Monitoring carbohydrate 3D structure quality with the Privateer database

• Jordan S. Dialpuri,
• Haroldas Bagdonas,
• Lucy C. Schofield,
• Phuong Thao Pham,
• Lou Holland and
• Jon Agirre

Beilstein J. Org. Chem. 2024, 20, 931–939, doi:10.3762/bjoc.20.83

• unlikeliness for a human to read and understand the WURCS code. It is much more likely that the WURCS code would be copied and searched for in a glycomics database, hence we provide that functionality in a streamlined way. The final section of the validation report includes all of the validation metrics

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• -workers reported a method for the selective bridge bromination of BCPs, giving access to brominated 1,2-BCP (±)-16 (Scheme 2) [33]. By exploiting the homolytic cleavage of the C–Br bond using in situ-generated silyl radicals, they were then able to harness the installed bromide functionality in

• substituted ortho-benzene. Stephenson and co-workers accessed 1,2-BCHeps 79a–c by insertion of alkenes into BCPs 78, and proposed the 1,2-BCHeps as isosteres of ortho-benzenes (Scheme 7A) [46]. The reaction proceeded via homolytic cleavage of a C–C bond adjacent to the imine functionality and stepwise alkene

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• , reductively decomposes the nitramine functionality of RDX to form •NO2 [38], a toxic reactive nitrogen species. Additionally, NNG is a structural analog of another natural product 3-nitropropionate (3NP) found in plants and fungi [39]. This highly toxic compound inhibited succinate dehydrogenase and other

• in diverse bacteria and environments. These results suggest the natural product NNG may also be found in diverse environments. The reactivity of the nitramine functionality begs for further studies confirming the natural abundance and physiological functions of NNG and other nitramine natural

Synthesis of new representatives of A₃B-type carboranylporphyrins based on meso-tetra(pentafluorophenyl)porphyrin transformations

• Victoria M. Alpatova,
• Evgeny G. Rys,
• Elena G. Kononova and
• Valentina A. Ol'shevskaya

Beilstein J. Org. Chem. 2024, 20, 767–776, doi:10.3762/bjoc.20.70

• the p-fluorine atom in the pentafluorophenyl substituent with an azide functionality which upon reduction with SnCl2 resulted in the formation of the corresponding porphyrin with an amino group. Pentafluorophenyl-substituted A3B-porphyrins were studied and transformed to thiol and amino-substituted

• functionality was supported by the design of conjugates containing maleimide and biotin substituents. The structures of prepared carboranylporphyrins were determined by UV–vis, IR, 1H 19F, 11B NMR spectroscopic data and MALDI mass spectrometry. Synthesis of porphyrins 2 and 3. Synthesis of carborane

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• , respectively. Analyses of the functionality of such metabolites may also lead to the elucidation of new life phenomena. However, in recent years, it has not only become increasingly difficult to obtain novel secondary metabolites from natural products, but applied research using natural products, such as drug

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• designated as 5′-demethylinsuetusin A1. Unlike compounds 3–7, the molecular formula of 8 was determined to be C25H38O5, which corresponds to the hydrogenated form of 7. NMR analysis revealed that the double bond at C-2′/C-3′ of 7 was reduced to a single bond in 8 and that 8 contained the enol functionality

A laterally-fused N-heterocyclic carbene framework from polysubstituted aminoimidazo[5,1-b]oxazol-6-ium salts

• Andrew D. Gillie,
• Matthew G. Wakeling,
• Bethan L. Greene,
• Louise Male and
• Paul W. Davies

Beilstein J. Org. Chem. 2024, 20, 621–627, doi:10.3762/bjoc.20.54

• sphere, accessing more diverse fused imidazolium frameworks and different peripheral functionality offers significant scope to influence catalytic properties. Few studies into L-shaped imidazolylidines have explored core motifs beyond ImPy, with NHCs derived from two π-rich rings fused together

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• reactions. Electrochemical stimuli, while generating no waste when employing electrodes, may face limitations due to the electroactive window of the solvent and require the incorporation of redox-active switching units, which can impose constraints on design and functionality. It is worth noting that the

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• without sacrificing stability, while future design of chiral ligands may depend on a better understanding of the chiral space generated when gold is coordinated to carbonyl functionality, rather than the alkene. Key observations include the following: • Mixed solvent effects support the involvement of

