(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• . Isomerisation to the desired cis-[2]-ladderanes 150 was achieved through epimerisation of the ester functional group (Scheme 16B) [63]. Transformation of the phenyl group (of 150a) or alkene group (of 150b) into synthetically versatile acid 151 and protected alcohol 152 was achieved by standard chemical

• larger than in meta-benzene, the dihedral angle θ is significantly larger and strongly dependent on the specific substituents. 1,3-Cuneanes can be obtained by metal-induced isomerisation of 1,4-cubanes [69]. Recent reports of their synthesis indicate that silver salts enable the isomerisation to occur

• that the use of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) as the solvent in the isomerisation reaction changes the obtained ratio in favour of the 1,3-cuneane when compared to their alternative solvent system of H2O/MeOH [72]. Iwabuchi and co-workers demonstrated the suitability of 1,3-cuneanes to

Substrate specificity of a ketosynthase domain involved in bacillaene biosynthesis

• Zhiyong Yin and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2024, 20, 734–740, doi:10.3762/bjoc.20.67

• bond isomerisation in the late polyketide intermediates before they are passed on for their TE-mediated release from the PKS. Such gatekeeping roles have also been discussed for condensation-competent KSs [27] that may process the substrate for the next round of elongation only after installation of

Functions of enzyme domains in 2-methylisoborneol biosynthesis and enzymatic synthesis of non-natural analogs

• Binbin Gu,
• Lin-Fu Liang and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 1452–1459, doi:10.3762/bjoc.19.104

• model was proposed that proceeds through the S-adenosylmethionine (SAM) dependent methylation of geranyl diphosphate (GPP) to 2-methyl-GPP (2-Me-GPP), followed by a terpene cyclisation to 1 (Scheme 1A) [10]. The cyclisation cascade requires isomerisation to (R)-2-methyllinalyl diphosphate [22], followed

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• isotopic labelling and proposed to proceed by hydroboration of the allene 62 by the borane catalyst (H-B-9-BBN or 10-phenyl-9-borabicyclo[3.3.2]decane [Ph-BBD]) followed by rapid isomerisation from the (Z)-63 to (E)-allylborane 64 which underwent allylation of the ketone 65 to give an allylic borinic ester

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• photochemical E/Z isomerisation to 13 prior to [2 + 2] cycloaddition. Further photochemical products from 1 include 5, 15 that may be formed through a biradical mechanism, and rearranged 16 [51]. Germacrene B (1) has planar chirality (Scheme 4D), but recovery of the starting material from an incomplete

• (+)-α-vetivone (43) (Scheme 12C) [96][97] and isovalencenic acid (45) (Scheme 12D) [98] were correlated to this hydrocarbon. Recently, an iron catalyst has been developed that was applied in the isomerisation of valencene (48) to 39 (Scheme 12E) [99]. The biogenesis of 40 would be possible from I2a

• ) chemical correlation of 45 with 39 (no yields were given in the original report), E) isomerisation of 48 to 39 (product was not isolated), F) partial hydrogenation of 49 to 40. The sesquiterpenes derived from cation I3. WMR = Wagner–Meerwein rearrangement. Cyclisation modes for 1 to the guaiane skeleton. A

Peptide stapling by late-stage Suzuki–Miyaura cross-coupling

• Hendrik Gruß,
• Rebecca C. Feiner,
• Ridhiwan Mseya,
• David C. Schröder,
• Michał Jewgiński,
• Kristian M. Müller,
• Rafał Latajka,
• Antoine Marion and
• Norbert Sewald

Beilstein J. Org. Chem. 2022, 18, 1–12, doi:10.3762/bjoc.18.1

• cyclised RGD peptides. It could be proven that an isomerisation is not caused by the cross-coupling but by the presence of stable isomers/conformers. Molecular dynamics (MD) simulations verified the appearance of stable, distinct conformers or atropisomers, which were in accordance with the experimental

Regioselective N-alkylation of the 1H-indazole scaffold; ring substituent and N-alkylating reagent effects on regioisomeric distribution

• Ryan M. Alam and
• John J. Keating

Beilstein J. Org. Chem. 2021, 17, 1939–1951, doi:10.3762/bjoc.17.127

• , via isomerisation of the corresponding N-2 acylindazole to the more stable N-1 regioisomer [18]. Similarly, N-1 substituted indazoles have been obtained through thermodynamic equilibration, using β-halo ester electrophiles, in the presence of DMF [19]. These latter findings have been utilized to great

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

Recent advances in palladium-catalysed asymmetric 1,4–additions of arylboronic acids to conjugated enones and chromones

