(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• ) and 3-oxa-1,4-BCHs (123) (Figure 19) [58]. The experimental distribution coefficient (logD) of 2- and 3-oxa-1,4-BCHs 122 and 123 is reduced compared to equivalent para-benzene 121 while the kinetic aqueous solubility (KS) is increased. The intrinsic clearance rate in mouse liver microsomes (CLint) is

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• and kinetic experiments or crystallization of the active homodimer will be required to resolve the catalytic mechanism. If NnlA is specific for NNG as suggested by these results, it is worth speculating about potential functions of NNG and other nitramine natural products. Bacterial natural products

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• a side note, it should be mentioned that Hutchings and colleagues reported the hydrochlorination of ethylene with Lewis acids on solid supports [52]. However, this work solely focuses on kinetic studies and is therefore not discussed in this report. Reactions with in situ-generated HCl HCl gas can

A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• for inositol dehydrogenases. (b) Comparison of the hygromycin A (red) and hygromycin A-like (orange) biosynthetic gene clusters. A more detailed comparison can be found in Supporting Information File 1, Table S2. Kinetic parameters for Hyg17. Supporting Information Supporting Information File 36

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• effect remains if the local structure of the linker consisting of an alkyl group and a pyrene group is maintained. Therefore, it is likely that the kinetic behavior of a protein immobilized with a single PASE linker exhibits an activation barrier-type energy surface between the bi-stable conformations on

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• Ruichen Lan Brock Yager Yoonsun Jee Cynthia S. Day Amanda C. Jones Chemistry, Wake Forest University, 1834 Gulley Rd., Winston-Salem, NC, 27109, USA 10.3762/bjoc.20.43 Abstract Kinetic studies on the intramolecular hydroamination of protected variants of 2,2-diphenylpent-4-en-1-amine were carried

• undertaking a 1H NMR spectroscopic kinetic survey of solvent, ligand, and substituent effects on the general reaction 1 → 3 (with a variety of N-protecting groups), to supplement known qualitative observations. We found that, (1) electron-withdrawing phosphines accelerate hydroamination, (2) reactions are

• faster with more Lewis basic urea substrates, (3) mixed solvents are uniquely able to enhance rates, with protic methanol and DCM identified as the best combination, and (4) kinetic isotope effects are variable depending on the concentration of protons in solution with small deuterium KIE’s at low

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• corresponding 2,2-difluoroketones [15]. In related kinetic studies concerning the electrophilic 2-fluorination of 1,3-diketones with Selectfluor [16][17], we demonstrated that the rate-determining step for difluorination was enolization of the intermediate 2-fluoro-1,3-diketone. Monofluorination of 1,3

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• ). This is also the basic compound used in the transformations that are studied in this work due to the high kinetic stability and good solubility ensured by the tert-butyl groups. The largest positive charge of the C(1)–C(2)–C(3) segment is concentrated at the C(2) atom. The charge at the other

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• . An immobilization level of 900 response units (RU) was obtained. A reference surface was always present in flow cell 1, allowing for the subtraction of bulk effects and non-specific interactions with streptavidin. The mammalian-produced CMA1 was injected in single cycle kinetic over the flow cell

• experiments, nine concentrations of LacNAc (Elicityl, #GLY008) from 10 to 0 mM with a dilution coefficient of two supplemented with a fixed concentration of 0.8 µM was injected into the cell surface in multiple cycle kinetic with an association time of 500 s and a dissociation time of 12 s at a flow rate of

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• photochromic N,N'-diacyl derivatives of indigo, first examples of photochromic indigos containing aromatic N,N'-substituents 1984: first report on intra- and intermolecularly bridged photochromic N,N'-substituted indigos (follow-up studies in 1989, 2021) 1985: detailed kinetic studies of the thermal backward Z

• the lack of steric restriction [57]. The thermal Z–E isomerization of N,N'-diacylindigos was further investigated by Sueishi and co-workers in 1985 [58]. In this study, the kinetic experiments for a range of derivatives 9a, 9c, 9d, 9g, 9i–m bearing various N,N'-diacyl substituents in different

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• great attention in organic synthesis. Various methods [9], including reductive hydrogenation [10][11], kinetic resolution [12][13][14], functionalization of indole [15], and de novo construction of chiral 2-substituted indolines, have been developed [16][17][18][19][20]. In recent years, the metal

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• File 6: Experimental procedures and spectral data (NMR, mass spectra) and key kinetic studies. Funding This work received financial support from the Fundação para a Ciência e Tecnologia (FCT Portugal) through the project UIDB/50006/2020 | UIDP/50006/2020.

