Direct synthesis of acyl fluorides from carboxylic acids using benzothiazolium reagents

• Lilian M. Maas,
• Alex Haswell,
• Rory Hughes and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2024, 20, 921–930, doi:10.3762/bjoc.20.82

• , reacting BT-SCF3 with carboxylic acids 1 under similar conditions provides (trifluoromethyl)thioesters 3 via a concerted deoxytrifluoromethylthiolation process from tetrahedral intermediate A affording thiocarbamate by-product B [31]. To test whether thioester species could act as intermediates in the

• the acyl fluoride with addition/elimination of fluoride to a thioester intermediate and independent deoxyfluorination of a second equivalent of the acid substrate by the released −SCF3 anion both operating under the reaction conditions. This allows for the reduction in the loading of BT-SCF3 to sub

One-pot Ugi-azide and Heck reactions for the synthesis of heterocyclic systems containing tetrazole and 1,2,3,4-tetrahydroisoquinoline

• Jiawei Niu,
• Yuhui Wang,
• Shenghu Yan,
• Yue Zhang,
• Xiaoming Ma,
• Qiang Zhang and
• Wei Zhang

Beilstein J. Org. Chem. 2024, 20, 912–920, doi:10.3762/bjoc.20.81

• . The initial Ugi-azide four-component reaction constructs the tetrazole motif while the subsequent intramolecular Heck reaction assembles the tetrahydroisoquinoline. The one-pot reaction avoids the intermediate purification which has favorable PASE in the synthesis of heterocyclic compounds

• azide (3, 1 mmol) and isocyanide 4 (1 mmol) in MeOH was stirred at 40 °C for 24 h. After the reaction was complete, the solvent was evaporated under vacuum to give the crude Ugi adduct 5, which was used in the Heck reaction without further purification. To a solution of the crude intermediate 5 in MeCN

Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• intermediate. A second effect appears to play a more important role and could be related to the structure of the starting material. The 6-position is part of an enamine and an α,β-unsaturated carbonyl structure, as depicted in Scheme 3. According to the mesomeric structure of the enamine, the 6-position could

• also investigated, but no desired product could be obtained. In fact, starting material 2 appears to be too unreactive to undergo a Suzuki reaction. Reversing the reaction steps gave the desired intermediate 5-bromo-6-phenyl-1,3-dimehtyluracil, which turned out to be unstable. This could be the reason

• why the desired product could not be synthesized at the first attempt. Therefore, the synthesis of the desired product from starting material 2 appears to be unlikely. It is reasonable to assume that this finding is due to the instability of the intermediate formed, as the desired product has been

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• -cubanes (Scheme 9B) [51]. Partial deprotection of diester 88 led to acid 89 as a key intermediate and in situ activation of the acid as the hypervalent iodine complex enabled a photoredox decarboxylative amination to 1,2-cubane 90. Alternatively, conversion of the acid moiety of 89 to redox active esters

• -containing 2-oxa-1,4-BCH 110b via Mykhailiuk’s synthesis [59]. 2-Oxa-1,4-BCH 110f, which contained a bridgehead ester in addition to the pendant primary iodide, was found to be a versatile synthetic intermediate. Substitution of the primary iodide with acetate or azide led to alcohol 111 and amine 113

• methylation of the intermediate diacid. As for the 1,2-cubanes, the authors were able to derivatise this general building block into a range of other 1,3-cubanes via metallophotoredox catalysis using acid 167 and redox active esters 168 and 169 (Scheme 17B) [51]. Arylation (to 170), amination (to 171) and

Confirmation of the stereochemistry of spiroviolene

• Yao Kong,
• Yuanning Liu,
• Kaibiao Wang,
• Tao Wang,
• Chen Wang,
• Ben Ai,
• Hongli Jia,
• Guohui Pan,
• Min Yin and
• Zhengren Xu

Beilstein J. Org. Chem. 2024, 20, 852–858, doi:10.3762/bjoc.20.77

• synthetic intermediate of 2 to spiroviolene. By taking advantage of the DFT transition state analysis of the hydroboration reaction of a key intermediate, as well as NOE correlation analysis of the resultant product, Snyder and co-workers have reassigned the right structure of spiroviolene to 1. However