• Jan Bartáček,
• Jan Svoboda,
• Martin Kocúrik,
• Jaroslav Pochobradský,
• Alexander Čegan,
• Miloš Sedlák and
• Jiří Váňa

Beilstein J. Org. Chem. 2021, 17, 1048–1085, doi:10.3762/bjoc.17.84

• isomerisation to 1-tetralones with >99% stereoretention (Scheme 18) [53]. To obtain the starting material for the transformation (Scheme 18), the authors have described the addition of arylboronic acids to 3-substituted-2-cyclopentenones (Table 26) either by using Stoltz’s catalytic system L9/Pd(TFA)2 or by its

• system for the synthesis of intermediates of biologically active compounds [4]. Usage of a Michael addition catalysed by L9/Pd(TFA)2 in the total synthesis of (–)-ar-tenuifolene [12]. Synthesis of terpenoids by Michael addition to 3-methyl-2-cyclopentenone [13]. Rh-catalysed isomerisation of 3-alkyl-3

Kinetics of enzyme-catalysed desymmetrisation of prochiral substrates: product enantiomeric excess is not always constant

• Peter J. Halling

Beilstein J. Org. Chem. 2021, 17, 873–884, doi:10.3762/bjoc.17.73

• rate constants equal to the equilibrium constant of the overall reaction, which the enzyme is of course unable to change. A different combination of rate constants must equal the equilibrium constant for the isomerisation of one product enantiomer into the other, which is necessarily 1 (in an achiral

Heterogeneous photocatalysis in flow chemical reactors

• Christopher G. Thomson,
• Ai-Lan Lee and
• Filipe Vilela

Beilstein J. Org. Chem. 2020, 16, 1495–1549, doi:10.3762/bjoc.16.125

Potent hemithioindigo-based antimitotics photocontrol the microtubule cytoskeleton in cellulo

• Alexander Sailer,
• Franziska Ermer,
• Yvonne Kraus,
• Rebekkah Bingham,
• Ferdinand H. Lutter,
• Julia Ahlfeld and
• Oliver Thorn-Seshold

Beilstein J. Org. Chem. 2020, 16, 125–134, doi:10.3762/bjoc.16.14

• , and high-yielding synthesis of HITub-4. Chemical structures of HITubs. Key variations with respect to HITub-4 are highlighted in dashed boxes. Photocharacterisation of HITub-4. a) Photochemical and thermal isomerisation. b) UV–vis spectra after saturating illumination at λ = 450, 505, and 530 nm

Synthetic terpenoids in the world of fragrances: Iso E Super^® is the showcase

• Alexey Stepanyuk and
• Andreas Kirschning

Beilstein J. Org. Chem. 2019, 15, 2590–2602, doi:10.3762/bjoc.15.252

• conditions for the synthesis of all Iso E Super® related compounds vary slightly. The main difference lies in a prolonged isomerisation process of the Diels–Alder product 32 before and after the second cyclisation step. Georgywood® (35) named after Georg Fráter is industrially produced with, e.g., methanol

• as additive to enforce isomerisation and suppress premature cyclisation [24][25][26]. Today, Iso E Super® (33) and its isomers are widely used in a variety of perfumery products. From Haliston Woman that only contains a very small portion of this component and Christian Dior´s Fahrenheit consisting

• of production is the most important one for product formation and composition. Therefore, several patents exist describing the isomerisation and cyclisation steps involved. In the first step, both olefinic double bonds of the primary Diels–Alder product 32 can isomerise, thereby creating several

Harnessing enzyme plasticity for the synthesis of oxygenated sesquiterpenoids

• Melodi Demiray,
• David J. Miller and
• Rudolf K. Allemann

Beilstein J. Org. Chem. 2019, 15, 2184–2190, doi:10.3762/bjoc.15.215

• high regio- and stereochemical control (Scheme 1) [5][6][7]. The carbocationic reaction mechanism of ADS involves an isomerisation to nerolidyl diphosphate (NDP, 4) followed by breakage of the carbon–oxygen bond to generate the allylic cation 5. This allows rotation around the C2–C3 bond and 1,6-ring

• = 5.17, t, JH,H = 7.0 Hz) due to the presence of the methoxy group two carbon atoms away. The ADS-catalysed 1,11-cyclisation of diphosphate 11 suggests that the 8-methoxy group prevents the formation of a conformation conducive to isomerisation to NDP (4, Scheme 1) and hence 1,6-cyclisation to generate a

• ]. Mechanistically, isomerisation of 12 to the methoxy-NDP analogue 28 allows for an ADS-catalysed 1,6-cyclisation to the 12-methoxy-bisabolyl cation (29) followed by a [1,3]-hydride shift, which relocates the positive charge on C1 in 30. With FDP and 12-hydroxy-FDP, a subsequent 1,10-ring closure has been proposed

