Monitoring carbohydrate 3D structure quality with the Privateer database

• Jordan S. Dialpuri,
• Haroldas Bagdonas,
• Lucy C. Schofield,
• Phuong Thao Pham,
• Lou Holland and
• Jon Agirre

Beilstein J. Org. Chem. 2024, 20, 931–939, doi:10.3762/bjoc.20.83

• to improve. Because the methodology included in PDB-REDO had been affected by the lack of automatic support that plagued general purpose crystallographic model building and refinement software [4], carbohydrate-specific methods have been gradually introduced over the years [22][23]. Whilst Privateer

Direct synthesis of acyl fluorides from carboxylic acids using benzothiazolium reagents

• Lilian M. Maas,
• Alex Haswell,
• Rory Hughes and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2024, 20, 921–930, doi:10.3762/bjoc.20.82

• acyl fluoride products directly from carboxylic acids. Here, we report the results of this study, which led to the development of a practical and high yielding methodology for the synthesis of acyl fluorides and their subsequent one-pot conversion into amides. Moreover, by virtue of BT-SCF3’s ability

• % 19F NMR yields, respectively. Furthermore, the widely available drug molecules naproxen and ibuprofen could be efficiently converted into their acyl fluoride derivatives 2k and 2l in 97% and quantitative yields, respectively. To improve the practicality of the methodology and to avoid the often

Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• Abstract The development of a new and straightforward chemoselective method for the synthesis of uracil-based structures by combining Suzuki–Miyaura and Sonogashira–Hagihara cross-coupling is reported. The methodology was applied to synthesize a series of novel compounds. The tolerance of the combination

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• sequence of saponification (to 127), decarboxylative halogenation (to 128 and 130) and strain-inducing substitution then forms [3.1.1]propellane (129). Anderson and co-workers have reported a new synthesis of [3.1.1]propellane (129) based on the dibromocyclopropanation methodology typically used to access

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• Table 9). The methodology was applied to a significant number of substrates with many reactions being carried out on a ≫1 mmol scale (Scheme 22). The hydrochlorination of styrene (3) was even carried out on a one-mole scale demonstrating the robustness of this procedure (product 4). Not unexpectedly

• allowed carrying out the hydrochlorination of terminal aliphatic alkenes at room temperature. Under these conditions even a nitrile group could be preserved (46). The FeCl3-promoted hydrochlorination with HCl gas was previously reported by Mayo and Scher [31][77]. This methodology is of great practical

• functional tolerance of this methodology is striking. Especially examples with sensitive aldehyde (175), nitrile (176), N-Boc (177), furan (178), thiophene (179), and even tertiary alcohols (180 and 181) are impressive. The primary drawback of this methodology lies in the synthesis of the ligand L3

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

Regioselective quinazoline C2 modifications through the azide–tetrazole tautomeric equilibrium

• Dāgs Dāvis Līpiņš,
• Andris Jeminejs,
• Una Ušacka,
• Anatoly Mishnev,
• Māris Turks and
• Irina Novosjolova

Beilstein J. Org. Chem. 2024, 20, 675–683, doi:10.3762/bjoc.20.61

• , which is present in pharmaceutically active substances. The methodology application is showcased by transforming the obtained 4-azido-6,7-dimethoxy-2-sulfonylquinazolines into the α1-adrenoceptor blockers terazosin and prazosin by further C2-selective SNAr reaction and azide reduction. Keywords

• valuable precursors for the C2-regioselective modification in quinazolines. Furthermore, the developed methodology was valorized by successfully employing it in the synthesis of adrenoblockers terazosin and prazosin. Approaches for quinazoline modifications at the C2 and C4 positions. Attempts toward

Palladium-catalyzed three-component radical-polar crossover carboamination of 1,3-dienes or allenes with diazo esters and amines

• Geng-Xin Liu,
• Xiao-Ting Jie,
• Ge-Jun Niu,
• Li-Sheng Yang,
• Xing-Lin Li,
• Jian Luo and
• Wen-Hao Hu

Beilstein J. Org. Chem. 2024, 20, 661–671, doi:10.3762/bjoc.20.59

• -light-mediated palladium-catalyzed three-component radical-polar crossover carboamination of 1,3-dienes or allenes with diazo esters and amines, affording unsaturated γ- and ε-amino acid derivatives with diverse structures. In this methodology, the diazo compound readily transforms into a hybrid α-ester

• diverse alkenes followed by a diradical coupling or radical addition process to achieve the difunctionalization (Scheme 1b, middle) [32][33][34][35][36][37]. However, to the best of our knowledge, the methodology involving the addition of a carbon radical from a diazo compound onto the double bond of an

• toward the allylpalladium species would afford the desired unsaturated γ- and ε-AA derivatives. This methodology would represent the first reaction mode for the difunctionalization of alkenes with diazo compounds via a radical-polar crossover process. Results and Discussion As summarized in Table 1, we