• deoxyconidiogenol (4, Scheme 1A) by several terpene cyclases from fungus (PcCS, PchDS, PrDS) [15][16], which involves a 1,11-10,14 cyclization of GGPP, followed by 1,2-alkyl shift and a 2,10-cyclization, to give the key C3 cationic intermediate IM-1. A key 1,2-hydride shift from C2 to C3, which was observed in the

• isotope labeling experiments [6], followed by a 2,7-cyclization, afforded C6 cationic intermediate IM-3 with cyclopiane skeleton. Quench of the cation IM-3 with water would give 4, while upon two 1,2-alkyl shifts of IM-3, followed by deprotonation of cation IM-4, would give spiroviolene (1). On the other

Ortho-ester-substituted diaryliodonium salts enabled regioselective arylocyclization of naphthols toward 3,4-benzocoumarins

• Ke Jiang,
• Cheng Pan,
• Limin Wang,
• Hao-Yang Wang and
• Jianwei Han

Beilstein J. Org. Chem. 2024, 20, 841–851, doi:10.3762/bjoc.20.76

• of butylated hydroxytoluene (BHT) into the template reaction. Remarkably, we observed that the desired product was not formed, suggesting a radical pathway. Subsequently, we investigated the bond-formation sequence in the benzocyclization reaction. A possible intermediate of 3al’ was prepared and

• tested in the reaction under the standard conditions, however, product 3aa was not obtained. Based on the literature known results and the experimental evidences [35][36], we proposed a plausible reaction mechanism (Scheme 2b). The reaction started with the formation of radical intermediate A from

• diaryliodonium salt 2a. Naphthol 1a forms intermediate B with A after participation with the Cu(II) catalyst. Intermediate B generates C by radical substitution. A final intramolecular transesterification yields the benzocoumarin product 3aa. Conclusion In summary, we have employed ortho-ester-substituted

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• possibility is that NNG has several physiological functions and fates. For example, a natural product nitronate intermediate was recently shown to have two fates within Streptomyces achromogenes var. streptozoticus NRRL 3125 [46]. This nitronate intermediate was shown to be O-methylated to form O

• -methylnitronate, and subsequently incorporated into enteromycin. Alternatively, the intermediate could be denitrified by a nitronate monooxygenase (NMO) to produce NO2−. NnlA could replace NMO as the denitrifying enzyme in NNG producing bacteria, however, a BLAST search of NnlA in the genome of Streptomyces

Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• ]octane ring-system via the chlorosulfite intermediate. Analogous allylic alcohols with endocyclic and exocyclic unsaturations underwent chlorination without rearrangement due to formation of allylic cations. The rearrangement was also demonstrated using Appel conditions, which gave similar results via

• the alkoxytriphenylphosphonium intermediate. Several reactions of the products were investigated to show the utility of the rearrangement. Keywords: bicyclic ring; cyrene; levoglucosenone; rearrangement; thionyl chloride; Introduction The 6,8-dioxabicyclo[3.2.1]octane derivative levoglucosenone (1

• some sulfites 13b,d,e, attributed to the reduced steric hindrance in the chlorosulfite intermediate allowing for the second alcohol to approach prior to rearrangement. The isolation of these materials suggested that dialkyl sulfite formation could compete with the rearrangement if the neighbouring

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• the higher-substituted carbon atom to furnish intermediate species C. The irreversibility of the hydride addition and the regioselectivity thereof were supported by a deuterium labelling study with PhSiD3. The next steps involve homolytic cleavage of the cobalt–carbon bond to yield a carbon-centered

• radical D which is then trapped by TsCl to produce the corresponding alkyl chloride E. Detailed mechanistic studies on a related reaction were recently reported by Shenvi and co-workes [84]. These studies alternatively suggest that intermediate C could also be the result not of a non-simultaneous addition

• of the Co–H to the alkene but of a step-wise radical addition. A similar procedure was reported by Herzon [85]. His study focused on the use of two reductants, triethylsilane and 1,4-dihydrobenzene (DHB) (Scheme 24). He showed that in the presence of DHB, the intermediate radical could be trapped by