Azologization and repurposing of a hetero-stilbene-based kinase inhibitor: towards the design of photoswitchable sirtuin inhibitors

• Christoph W. Grathwol,
• Nathalie Wössner,
• Sören Swyter,
• Adam C. Smith,
• Enrico Tapavicza,
• Robert K. Hofstetter,
• Anja Bodtke,
• Manfred Jung and
• Andreas Link

Beilstein J. Org. Chem. 2019, 15, 2170–2183, doi:10.3762/bjoc.15.214

• compound showed similar activity in its thermodynamically stable stretched-out (E)-form. Irradiation of this isomer triggers isomerisation to the long-lived (Z)-configuration with a bent geometry causing a considerably shorter end‐to‐end distance. The resulting affinity shifts are intended to enable real

Fluorinated azobenzenes as supramolecular halogen-bonding building blocks

• Esther Nieland,
• Oliver Weingart and
• Bernd M. Schmidt

Beilstein J. Org. Chem. 2019, 15, 2013–2019, doi:10.3762/bjoc.15.197

• because azobenzene is one of the simplest molecules that can undergo photoinduced isomerisation of its N=N central double bond. The photoisomerisation reaction in n→π and π →π* excited states has been studied with experimental [36][37][38] and theoretical approaches [39][40][41][42][43][44]. By

• OriginPro. Kinetic measurements were performed in MeCN at 60 °C (Supporting Information File 1). Activation process parameters for the E→Z isomerisation in MeCN at 60 °C, B3LYP, def-TZVP basis for C, H, N, F, DGZVP all electron basis for iodine. Grimme D3 dispersion correction was applied. Values were

Norbornadiene-functionalized triazatriangulenium and trioxatriangulenium platforms

• Roland Löw,
• Talina Rusch,
• Tobias Moje,
• Fynn Röhricht,
• Olaf M. Magnussen and
• Rainer Herges

Beilstein J. Org. Chem. 2019, 15, 1815–1821, doi:10.3762/bjoc.15.175

• photostationary state of NBD 3a to QC 3b is lower with 91%. No thermal cycloreversion of the quadricyclanes 2b and 3b was observed at room temperature within a period of one month. Obviously, a cyano as well as a neighbouring ethynyl substituent are necessary to induce the back-isomerisation at ambient conditions

Phylogenomic analyses and distribution of terpene synthases among Streptomyces

• Lara Martín-Sánchez,
• Kumar Saurabh Singh,
• Mariana Avalos,
• Gilles P. van Wezel,
• Jeroen S. Dickschat and
• Paolina Garbeva

Beilstein J. Org. Chem. 2019, 15, 1181–1193, doi:10.3762/bjoc.15.115

• substrate 2-methyl-GPP to form 2-MIB (2) [25][26]. An S-adenosylmethionine (SAM) dependent methyl transferase is responsible for the methylation of GPP into 2-methyl-GPP (14, Scheme 2). Its isomerisation to 15 allows for a cyclisation via the cationic intermediates B and C to 2. Genes encoding for SAM

Stereochemical investigations on the biosynthesis of achiral (Z)-γ-bisabolene in Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 789–794, doi:10.3762/bjoc.15.75

• biosynthesis from FPP featuring the common bisabolyl cation (A) as an intermediate after 1,6-cyclisation (Scheme 1). For this cyclisation, a formal isomerisation of the (E)-configured double bond in FPP to the (Z)-configured double bond in A is needed. To address this problem, a 1,3-suprafacial transposition

Catalysis of linear alkene metathesis by Grubbs-type ruthenium alkylidene complexes containing hemilabile α,α-diphenyl-(monosubstituted-pyridin-2-yl)methanolato ligands

• Tegene T. Tole,
• Johan H. L. Jordaan and
• Hermanus C. M. Vosloo

Beilstein J. Org. Chem. 2019, 15, 194–209, doi:10.3762/bjoc.15.19

• primary metathesis products, i.e., 7-tetradecene and ethene, above 85% were obtained with all the precatalysts at 80 and 90 °C. High selectivities were also observed at 100 °C for the 4-Me- and 3-OMe-substituted precatalysts. With an increase in temperature an increase in isomerisation products and

• (RCM) of dialkenes, ring-opening metathesis polymerisation (ROMP), isomerisation of alkenes and cross-metathesis (CM) of alkenes [7]. The complexes were synthesized by reacting the lithium salts of the corresponding pyridinyl alcohols with [RuCl2(=CHC6H5)(P(iPr3))2]. These complexes catalysed inter