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• simplicity, this strategy yielded six previously unreported meroterpenoids, demonstrating the effectiveness of our methodology in discovering new natural products. Given the increasing elucidation of fungal meroterpenoid pathways in recent years, similar approaches could be applied to other meroterpenoid

HPW-Catalyzed environmentally benign approach to imidazo[1,2-a]pyridines

• Luan A. Martinho and
• Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2024, 20, 628–637, doi:10.3762/bjoc.20.55

• is known for its chemical and thermal stability. Herein, we report a straightforward approach to the GBB-3CR using HPW as catalyst in ethanol under microwave (μw) heating. This convenient environmentally benign methodology is broad in scope, provides the heterobicyclic products in high yields (up to

• 99%), with a low catalyst loading (2 mol %) in only 30 minutes, and allows the successful use of aliphatic aldehydes, substrates not so frequently explored with most usual catalysts for this reaction. Furthermore, the aforementioned advantages make this methodology very attractive and superior to the

• catalyst in ethanol under microwave (μw) heating. This convenient environmentally benign methodology is broad in scope, provides the heterobicyclic products in high yields (up to 99%), with a low catalyst loading (2 mol %) in only 30 minutes. Results and Discussion A search in the literature revealed a

Entry to new spiroheterocycles via tandem Rh(II)-catalyzed O–H insertion/base-promoted cyclization involving diazoarylidene succinimides

• Alexander Yanovich,
• Anastasia Vepreva,
• Ksenia Malkova,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 561–569, doi:10.3762/bjoc.20.48

• extension of this methodology. This study is aimed at the development of convenient protocols for the synthesis of new spiroheterocycles via tandem Rh(II)-catalyzed OH insertion/base-promoted cyclization using DAS and various OH substrates containing an activated multiple bond (propiolic and allenic acids

• earlier and the synthetic methodology investigated in this work. An initial example on Rh(II)-catalyzed O–H insertion/base-promoted cyclization involving diazo compound 1a. Tandem Rh2(esp)2-catalyzed O–H insertion/base-promoted cyclization involving DAS 1 and various propiolic acids; PMP = 4-methoxyphenyl

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• reactivities in this methodology, affording low product yields, which limits some applications. The selectivity of this protocol was also investigated (Scheme 4). It was surprisingly observed that aromatic aldehydes produced the corresponding BIM as the major product in the presence of other substrates

• solvent (Scheme 6) [90]. The scope of this methodology was tested with a variety of substituted aliphatic, aromatic or heterocyclic aldehydes and ketones, affording excellent results. Product conversion rates ranged from 81%, for the less reactive ketones, to 100% for activated aromatic aldehydes bearing

• %) compared to Bandgar’s approach, while achieving product yields of 72–90%. Nonetheless, the slower reaction rates (7–10 min) and the limitation of using only aromatic aldehydes, limited the substrate scope and held back more widespread applications of this methodology [91]. In 2014, Liang et al

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• -halides [115]. Their optimized reaction conditions required a NiII precursor, 2,2’-bipyridine (bpy) as ligand, silver nitrate (AgNO3) as an additive and the combination of a magnesium (Mg) sacrificial anode and a RVC cathode (Scheme 35A). A crucial discovery in advancing this methodology was the in situ

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• have successfully optimized a modular approach for the synthesis of lipid II and its analogues, including variants with distinct prenyl-chain lengths. The key to this methodology lies in the optimization of glycosylation conditions, utilizing readily available glycosyl donors, which is a pivotal step

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• Tsvelikhovsky introduced an efficient synthetic strategy to construct diverse dibenzodiazepinones through a sequential methodology consisting of a B–H coupling between o-carbonylanilines and 1,2-dihaloarene derivatives providing access to key precursors that undergo a tandem amination–intramolecular cyclization

• surrogate through the in situ formation of an o-(2-bromophenyl)aminoaniline intermediate (Scheme 1d). It should be noted these target compounds have been of great interest to our group and in 2015 we reported a proposed novel methodology for the synthesis of dibenzodiazepines [18], however, upon later

• good yield (this represented a formal synthesis to clozapine [26], if the procedure of Rao [27] is used, which entails heating 4e with 1-methylpiperidine and Ti(IV)Cl4, Scheme 4). Also compound 4a can be transformed to Hügel's 1,2,3-triazole-DBDAP using the methodology described in their report (Scheme

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• were obtained in high yields (92‒99%), which demonstrated the practical value of this methodology. Moreover, the reaction showed a good tolerance to sterically hindered substrates like trimethylbenzamide, affording the corresponding brominated product in 70% yield (3la). Also the substrate derived from

• primary alkyl bromides is higher than that of secondary alkyl bromides, while the reactivity of tertiary alkyl bromides is the lowest (2a–c, 2g–i). Finally, dibromomethane (2j) proceeded well in the reaction, furnishing 3aa in 65% yield. As showcased in Scheme 4, this methodology is also applicable to