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• previously described an activity-based protein profiling (ABPP) strategy for NRPSs using ABPs that target A-domains (Figure 2b) [13][14][15]. The probes comprise an aminoacyl-AMS ligand and a photoaffinity group with clickable alkyne functionality appended to the 2′-OH group of adenosine. A complex structure

• and 9 exhibited lower affinity than inhibitors 1, 2, 4, 5, and 7. This result suggests that the incorporation of the pegylated functionality at the 2′-OH group of the adenosine skeleton particularly perturbs binding via steric hindrance. Next, we investigated whether ʟ-Phe-AMS derivatives could

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• at this stage was predicted to be problematic. Therefore, the azido functionality was installed in the spacer before the glycosylation. Donor 3 underwent an NIS/AgOTf-promoted glycosylation with the TEG-N3 acceptor [18], furnishing α-linked 4 in an 85% yield (Scheme 1). H-1 appeared as a doublet at

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• which can be embedded in other websites for more advanced teaching scenarios. Teaching NMR assignment Finally, teachers can also give their more advanced students assignments without the online quiz functionality, by providing spectra or a complete .nmrium dataset for the students to process, analyze

• grasp functionality would make it a preselected tool for the review process of chemistry publications. Future developments of NMRium include the processing of 2D NMR experiments, as well as a CASE- and prediction-supported assignment tool with an integrated validation function for assigned data [44

• ]. Currently, first implementations of NMRium in other environments have already successfully started. NMRium.org user interface showing a 2D NMR quiz for an unknown compound with a given molecular formula. NMRium interface assignment functionality for a drag-and-drop example. Analysis of overlapping signals

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• processability compared to their inorganic counterparts [1][2]. Charge transport in organic semiconductors is a fundamental aspect that governs the performance and functionality of various organic semiconductor devices, such as organic solar cells (OSCs), organic field-effect transistors (OFETs), organic light

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• employed technique for industrial production of polymeric materials, and other polymer synthesis involving a radical process. Post-polymerization modification, including polymer crosslinking and polymer surface modification, is the key process that introduces functionality and practicality to polymeric

• ]. In a typical thiol–ene system, the polymerization undergoes a free-radical chain mechanism, involving an initiation step from a thiol group via radical transfer or homolysis (Scheme 11, initiation), radical addition of the thiyl radical to the ene functionality (propagation 1), transfer from the

C–H bond functionalization: recent discoveries and future directions

• Indranil Chatterjee

Beilstein J. Org. Chem. 2023, 19, 1568–1569, doi:10.3762/bjoc.19.114

• feedstocks, the introduction of functionality at specific positions of molecules without requiring any prefunctionalized precursors, and the conversion of light alkanes to higher-value analogues [1][2]. The nonnecessity of prefunctionalization provides a step-economic alternative to classical reactions as

Functional characterisation of twelve terpene synthases from actinobacteria

• Anuj K. Chhalodia,
• Houchao Xu,
• Georges B. Tabekoueng,
• Binbin Gu,
• Kizerbo A. Taizoumbe,
• Lukas Lauterbach and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 1386–1398, doi:10.3762/bjoc.19.100

• ), geranylgeranyl pyrophosphate (GGPP) and geranylfarnesyl pyrophosphate (GFPP). Sesquiterpene synthases The enzyme from K. kofuensis (Table 1, entry 1) exhibited all highly conserved motifs required for functionality including the aspartate-rich motif (83DDAYCD) and the NSE triad (223NDIASYYKE, Figure S2

Non-noble metal-catalyzed cross-dehydrogenation coupling (CDC) involving ether α-C(sp³)–H to construct C–C bonds

• Hui Yu and
• Feng Xu

Beilstein J. Org. Chem. 2023, 19, 1259–1288, doi:10.3762/bjoc.19.94

• synthesis of compounds with quaternary centers and natural products with high structural complexity. In 2014, Li et al. reported a CuCl2-catalyzed cross-dehydrogenation coupling reaction of C(sp3)–H bonds adjacent to an ether oxygen and the C(sp3)–H bonds at the α-position of a carbonyl functionality in the

Acetaldehyde in the Enders triple cascade reaction via acetaldehyde dimethyl acetal

• Alessandro Brusa,
• Debora Iapadre,
• Maria Edith Casacchia,
• Alessio Carioscia,
• Giuliana Giorgianni,
• Giandomenico Magagnano,
• Fabio Pesciaioli and
• Armando Carlone