Substrate specificity of a ketosynthase domain involved in bacillaene biosynthesis

• Zhiyong Yin and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2024, 20, 734–740, doi:10.3762/bjoc.20.67

• second ketosynthase of the polyketide synthase BaeJ involved in bacillaene biosynthesis (BaeJ-KS2). For this purpose, both enantiomers of a 13C-labelled N-acetylcysteamine thioester (SNAC ester) surrogate of the proposed natural intermediate of BaeJ-KS2 were synthesised, including an enzymatic step with

• of a ketoreductase (KR) domain in module 1, the starter unit was initially suggested to be α-hydroxyisocaproate [14], but later it was shown that the KR of module 3 acts twice, in the reduction of the β-ketoacyl intermediate of the elongation step of module 3 and in the reduction of the α

• -ketoisocaproate starter unit with introduction of an S configured stereocentre (highlighted in red in Scheme 1) [15]. The domain organisation of module 3 containing no enoylreductase (ER) domain furthermore suggests the formation of an α,β-unsaturated intermediate, and not a full reduction at this stage, in

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• responsible for the structural diversity of natural products, both NRPS and PKS contain thioesterase (TE) domains in the final elongation module, which contribute to terminating biosynthesis [13][14]. Typically, TE domains cleave the thioester bond between the last PCP or ACP domain and the intermediate of

• terminal polyketide synthases (PKSs) in juvenimicin biosynthesis in 2017 [75], which presented a chance to accomplish the chemoenzymatic total syntheses of tylactone and the juvenimicins (Scheme 7). To generate an appropriately activated tylactone hexaketide intermediate 49, two key fragments, aldehyde 42

• depsipeptide ring and broad tolerance for structural variation [84]. To simplify the synthetic process and expedite the comprehensive structure–activity relationship analysis, they modified the preparation of the linear chain elongation intermediate and conjugated the late-stage P450-catalyzed selective

Genome mining of labdane-related diterpenoids: Discovery of the two-enzyme pathway leading to (−)-sandaracopimaradiene in the fungus Arthrinium sacchari

• Fumito Sato,
• Terutaka Sonohara,
• Shunta Fujiki,
• Akihiro Sugawara,
• Yohei Morishita,
• Taro Ozaki and
• Teigo Asai

Beilstein J. Org. Chem. 2024, 20, 714–720, doi:10.3762/bjoc.20.65

• stereoisomers, ent-CPP and syn-CPP. Class II TCs can also generate further structural diversity through hydride shifts, methyl shifts, and/or skeletal rearrangement of the labdadienyl+ diphosphate intermediate which is formed by the initial bicyclization. Following this class II TC-mediated cyclization, class I

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• would initially involve the addition of azide radicals to an alkene, generating a carbon-centered radical. Then, different trapping of this intermediate could be performed (Scheme 1B). First, C-centered radicals are known to recombine with metal-acetylides, in particular copper [27]. Reductive

• elimination of the organometallic intermediate would lead to the desired product (Scheme 1B, reaction 1). Unfortunately, this approach will not be compatible in the case of azidation since the copper, azides and alkynes present in the mixture are expected to undergo alkyne–azide cycloaddition reactions [28

• minimized diazide formation. Next, a solvent screening was performed as it can vastly influence reaction proceeding via a carbocation intermediate. Alkynyltrifluoroborates have a low solubility in chlorinated solvents but are well soluble in acetonitrile. Although this solvent has been used in similar

Regioselective quinazoline C2 modifications through the azide–tetrazole tautomeric equilibrium

• Dāgs Dāvis Līpiņš,
• Andris Jeminejs,
• Una Ušacka,
• Anatoly Mishnev,
• Māris Turks and
• Irina Novosjolova

Beilstein J. Org. Chem. 2024, 20, 675–683, doi:10.3762/bjoc.20.61

• first attempts in iPrOH did not provide the starting material conversion. The reaction in THF resulted in the full conversion of the starting material, but the analysis of the crude product revealed the quantitative formation of hydrolysis product 5a. Assuming the instability of intermediate 2a, a one

