Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• (2b) consists of one glucose and one gentiobiose unit, crocin-III (2c) comprises two glucose molecules, crocin-IV (2d) contains only one gentiobiose moiety, and crocin-V (2e) has only one glucose moiety (Figure 1 and Table 1). Pure crocins form reddish-brown acicular crystals with a slight odor. They

• crocins The late steps in crocin biosynthesis are the glycosylation of crocetin (1) by various UGTs [86]. The crocin biosynthetic pathways in G. jasminoides have been characterized in detail, and several GjUGTs were identified. Attributed to different substrate specificities, the glucose or gentiobiose

• the total crocin content [114]. The supply of UDP-glucose is a rate-limiting step in crocin biosynthesis. Glucose is first phosphorylated to generate glucose-6-phosphate by hexokinase and then converted into glucose-1-phosphate by phosphoglucomutase (PGM1). Afterwards, UTP-glucose-1-phosphate

New variochelins from soil-isolated Variovorax sp. H002

• Jabal Rahmat Haedar,
• Aya Yoshimura and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2024, 20, 692–700, doi:10.3762/bjoc.20.63

• University. To stimulate siderophore production, H002 was grown in modified minimal medium containing casamino acids and glucose as nitrogen and carbon sources, respectively, in the presence of HP-20 resin. Upon cultivation for one week, the non-polar resin was collected and washed thoroughly with water to

• M9 salts (0.7% K2HPO4, 0.2% KH2PO4, 0.01% MgSO4, 0.1% (NH4)2SO4, 0.06% NaCl), 1% glucose, 1% casamino acids, and HP20 resin (Diaion, Mitsubushi Chemical), in forty baffled acrylic flasks. After growth at 30 °C/140 rpm for seven days, the cultures were filtered through cotton to obtain the HP20 resin

Chemical and biosynthetic potential of Penicillium shentong XL-F41

• Ran Zou,
• Xin Li,
• Xiaochen Chen,
• Yue-Wei Guo and
• Baofu Xu

Beilstein J. Org. Chem. 2024, 20, 597–606, doi:10.3762/bjoc.20.52

• for 2 days. Subsequently, they were inoculated into XISR I and XISR III liquid media (total volume 30 L) with a 20% inoculum dose. The cultures were further fermented for 14 days at 28 °C and 200 rpm. Media recipes XISR I medium (yeast extract 4 g/L; malt extract 10 g/L; glucose 4 g/L; MgCl2 1 µM

• ; FeSO4 1 µM; KI 2 g/L, KCl 2 g/L, KBr 2 g/L, NaNO2 2 g/L; H2O2 20 µM; (methyl jasmonate) MeJA 10 µM). XISR III medium (yeast extract 4 g/L; soy flour 10 g/L; glucose 30 g/L; MgCl2 1 µM; FeSO4 1 µM; KI 2 g/L, KCl 2 g/L, KBr 2 g/L, NaNO2 2 g/L; H2O2 20 µM; MeJA 10 µM; 5-azacytidine 6 µM; suberoylanilide

A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• aminocyclitol moieties. The biosynthesis of the aminocyclitol has been proposed to proceed through six enzymatic steps from glucose 6-phosphate through myo-inositol to the final methylenedioxy-containing aminocyclitol. Although there is some in vivo evidence for this proposed pathway, biochemical support for

• essential for in vivo antimicrobial activity suggesting a distinct biological function independent of ribosome binding. The hygromycin A biosynthetic gene cluster has been identified and the biosynthesis of the aminocyclitol has been proposed (Figure 1) [8][9]. Starting from glucose-6-phosphate, the pathway

• is hypothesized to proceed through six steps to the final methylenedioxy-containing aminocyclitol. First, glucose-6-phosphate is thought to be converted to myo-inositol by the myo-inositol-1-phosphate synthase Hyg18 and phosphatase Hyg25. Myo-inositol is then proposed to be oxidized by the

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

A new analog of dihydroxybenzoic acid from Saccharopolyspora sp. KR21-0001

• Rattiya Janthanom,
• Yuta Kikuchi,
• Hiroki Kanto,
• Tomoyasu Hirose,
• Arisu Tahara,
• Takahiro Ishii,
• Arinthip Thamchaipenet and
• Yuki Inahashi