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• positioning of the [2 + 2] CA or RE step as the rate-determining step may depend upon the structural attributes of the electrophiles and nucleophiles. In 2023, Nielsen et al. conducted an exhaustive kinetic analysis of the [2 + 2] CA–RE reaction involving 4-trimethylsilylethynylaniline and TCNE by leveraging

• between AB and P, from which C1 is generated. Notably, this additional route significantly accelerates the overall reaction. The researchers reported that the conversion of the ABP complex into C1 transpired at a markedly accelerated rate compared with the conversion of AB alone, with a kinetic constant

• 100 °C to generate 30c. Conversely, the transformation of 28b proceeded at 45 °C, and the smallest macrocycle 28a reacted with TCNE at 0 °C. Kinetic investigations revealed that the rate-determining step in the reaction involving 28a–c with TCNE was the second-order [2 + 2] CA step, succeeded by the

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• nanotubular-shaped fullerene inside the peapod. Kinetic analysis with the variable-temperature (VT) SMART-TEM method for the aforementioned C60 dimerization has also been reported by these authors [9]. They concluded that the SWCNT, which accumulates energy by the interaction with the electron beam, activates

• of dimer 1-Cs•+ (see Supporting Information File 1, Figure S9). However, TS-2 is significantly lower in energy. Therefore, in gas phase, dimer 1-D2h•+ is predicted to be the thermodynamic and the kinetic product. Once our methodology was validated, the energy profile for the formation of dimer 1-Cs

• pseudopotentials [16] while valence electron density was expanded in plane waves with a maximum kinetic energy of 400 eV. The model of SWCNT was 29.61 Å long and with a diameter of 13.65 Å, embedded in a box of 30 × 30 Å of vacuum in the plane perpendicular to the nanotube axis. The gas-phase structures were in a

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• (regime 1), the hydrogen generation rate is typically limited by the available photon flux and can be approximated first order with respect to light intensity. For higher photon fluxes, kinetic limitations appear (second regime) since the larger amount of charge carriers present in the photocatalysts

• and reaction rate [42], which was used in this work to fit the experiment results (see Equation 4). where is the average (observed) reaction rate, k* is the kinetic rate constant, θ is the surface coverage of the photocatalyst, α is the optical density, ϕ is the quantum yield, qp is the volumetric

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• with several Michael acceptors [34]. In this work we present the formation of stable zwitterions from the reaction of 2,4-di-tert-butyl-6-(diphenylphosphino)phenol (1) and a variety of different Michael acceptors and disclose kinetic investigations on the zwitterion formation with carbonyl and non

• donors attached to the alkyl substituent of the phosphonium center (Figure 3). This hypothesis is further supported by the observation of two very different chemical shifts for the two amide protons in the 1H NMR spectrum of 2b in CDCl3 giving resonance at 5.21 and 8.58 ppm. Kinetic studies In the next

• . The strong Michael acceptors were methyl acrylate (E = −18.84) bearing a carbonyl-based electron-withdrawing group and acrylonitrile (E = −19.05) featuring a geometrically different electron-withdrawing group. Acrylamide was selected as a weak (E = −21.8), carbonyl-based Michael acceptor. The kinetic

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• a reaction substrate and product or analysis of kinetic studies that include several data points) or overlaying of 2D spectra, for example, to show the different outcomes of related experiments such as COSY/TOCSY or HSQC/HMBC. Students will be enabled to learn these online comparison aspects by

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• reaction enabled us to perform a kinetic analysis of AvaA7, which confirmed that AvaA7 catalyzes the denitrification of 3-diazoavenalumic acid in avenalumic acid biosynthesis. This study deepened our understanding of the highly reducing type II polyketide synthase system as well as the diazotization

• of 3-aminocoumaric acid (3-ACA, 3) and 3-AAA (7) with considerably higher efficiency than AvaA6 in avenalumic acid biosynthesis. We also performed kinetic analysis of AvaA7, which catalyzes the denitrification of 3-DAA (8) in avenalumic acid biosynthesis, using the highly efficient diazotase CmaA6