• hydrolysis product 5a. In MeCN the conversion to derivative 2a was stopped at 50% and was not facilitated by an extra addition of sulfinate. To our delight, in MeOH we observed the formation of intermediate 2a over 5 hours, and after the subsequent addition of sodium azide product 4a was isolated in 31

• % purity) [26] provided a more selective reaction, no water-based work-up was needed and the pure product was obtained by simple recrystallization from ethanol in yields up to 88%. The oxidation step thiol → sulfoxide was fast and full conversion to the intermediate was achieved in one hour for most

Palladium-catalyzed three-component radical-polar crossover carboamination of 1,3-dienes or allenes with diazo esters and amines

• Geng-Xin Liu,
• Xiao-Ting Jie,
• Ge-Jun Niu,
• Li-Sheng Yang,
• Xing-Lin Li,
• Jian Luo and
• Wen-Hao Hu

Beilstein J. Org. Chem. 2024, 20, 661–671, doi:10.3762/bjoc.20.59

• alkylpalladium radical with the release of dinitrogen. The radical intermediate selectively adds to the double bond of a 1,3-diene or allene, followed by the allylpalladium radical-polar crossover path and selective allylic substitution with the amine substrate, thereby leading to a single unsaturated γ- or ε

• intermediate B should be ruled out from this methodology (Scheme 4b). The product Z-6i was subjected to the standard conditions, but Z-6i was obtained in 100% recovery yield. Therefore, the E/Z selectivity of the MCRs with allenes could be determined by the allylic substitution process (Scheme 4c). Using HPd

• ) Radical trapping experiments with TEMPO. b) Exclusion of possible intermediate. c) Subjecting the product Z-6i to the standard conditions. d) The control reaction with HPd(PPh3)2Cl. e) UV–visible absorption analysis. Proposed mechanisms for the carboamination of 1,3-dienes or allenes with diazo esters and

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• key role in diversifying the structures of fungal meroterpenoids [16]. For example, (6R,10′R)-epoxyfarnesyl-DMOA methyl ester, a common intermediate with a linear terpenoid moiety, is known to be recognized by five different enzymes, namely Trt1, AusL, AdrI, InsA7, and InsB2, resulting in conversion

A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• Hygromycin A is a broad-spectrum antibiotic that contains an aminocyclitol moiety essential for bioactivity [6][7]. The biosynthesis of the aminocyclitol has been proposed to proceed through six steps starting from glucose-6-phosphate through a myo-inositol intermediate to the final methylenedioxy

Recent developments in the engineered biosynthesis of fungal meroterpenoids

• Zhiyang Quan and
• Takayoshi Awakawa

Beilstein J. Org. Chem. 2024, 20, 578–588, doi:10.3762/bjoc.20.50

• resulting cation intermediate at C-4' to induce an acyl shift, forming the steroid-like structure of 7 with a 6-6-6-5 ring (Figure 2). Swapping terpenoid cyclases in heterologous expression systems A search of the genome database for Trt1-homolog CYCs revealed the enzyme AusL (41% identity with Trt1) in

• -6-6-5-membered andrastin E (9) (Figure 2) [8]. Like Trt1, AusL and AdrI create the common cation intermediate from 6, but they deprotonate the cationic intermediate from H-1' and H-11, respectively [12]. The differences in the structural bases of Trt1, AusL, and AdrI are quite intriguing, in that

• was created, and produced the new compound 11, as expected. In this mutant, deprotonation occurs from the OH-3 of the folded intermediate, and the altered cyclization mode produces 11 (Figure 2). Reconstitution based on the several meroterpenoid pathways in heterologous expression systems Recently

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• previous paper [9]. After the structural optimization calculation of the (meta)stable conformations until the Hellman–Feynman force acting on each atom was less than 10−6 Ry/Bohr, the nudged elastic band method determined the minimum energy pathway. Intermediate images created by linear interpolation

Entry to new spiroheterocycles via tandem Rh(II)-catalyzed O–H insertion/base-promoted cyclization involving diazoarylidene succinimides

• Alexander Yanovich,
• Anastasia Vepreva,
• Ksenia Malkova,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 561–569, doi:10.3762/bjoc.20.48