Beilstein J. Org. Chem. 2024, 20, 497–503, doi:10.3762/bjoc.20.44

• EzBioCloud [24]. A phylogenetic tree was constructed based on the neighbor-joining method [25] by using MEGAX [26]. Fermentation Saccharopolyspora sp. KR21-0001 was inoculated into 100 mL of seed medium (2.4% soluble starch, 0.1% glucose, 0.3% peptone, 0.3% meat extract, 0.3% yeast extract, and 0.4% CaCO3

Spatial arrangements of cyclodextrin host–guest complexes in solution studied by ¹³C NMR and molecular modelling

• Konstantin Lebedinskiy,
• Ivan Barvík,
• Zdeněk Tošner,
• Ivana Císařová,
• Jindřich Jindřich and
• Radim Hrdina

Beilstein J. Org. Chem. 2024, 20, 331–335, doi:10.3762/bjoc.20.33

• complex of 1 with α-CD. Interatomic distances within the host–guest complex were measured using rotating-frame nuclear Overhauser effect spectroscopy (ROESY) measurements. For the complex of 1 with α-CD, the cross-peak in the 2D ROESY spectrum between proton 5 of the glucose moiety of the host α-CD and

• the protons 6 of molecule 1 reveals deep penetration of the guest into the cavity of α-cyclodextrin (Figure 2). All protons of 1 show ROESY cross-peaks with proton 3 of the glucose unit (see page S73 in Supporting Information File 1). For complexes of ligands with α-CD, we always performed a series of

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• inoculated into 10 mL of Tryptone Soya Broth (TSB) medium with kanamycin (50 mg/L) and incubated with shaking (300 rpm) at 30 °C for 2 days. One milliliter of this preculture medium was inoculated into 100 mL of Waksman medium (5 g/L BactoTM peptone, 5 g/L BactoTM yeast extract, 20 g/L glucose, 5 g/L meat

Sulfur-containing spiroketals from Breynia disticha and evaluations of their anti-inflammatory effect

• Ken-ichi Nakashima,
• Naohito Abe,
• Masayoshi Oyama,
• Hiroko Murata and
• Makoto Inoue

Beilstein J. Org. Chem. 2023, 19, 1604–1614, doi:10.3762/bjoc.19.117

• 13.96 and 22.16 min were coincident with those of the ᴅ-glucose and ʟ-rhamnose derivatives, respectively. Although the peak at 20.83 min was assumed to be attributable to apiofuranose, we were unable to obtain any standard for apiofuranose. In the reported monosaccharide identification method, the

• retention times of the ᴅ-glucose, ʟ-rhamnose, ᴅ-apiose, and ʟ-apiose derivatives were 17.48, 29.47, 28.57, and 15.69 min, respectively, with the ᴅ-apiose derivative having a longer retention time than the ʟ-apiose derivative [16]. Therefore, considering the retention times of the ᴅ-glucose (13.96 min) and ʟ

• identification, which revealed peaks at retention times of 13.97 (ᴅ-glucose), 20.84 (ᴅ-apiose), and 22.17 (ʟ-rhamnose) min. Hence, 2 was identified as breynogenin-β-S-oxide 3-O-β-ᴅ-apiofuranosyl-(1→2)-[α-ʟ-rhamnopyranosyl-(1→3)]-β-ᴅ-glucoptranosyl-(1→2)-β-ᴅ-glucopyranoside. Furthermore, we investigated the

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

Two new lanostanoid glycosides isolated from a Kenyan polypore Fomitopsis carnea

• Winnie Chemutai Sum,
• Sherif S. Ebada,
• Didsanutda Gonkhom,
• Cony Decock,
• Rémy Bertrand Teponno,
• Josphat Clement Matasyoh and
• Marc Stadler

Beilstein J. Org. Chem. 2023, 19, 1161–1169, doi:10.3762/bjoc.19.84

• was shown to be a key player in lanostane triterpenoid cytotoxicity; increased activity was demonstrated either by its esterification with glucose or by its reduction into a hydroxymethylene group unlike its presence as a free carboxylic acid moiety [23]. Thus, our findings provide further insights

• was weighed out into 10 × 500 mL Erlenmeyer flasks, each containing 90 mL of deionized H2O and autoclaved. In addition, 20 × 200 mL Erlenmeyer flasks containing cotton seed flour (Q6/2) liquid-state fermentation media were prepared as follows: media components (ᴅ-glucose 2.5 g/L, glycerol 10 g/L

Intermediates and shunt products of massiliachelin biosynthesis in Massilia sp. NR 4-1