Beilstein J. Org. Chem. 2023, 19, 1243–1250, doi:10.3762/bjoc.19.92

• which two or more bond-forming steps happen under identical reaction conditions, and where a subsequent transformation takes place at the functionality obtained in the former bond-forming event. Cascade reactions are valuable tools for streamlining the synthesis of structurally complex molecules in a

Radical ligand transfer: a general strategy for radical functionalization

• David T. Nemoto Jr,
• Kang-Jie Bian,
• Shih-Chieh Kao and
• Julian G. West

Beilstein J. Org. Chem. 2023, 19, 1225–1233, doi:10.3762/bjoc.19.90

• (XAT) from the alkyl halide reagent and further oxidation of the transient radical to a carbocation by radical polar crossover (RPC), providing two mechanistic pathways to form the ATRA products [32]. While powerful, this approach is inherently incompatible with introducing alternative functionality

Two new lanostanoid glycosides isolated from a Kenyan polypore Fomitopsis carnea

• Winnie Chemutai Sum,
• Sherif S. Ebada,
• Didsanutda Gonkhom,
• Cony Decock,
• Rémy Bertrand Teponno,
• Josphat Clement Matasyoh and
• Marc Stadler

Beilstein J. Org. Chem. 2023, 19, 1161–1169, doi:10.3762/bjoc.19.84

• into a ketone moiety diminished the activity [31]. Similar findings on the related polyporenic acid B, with significant IC50 values between 8.4–12.2 µM [22], confirms the probable crucial role played by the 3-OH group in improving the potency. The presence of the 3-O-methylglutaroyl functionality in

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

• products, demonstrating a clear preference for addition to alkenes even in the presence of alkyne functionalities. Due to basic conditions of the reductive quenching (RQ) route, the formation of lactone side product 30h could be observed with a carboxylic acid functionality. In the absence of Et3N, the

Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• with the elimination of a H+ ion to form the functionalized aromatic moieties. The aza-Friedel–Crafts reaction is a subclass of the originally reported transformation that couples an imine with an aromatic system allowing for a facile incorporation of an alkylamine functionality into the aromatic

• aryl moieties. For this purpose, sterically bulky substituents need to be present in the aryl ring attached to the C3 position of the starting indoles. The axial chirality was attributed to ester and phenolic OH groups at the ortho-positions of the aryl ring and an additional phenolic OH functionality

• in 83 and the enantioregulation was achieved by BINOL-derived chiral phosphoric acid P22. An amine functionality was crucial in the isoxazole ring to enhance the nucleophilicity of the adjacent carbon atom. In addition, the amine hydrogen forms an H-bond with the catalyst along with another hydrogen

Photoredox catalysis enabling decarboxylative radical cyclization of γ,γ-dimethylallyltryptophan (DMAT) derivatives: formal synthesis of 6,7-secoagroclavine

• Alessio Regni,
• Francesca Bartoccini and
• Giovanni Piersanti

Beilstein J. Org. Chem. 2023, 19, 918–927, doi:10.3762/bjoc.19.70

• cyclization event would be triggered using their innate functionality, namely the α-amino carboxylate, through photoredox-mediated oxidative activation and CO2 extrusion, without the need for acid prefunctionalization to the redox-activated ester. Consequently, a technique involving direct generation of α

First synthesis of acylated nitrocyclopropanes

• Kento Iwai,
• Rikiya Kamidate,
• Khimiya Wada,
• Haruyasu Asahara and
• Nagatoshi Nishiwaki

Beilstein J. Org. Chem. 2023, 19, 892–900, doi:10.3762/bjoc.19.67

• reaction with dinucleophiles such as 2-aminopyridines, which affords pyrido[1,2-a]pyrimidinones through ring opening (Scheme 1, reaction a) [1]. Chemical transformations that take advantage of polyfunctionality are also possible. A six-membered ring forms between the aryl group and ester functionality

Palladium-catalyzed enantioselective three-component synthesis of α-arylglycine derivatives from glyoxylic acid, sulfonamides and aryltrifluoroborates

• Bastian Jakob,
• Nico Schneider,
• Luca Gengenbach and
• Georg Manolikakes

Beilstein J. Org. Chem. 2023, 19, 719–726, doi:10.3762/bjoc.19.52

• these transformations to a palladium-catalyzed enantioselective synthesis of α-arylglycine bearing a free carboxylic acid functionality directly from the parent glyoxylic acids (Scheme 1c) [22]. We could show that the desired arylglycine can be synthesized in good to excellent enantioselectivities