• diazotization catalyzed by CmaA6 was much higher than that of AvaA6; almost 100% of 3-ACA and 3-AAA were converted to corresponding aromatic diazo compounds 4 and 8, respectively (Figure 3C). Kinetic analysis of AvaA7 catalyzing denitrification of 3-DAA The high conversion efficiency of 3-AAA (7) to 3-DAA (8

Beyond n-dopants for organic semiconductors: use of bibenzo[d]imidazoles in UV-promoted dehalogenation reactions of organic halides

• Kan Tang,
• Megan R. Brown,
• Chad Risko,
• Melissa K. Gish,
• Garry Rumbles,
• Phuc H. Pham,
• Oana R. Luca,
• Stephen Barlow and
• Seth R. Marder

Beilstein J. Org. Chem. 2023, 19, 1912–1922, doi:10.3762/bjoc.19.142

• . −2 V vs FeCp2+/0, yet the dimers are reasonably stable to air due to the kinetic barriers associated with the coupling of electron-transfer and bond-cleavage reactions [26]. Here we demonstrate that (N-DMBI)2 and (Cyc-DMBI)2 (Figure 1c) can be used to accomplish dehalogenation of benzyl, alkyl, and

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• forward. Decarboxylation of the resulting intermediate IV then affords the chiral addition product 6. This enolate addition is in kinetic competition with simple decarboxylation, yielding thioacetate 7. Under most conditions, this decarboxylation is favored. Anion–π catalysis selectively accelerates the

Benzoimidazolium-derived dimeric and hydride n-dopants for organic electron-transport materials: impact of substitution on structures, electrochemistry, and reactivity

• Swagat K. Mohapatra,
• Khaled Al Kurdi,
• Samik Jhulki,
• Georgii Bogdanov,
• John Bacsa,
• Maxwell Conte,
• Tatiana V. Timofeeva,
• Seth R. Marder and
• Stephen Barlow

Beilstein J. Org. Chem. 2023, 19, 1651–1663, doi:10.3762/bjoc.19.121

• wide range of semiconductors, they must exhibit low ionization energies and thus air sensitivity. One approach to circumvent this issue is to identify systems where the electron-transfer process is coupled to other chemical reactions, increasing the kinetic stability of the dopant to air, and thus

• previously reported for the Y = cyclohexyl, R = R' = H derivative 1e2 (1.640(4) Å) [14], despite DFT calculations indicating that the former dimer is considerably more weakly bonded [8][14] and kinetic evidence for the “cleavage-first” mechanism occurring in doping reactions using 1b2 but not 1e2 (see below

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• the DOPA-metal complex helps mussel adhere onto inorganic surfaces (Scheme 3). 1.2 Conventional radical polymerization Radical polymerization, which IUPAC defines as ‘A chain polymerization in which the kinetic-chain carriers are radicals’ [13], is the most widely used reaction in polymer industry. As

• cables are increased from 70 °C to 90 °C and 150 °C to 230 °C, respectively. Besides that, XLPE shows a more rubber-like behavior [126]. As the peroxide crosslinking process is industrially important, multiple kinetic models have been established to understand the reaction between polymers, peroxides

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• an effective catalysis system (Scheme 29) [63]. Kinetic studies in this cross coupling-reaction indicated that N-(arylthio)succinimides 1 with electron-deficient arene 4 undergoe thioarylation catalyzed by Fe(NTf2)3. Related molecules bearing an electron-rich arene showed an autocatalytic pathway

Application of N-heterocyclic carbene–Cu(I) complexes as catalysts in organic synthesis: a review

• Nosheen Beig,
• Varsha Goyal and
• Raj K. Bansal

Beilstein J. Org. Chem. 2023, 19, 1408–1442, doi:10.3762/bjoc.19.102

• the simplicity of their synthesis and the modularity of their stereoelectronic properties, NHCs have unquestionably emerged as one of the most fascinating and well-known species in chemical science. The remarkable stability of NHCs can be attributed to both kinetic as well as thermodynamic effects

• structure of an NHC (8) is shown in Figure 1. NHCs having three nitrogen atoms in the five-membered ring, e.g., 1,2,4-triazolylidenes have also been prepared [6]. Both kinetic as well as thermodynamic effects contribute to the remarkable stability of the NHC ring. The presence of bulky substituent groups on

• the nitrogen atoms adjacent to the carbene center result in kinetic stabilization of the NHC suppressing its dimerization to the corresponding olefin (the Wanzlick equilibrium). On the other hand, thermodynamic stabilization results due to donation of lone pair(s) electrons of the adjacent nitrogen