• Till Steinmetz,
• Blaise Kimbadi Lombe and
• Markus Nett

Beilstein J. Org. Chem. 2023, 19, 909–917, doi:10.3762/bjoc.19.69

• acids, 0.5 g/L glucose, 0.5 g/L soluble starch, 0.3 g/L KH2PO4, 0.05 g/L MgSO4 × 7 H2O. The pH of the medium was adjusted to pH 7.2. The cultivation was conducted on a rotary shaker at 130 rpm and 30 °C for one week. Afterwards adsorber resin (XAD-7, 20 g/L) was added to the culture broth to bind the

Non-peptide compounds from Kronopolites svenhedini (Verhoeff) and their antitumor and iNOS inhibitory activities

• Yuan-Nan Yuan,
• Jin-Qiang Li,
• Hong-Bin Fang,
• Shao-Jun Xing,
• Yong-Ming Yan and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 789–799, doi:10.3762/bjoc.19.59

• % CO2 atmosphere using high-glucose DMEM (GIBCO, USA) containing 10% fetal bovine serum (FBS, GIBCO, USA), 100 U/mL penicillin, 10 μg/mL streptomycin, and 10 μg/mL puromycin. Cells were seeded at a density of 5000 cells/well in 96-well plates under the same incubation conditions. Following overnight

• cell line) cells were incubated in high-glucose DMEM (GIBCO, USA) containing 10% fetal bovine serum (FBS, GIBCO, USA), 100 U/mL penicillin, and 100 μg/mL streptomycin. Cells were maintained in an atmosphere of 5% CO2 at 37 °C and subsequently plated in 96-well plates at a concentration of 2 × 104 cells

Cassane diterpenoids with α-glucosidase inhibitory activity from the fruits of Pterolobium macropterum

• Sarot Cheenpracha,
• Ratchanaporn Chokchaisiri,
• Lucksagoon Ganranoo,
• Sareeya Bureekaew,
• Thunwadee Limtharakul and
• Surat Laphookhieo

Beilstein J. Org. Chem. 2023, 19, 658–665, doi:10.3762/bjoc.19.47

• common metabolic disease that affects how the body uses blood glucose. In 2021, 537 million patients suffered from diabetes worldwide, and the number is feared to increase to 783 million in 2045 [1]. Type 2 diabetes account for the majority of the cases [2]. Currently, inhibition of α-glucosidase, the

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• binding (∆rH). The reaction Gibbs energies (∆rG) were calculated by using the following equation: ∆rG = −RTln(Ka). The entropic contribution to the binding Gibbs energy was calculated by the equation: T∆rS = ∆rH − ∆rG. Confocal microscopy: HeLa cells were cultured and maintained in complete high glucose

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• glucose absorption by inhibiting the associated enzymes such as α-glucosidase, is one of the effective therapeutic methods in diabetes mellitus treatment [78]. Thus, Olanipekun and co-workers [19] evaluated the isolated corniculatolides and isocorniculatolides in their work against α-glucosidase from

Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements

• Robert N. Goldberg,
• Robert T. Giessmann,
• Peter J. Halling,
• Carsten Kettner and
• Hans V. Westerhoff

Beilstein J. Org. Chem. 2023, 19, 303–316, doi:10.3762/bjoc.19.26

• of the apparent equilibrium constant for this reaction, there is also some glucose 6-phosphatase present, the following reaction will also occur Thus, the production of ᴅ-glucose(aq) and the loss of ᴅ-glucose-6-phosphate(aq) via Equation 12 will affect the measured values of Q′ for Equation 11. These

• the specific example given, elimination of the glucose 6-phosphatase activity would be sufficient to avoid this error. If this is not possible, the use of method 1 where one measures the approach to equilibrium from opposite directions of reaction could be advantageous. Specifically, one can plot the

Continuous flow synthesis of 6-monoamino-6-monodeoxy-β-cyclodextrin

• János Máté Orosz,
• Dóra Ujj,
• Petr Kasal,
• Gábor Benkovics and
• Erika Bálint

Beilstein J. Org. Chem. 2023, 19, 294–302, doi:10.3762/bjoc.19.25

• ; monosubstitution; reduction; Introduction Cyclodextrins (CDs), as cyclic oligosaccharides, consist of a macrocyclic ring of glucose subunits linked by α-1,4-glycosidic bonds [1]. They are widely used in pharmaceutical, food and chemical industries, as well as in agriculture. It has been known for decades, that CD