• in 10 °C intervals between 70 and 110 °C. Results and Discussion A mixture of products, summarised in Table 1, is obtained during the metathesis of 1-octene, i.e., primary metathesis products (PMPs), isomerisation products (IPs) and secondary metathesis products (SMPs). The PMPs, 7-tetradecene (cis

Ammonium-tagged ruthenium-based catalysts for olefin metathesis in aqueous media under ultrasound and microwave irradiation

• Łukasz Gułajski,
• Andrzej Tracz,
• Katarzyna Urbaniak,
• Stefan J. Czarnocki,
• Michał Bieniek and
• Tomasz K. Olszewski

Beilstein J. Org. Chem. 2019, 15, 160–166, doi:10.3762/bjoc.15.16

• catalysts (5 mol %) produced the desired product again with quite similar yields under classical conditions. However, the use of microwave or ultrasound irradiation promoted the undesired isomerisation of the C=C bond, thus lowering the yields of the desired product 9 (Table 1, entries 3 and 4). This result

• is in agreement with the known fact that in protic solvents ruthenium hydrides are formed leading to isomerisation byproducts [66]. Finally, we were pleased to see that the use of ultrasound or microwave irradiation were beneficial for the CM of alcohol 8 with methyl acrylate (10, Table 1, entries 5

1,8-Bis(dimethylamino)naphthyl-2-ketimines: Inside vs outside protonation

• A. S. Antonov,
• A. F. Pozharskii,
• P. M. Tolstoy,
• A. Filarowski and
• O. V. Khoroshilova

Beilstein J. Org. Chem. 2018, 14, 2940–2948, doi:10.3762/bjoc.14.273

• for IHB formation. The rate and equilibrium constants of this uncatalysed isomerisation [10] depend on the solvent and temperature. By comparing the results obtained in different solvents at equal temperatures, one can see that the Ha Hb exchange rate is noticeably lower in DMSO-d6 (Figures S9–S12 in

• Supporting Information File 1) than in acetone-d6 and CD3CN (Figures S5–S8 in Supporting Information File 1), while the chemical shift differences between the Ha and Hb signals remain similar in all cases (ca. 1 ppm). The increased energy barrier for the isomerisation could be attributed to the stabilisation

• . Protonation of DMAN. Protonation equilibria for 2 and 3. Protonation of imine 4a with perchloric acid. Synthesis of investigated substrates (yields obtained by paths a and b are denoted by a corresponding superscript). Preparation of protonated forms of imines 4–7. E/Z-Isomerisation of ketimines 4a–7a

Unnatural α-amino ethyl esters from diethyl malonate or ethyl β-bromo-α-hydroxyiminocarboxylate

• Eloi P. Coutant,
• Vincent Hervin,
• Glwadys Gagnot,
• Candice Ford,
• Racha Baatallah and
• Yves L. Janin

Beilstein J. Org. Chem. 2018, 14, 2853–2860, doi:10.3762/bjoc.14.264

• out that a chromatography was enough to achieve its isomerisation into 2af. Interestingly, we also found out that the excess 2-methylfuran (48af) was not required and that the reaction proceeded much faster and led directly to the α-hydroxyimino ester 2af if tetrabutylammonium bromide was added as a

Synthesis and biological evaluation of 1,2-disubstituted 4-quinolone analogues of Pseudonocardia sp. natural products

• Stephen M. Geddis,
• Teodora Coroama,
• Suzanne Forrest,
• James T. Hodgkinson,
• Martin Welch and
• David R. Spring

Beilstein J. Org. Chem. 2018, 14, 2680–2688, doi:10.3762/bjoc.14.245

• allyl-substituted substrates 13ab and 13bb underwent an isomerisation under the reaction conditions, with the double bond moving into conjugation with the amine to give inseparable mixtures of enamine-type products 14ab and 14bb. Given the likely hydrolytic instability of synthetic precursors possessing

Heterogeneous acidic catalysts for the tetrahydropyranylation of alcohols and phenols in green ethereal solvents

• Ugo Azzena,
• Massimo Carraro,
• Gloria Modugno,
• Luisa Pisano and
• Luigi Urtis

Beilstein J. Org. Chem. 2018, 14, 1655–1659, doi:10.3762/bjoc.14.141

• isomerisation of the acid-sensitive allylic alcohol 1j [34]. To stress the usefulness of a tetrahydropyranylation reaction performed in a green ethereal solvent and in the presence of a heterogeneous acidic catalyst, we realized two one-pot procedures employing either 2-MeTHF or CPME as a solvent. Accordingly