• approach using propiolic acids [39]. The diazo reagent 1a was introduced in the Rh2(esp)2-catalyzed insertion into the O–H bond of phenylpropropiolic acid (9а) to form the intermediate compound 10a (Scheme 2). The cyclization of the latter was carried out in DCM solution under the action of DIPEA (30 mol

• obtained when unsubstituted propiolic acid was used as OH-substrate (2g). The reasons for this result may be due to the increased reactivity of the terminal triple bond of the propiolic moiety, which favors the participation of the OH-insertion intermediate in side processes. However, we were unable to

• cyclization step was more selective and the total yield of the desired product was higher. The 6-exo-tet cyclization of intermediate compounds 16 under the action of DBU in acetone at room temperature proceeded within a few minutes, which is much faster than in the case of compounds 14. This can be explained

Synthesis and biological profile of 2,3-dihydro[1,3]thiazolo[4,5-b]pyridines, a novel class of acyl-ACP thioesterase inhibitors

• Jens Frackenpohl,
• David M. Barber,
• Guido Bojack,
• Birgit Bollenbach-Wahl,
• Ralf Braun,
• Rahel Getachew,
• Sabine Hohmann,
• Kwang-Yoon Ko,
• Karoline Kurowski,
• Bernd Laber,
• Rebecca L. Mattison,
• Thomas Müller,
• Anna M. Reingruber,
• Dirk Schmutzler and
• Andrea Svejda

Beilstein J. Org. Chem. 2024, 20, 540–551, doi:10.3762/bjoc.20.46

• series. Likewise, 1,8-naphthyridines are easily accessed in high yield and on a multigram scale via Friedländer synthesis [18]. This was in clear contrast to the intermediate thiazolo[4,5-b]pyridines and the desired 2,3-dihydro[1,3]thiazolo[4,5-b]pyridine that we wanted to access, with approaches to

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• ” intermediate conformation that is converted to a “W” conformation like the open terpyridine when complexed to a second Cu+ cation. While the “S” state is obtained with one equivalent of copper(I), the full conversion to the “W” state is more difficult to achieve and needs up to 8 equivalents. This is due to

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• both within the context of a classic gold π-activation/protodeauration mechanism and a general acid-catalyzed mechanism without intermediate gold alkyls. Keywords: alkene hydroamination; general acid catalysis; gold catalysis; isotope effect; phosphine ligand effect; solvent effect; Introduction

• ) protodeauration (Scheme 1), the depth of experimental mechanistic validation achieved for allenes and alkynes have not been reproduced with alkenes. In an important foundational study by Toste, the expected alkylgold intermediate from intramolecular alkene hydroamination was isolated, however, turnover

• protodeauration was not confirmed [27]. Follow-up studies in our lab revealed that the alkylgold intermediate (2a, Scheme 1) reacts significantly slower than observed rates for catalytic hydroamination, suggesting it is not a viable intermediate in the catalytic cycle [28]. It has been shown that C(sp2)-vinylgold

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• pathway, the bergamotene sesquiterpenoid (I) is presumed to be a key intermediate cyclized from farnesyl diphosphate (FPP) via nerolidyl diphosphate (NPP) followed by a bisabolyl cation [14]. Subsequent oxidation (bishydroxylation) catalyzed by some oxygenase such as P450 would afford the key intermediate

• II, which could be transferred to III by cyclization and epoxidation. Oxidation and methylation of intermediate III would produce IV. Compounds 1–4 could be obtained by nucleophilic attack at C-8 with the hydroxy or thiol group from IV via intermediate V, followed by oxidation and cyclization

• (pathway b), while nucleophilic attack at C-14 of intermediate IV by a chloride could generate compound 5 (pathway a). In addition, compound 5 might also be derived from intermediate IV by cleavage of the ester bond at C-2 to form the intermediate VI [15], followed by chlorination (pathway c). Compounds 1

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• corresponding 2,2-difluoroketones [15]. In related kinetic studies concerning the electrophilic 2-fluorination of 1,3-diketones with Selectfluor [16][17], we demonstrated that the rate-determining step for difluorination was enolization of the intermediate 2-fluoro-1,3-diketone. Monofluorination of 1,3