. 2024, 20, 597–606, doi:10.3762/bjoc.20.52

• extract was partitioned between EtOAc and H2O. The EtOAc fraction was chromatographed repeatedly over silica gel and reversed-phase high-performance liquid chromatography (RP-HPLC), resulting in the isolation of pure compounds 1–12 (Figure 2). According to literature reports of known compounds, some of

• onto macroporous resin for 4 hours or left overnight. It was then eluted with deionized water and ethanol through a chromatography column. The ethanol eluate was concentrated to dryness using a rotary evaporator. Subsequently, the ethanol extract underwent a triple extraction with EtOAc. The combined

• EtOAc extracts were dried using a rotary evaporator to obtain the final EtOAc extract, which was stored at −80 °C until further isolation process. Compounds purification The EtOAc extract (3.5 g) obtained from the fermentation broth of XISR I medium underwent column chromatography on silica using a

A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• Bacillus subtilis, BsIDH, has an optimal pH between 9.5–10 [12][13]. We also compared product formation between reactions with Hyg17 or BsIDH and myo-inositol using thin-layer chromatography (Supporting Information File 1, Figure S3). We found that both enzymes generated a ketone product with identical

• chromatography column (Cytiva) equilibrated in 50 mM NaCl, 20 mM Tris pH 8.0 and run on a Bio-Rad NGC chromatography system. Protein-containing fractions were identified by UV absorbance at 280 nm and were pooled and concentrated using a centrifugal device with a 10 kDa molecular weight cut-off (Pall Corporation

• using the same protocol as described above for Hyg17 except that a HiLoad 26/600 Superdex 200 pg size-exclusion chromatography column (Cytiva) equilibrated in 50 mM NaCl, 20 mM Tris pH 8.0 was used. Protein concentration was determined by UV absorbance at 280 nm using the calculated extinction

Entry to new spiroheterocycles via tandem Rh(II)-catalyzed O–H insertion/base-promoted cyclization involving diazoarylidene succinimides

• Alexander Yanovich,
• Anastasia Vepreva,
• Ksenia Malkova,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 561–569, doi:10.3762/bjoc.20.48

• previously tested using 3-bromopropanol. When the reaction was carried out in a one-pot format, with the replacement of DCM by acetone, the desired product 5a could only be isolated in moderate yield (52%). In the case of preliminary isolation of the OH-insertion product 16a (flash chromatography), the

Synthesis and biological profile of 2,3-dihydro[1,3]thiazolo[4,5-b]pyridines, a novel class of acyl-ACP thioesterase inhibitors

• Jens Frackenpohl,
• David M. Barber,
• Guido Bojack,
• Birgit Bollenbach-Wahl,
• Ralf Braun,
• Rahel Getachew,
• Sabine Hohmann,
• Kwang-Yoon Ko,
• Karoline Kurowski,
• Bernd Laber,
• Rebecca L. Mattison,
• Thomas Müller,
• Anna M. Reingruber,
• Dirk Schmutzler and
• Andrea Svejda

Beilstein J. Org. Chem. 2024, 20, 540–551, doi:10.3762/bjoc.20.46

• reduced pressure. The remaining residue was purified via column chromatography (gradient ethyl acetate/hexane) to afford 6-(2-fluorophenyl)pyridin-2-ylamine (9b, 9.98 g, 93%). 1H NMR (400 MHz, CDCl3, δ) 7.92–7.88 (m, 1H), 7.53–7.49 (m, 1H), 7.36–7.31 (m, 1H), 7.25–7.20 (m, 1H), 7.16–7.10 (m, 1H), 6.50

• was added, followed by thorough extraction. The combined organic layer was dried over magnesium sulfate, filtered, and dried under reduced pressure. The remaining residue was purified via column chromatography (gradient ethyl acetate/hexane) to afford 6-bromo-5-(2-fluorophenyl)[1,3]thiazolo[4,5-b

• acetonitrile, formic acid was added, and the reaction mixture was stirred at room temperature for 2 h. The phases were separated via phase separator, and the organic layer was concentrated under reduced pressure. The remaining crude product was purified via column chromatography (gradient ethyl acetate/hexane