• pure monofunctionalized CDs. Alternative approaches use sterically hindered reagents, preventing the approach of the second molecule of the reagent to provide higher yields for the monosubstituted compounds [4]. The three different hydroxy groups on the glucose subunits offer three different sites on

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

Nostochopcerol, a new antibacterial monoacylglycerol from the edible cyanobacterium Nostochopsis lobatus

• Naoya Oku,
• Saki Hayashi,
• Yuji Yamaguchi,
• Hiroyuki Takenaka and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2023, 19, 133–138, doi:10.3762/bjoc.19.13

• % yeast extract, 1.0% tryptone, 1.0% NaCl, 0.5% glucose, and 1.5% agar. After the agar solidified, the drug-impregnated disks were placed on the medium, and the test cultures were incubated at 32 °C for a day or two until the diameters of inhibitory haloes turned measurable. Microculture antimicrobial

Revisiting the bromination of 3β-hydroxycholest-5-ene with CBr₄/PPh₃ and the subsequent azidolysis of the resulting bromide, disparity in stereochemical behavior

• Christian Schumacher,
• Jas S. Ward,
• Kari Rissanen,
• Carsten Bolm and
• Mohamed Ramadan El Sayed Aly

Beilstein J. Org. Chem. 2023, 19, 91–99, doi:10.3762/bjoc.19.9

• propargylated, coupled with azido quinoline, and then functionalized with glucose as part of random designs to discover new antimicrobial and cytotoxic candidates. From these studies, conjugates I [9] and II [10] were identified to display an excellent preliminary antibacterial impact, and congener III [10

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• per cell and again reveal the similarity in the conservation of water molecule sites in the two isostructural complexes. The detailed host conformations are defined by numerous, relevant geometrical parameters that include measures of the angular tilts of the individual glucose rings relative to the

• host–guest complexation, as a consequence of a mutual-induced fit of host and guest molecules [39]. With reference to γ-CD·PRO, the asymmetric unit (ASU) comprises three pairs of glucose rings that generate three complete γ-CD molecules when rotation of these units around the four-fold axis parallel to

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• better effectiveness than other tested supramolecular hosts. Keywords: cyclodextrin; dimer; methylation; solubilization; tetracene; Introduction Cyclodextrins (CDs) are cyclic oligomers of glucose that play an important role in supramolecular chemistry [1]. The structure of any CD contains a

• frequently used in pharmaceutical, food, and chemical industries, agriculture, and environmental engineering [1]. They possess many hydroxy groups and are suitable for further chemical transformations that could alter their complexation ability [2]. Every glucose unit in CDs bears three hydroxy groups, i.e

• every glucose moiety. Sometimes these signals overlap and merge; however, it is still possible to isolate at least one small doublet, whose intensity is 1/7 of the whole H1-region. After dimerization, the H1-region can be more complex, indicating the further loss of symmetry in the molecules. The NMR

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• ; cyclodextrin; debenzylation; 2,4-dichlorobenzyl; selective; Introduction α-Cyclodextrin (1) is a cyclic carbohydrate consisting of six α-1,4-linked ᴅ-glucose molecules (Figure 1). It has a donut-like structure with the glucose residues all aligned with the α-side towards the center of the ring and the polar

• structure. 3) HMBC correlations between C-1 and H-4 in the former glucose (101.8 → 3.40, 101.2 → 3.65, 100.2 → 3.81) gave the order of residues. Overall the spectrum of 10 resembles that of the fully benzylated tetrol 5 [13]. As 9 and 10 are analogues to the products formed from 2 this means that 7 is

• pattern. The reason for this behavior is probably due to the collective electron-withdrawing effect of the chlorine atoms making the glucose residues of the fully DCB-protected compound more electron deficient at the ring oxygen. This means that the Lewis acidic aluminum reagent has more difficulty

Oxa-Michael-initiated cascade reactions of levoglucosenone

• Julian Klepp,
• Thomas Bousfield,
• Hugh Cummins,
• Sarah V. A.-M. Legendre,
• Jason E. Camp and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2022, 18, 1457–1462, doi:10.3762/bjoc.18.151

• derived from biomass pyrolysis, due to its reactive functionality, and the chirality which derives from glucose [4][5][6][7]. Reactions of 1 where the α,β-unsaturated ketone participates as an electrophile are usually completely diastereoselective, as the approach of the nucleophile is controlled by the