A new analog of dihydroxybenzoic acid from Saccharopolyspora sp. KR21-0001

• Rattiya Janthanom,
• Yuta Kikuchi,
• Hiroki Kanto,
• Tomoyasu Hirose,
• Arisu Tahara,
• Takahiro Ishii,
• Arinthip Thamchaipenet and
• Yuki Inahashi

Beilstein J. Org. Chem. 2024, 20, 497–503, doi:10.3762/bjoc.20.44

• (Scheme 1). KR21-0001A (1) was purified from the culture broth guided by the ion peak (m/z 316) using LC–MS. The supernatant of the culture broth underwent HP20 column chromatography, but 1 was not retained in the resin and eluted in the flowthrough fraction. Since 1 was an acidic compound, the pH of the

• flowthrough fraction was adjusted to 3 with formic acid (FA) and chromatographed again on HP20 column. Now, 1 was retained in the resin and eluted by 50% MeOH with 0.05% FA. Then 1 was purified by silica gel and ODS column chromatography, and ethyl acetate extraction under acidic conditions. As the result of

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• Discussion For chemical investigation, the solvent EtOAc was used to extract the fermentation culture of the fungus P. boydii CS-793 to afford an organic extract. Isolation and purification of the crude extract with a combination of column chromatography (CC) by Lobar LiChroprep RP-18, silica gel, Sephadex

• by Chromeleon software (version 6.80). LC–MS were obtained with a Bruker maXis plus Q-TOF. Column chromatography was carried out using commercially available silica gel (200–300 mesh, Qingdao Haiyang Chemical Co.), Lobar LiChroprep RP-18 (40–63 μm, Merck), and Sephadex LH-20 (Pharmacia). Thin-layer

• chromatography (TLC) was performed with precoated Si gel GF254 plates (Merck, Darmstadt, Germany). Solvents used for extraction and purification were distilled prior to use. Peptone from yeast extract was purchased from Sigma-Aldrich. Rice, monosodium glutamate, and corn steep liquor were purchased from China

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• Supporting Information File 1). To isolate the main difluorinated product 3a, the reaction vessel was purged with nitrogen and the product mixture was partitioned between water and DCM to remove HF and salt by-products. Purification of 3a by column chromatography gave 3a as a white crystalline solid in 65

• . Again, purification by column chromatography gave the products 3 as white crystalline solids and the structures of compounds 3f and 3i were confirmed by X-ray crystallography (Figure 2 and Supporting Information File 1). Molecules 3a, f, and i all exist in the solid state with the dicarbonyl moiety

• , a range of ethyl benzoylacetate derivatives was prepared (see Supporting Information File 1) [45][46] and successfully subjected to difluorination conditions (Table 3). Purification by column chromatography using the minimum amount of silica gel with chloroform as the eluent yielded 5c–g in high

(E,Z)-1,1,1,4,4,4-Hexafluorobut-2-enes: hydrofluoroolefins halogenation/dehydrohalogenation cascade to reach new fluorinated allene

• Nataliia V. Kirij,
• Andrey A. Filatov,
• Yurii L. Yagupolskii,
• Sheng Peng and
• Lee Sprague

Beilstein J. Org. Chem. 2024, 20, 452–459, doi:10.3762/bjoc.20.40

• 11 had an allene structure. It was also important to note that the reaction proceeded more selectively in ether, which significantly reduced the amount of byproducts. Pure final alcohol 10 was isolated by column chromatography on SiO2 in 46% yield and 1H, 19F and 13C NMR spectra were in full

Mono or double Pd-catalyzed C–H bond functionalization for the annulative π-extension of 1,8-dibromonaphthalene: a one pot access to fluoranthene derivatives

• Nahed Ketata,
• Linhao Liu,
• Ridha Ben Salem and
• Henri Doucet

Beilstein J. Org. Chem. 2024, 20, 427–435, doi:10.3762/bjoc.20.37

• III 400 MHz and Bruker Avance neo 500 MHz spectrometers. High-resolution mass spectra were measured on a Bruker MaXis 4G spectrometer. Melting points were determined with a Kofler hot bench system. Chromatography purifications were performed using a CombiFlash NextGen 300 with Buchi FlashPure