• , we have developed an efficient and practical method for the synthesis of C5-brominated 8-aminoquinoline amides in good to excellent yields via a copper-promoted selective bromination using alkyl bromides as the bromide source. This methodology is scalable, proceeds well with various aromatic and

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• derivatives. UV–vis spectra of substrates; [1a] 0.33 M, [2a] 0.11 M. Selected works for the construction of dihydropyrido[1,2-a]indolones and current methodology. Substrate scope of the cascade reaction. Radical trapping experiment. Plausible reaction mechanism. Optimization of reaction conditions.a

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• + 2] cycloaddition in phase 1 We analyzed in detail the energy profile for the first step in the dimerization process, that is, the reversible [2 + 2] cycloaddition to obtain dimers 1-Cs and 1-D2h. We initially considered dimerization in the gas phase to check the reliability of our methodology

• of dimer 1-Cs•+ (see Supporting Information File 1, Figure S9). However, TS-2 is significantly lower in energy. Therefore, in gas phase, dimer 1-D2h•+ is predicted to be the thermodynamic and the kinetic product. Once our methodology was validated, the energy profile for the formation of dimer 1-Cs

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• ; structure elucidation; Introduction For the validation of molecular structures, nuclear magnetic resonance (NMR) spectroscopy is an indispensable methodology in the daily routine of synthetic chemistry laboratories. Arguably, NMR experiments serve as the ‘eye of the synthetic chemist’ because they allow a

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• developed for the synthesis of biphenylene-containing azaacene structures [47] (Scheme 13). The methodology used in this study closely resembled their previous work (Scheme 9) [43]. The method used offered a distinct advantage compared to previous approaches [45], as it enabled the synthesis of not only

N-Boc-α-diazo glutarimide as efficient reagent for assembling N-heterocycle-glutarimide diads via Rh(II)-catalyzed N–H insertion reaction

• Grigory Kantin,
• Pavel Golubev,
• Alexander Sapegin,
• Alexander Bunev and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2023, 19, 1841–1848, doi:10.3762/bjoc.19.136

• have been obtained. Glutarimide-based immunomodulatory drugs (IMiDs) and CRBN ligands. Examples of α-carbonyl NH-heterocycles for which N–H insertion products could not be obtained. Main literature approaches towards α-hetaryl glutarimides 1 (routes A and B) and new “diazo” methodology based on Rh(II

GlAIcomics: a deep neural network classifier for spectroscopy-augmented mass spectrometric glycans data

• Thomas Barillot,
• Baptiste Schindler,
• Baptiste Moge,
• Elisa Fadda,
• Franck Lépine and
• Isabelle Compagnon

Beilstein J. Org. Chem. 2023, 19, 1825–1831, doi:10.3762/bjoc.19.134

• probabilistic deep neural network (Bayesian deep neural networks [12]) to support automated monosaccharide recognition for carbohydrate sequencing. We obtained a highly performing algorithm that we called "GlAIcomics", specifically trained on carbohydrates. Methodology Data production Our carbohydrate analysis

Synthetic approach to 2-alkyl-4-quinolones and 2-alkyl-4-quinolone-3-carboxamides based on common β-keto amide precursors

• Yordanka Mollova-Sapundzhieva,
• Plamen Angelov,
• Danail Georgiev and
• Pavel Yanev

Beilstein J. Org. Chem. 2023, 19, 1804–1810, doi:10.3762/bjoc.19.132

• substituents at the C-2 position. As a way of expanding the scope of this methodology, we resorted to the α-C-acylation of β-enamino amides, a reliable reaction, the utility of which we have already demonstrated in other contexts [62][63]. Results and Discussion As the starting point of our synthetic

Recent advancements in iodide/phosphine-mediated photoredox radical reactions

• Tinglan Liu,
• Yu Zhou,
• Junhong Tang and
• Chengming Wang

Beilstein J. Org. Chem. 2023, 19, 1785–1803, doi:10.3762/bjoc.19.131

• catalysis has risen to prominence as an incredibly effective methodology, establishing itself as a powerful tool for crafting various C–X (X = C, N, O, F, Cl…) bonds owing to its advantageous traits, such as sustainability, practicality, and environmental compatibility [5]. Despite its broad synthetic

• readily accessible redox-active esters 3 and cost-effective NaI/PPh3 photoactivators under mild reaction conditions (Scheme 8) [14]. The methodology exhibited remarkable efficacy when applied to a wide range of natural products and pharmaceuticals, significantly expanding the synthetic utility of this

• replenished the NaI/PPh3 catalyst, completing the catalytic cycle. Very recently, Zhong and his colleagues proposed a decarboxylative alkylation method for vinylcyclopropanes 46 using alkyl N-(acyloxy)phthalimide esters 3. This methodology enabled the synthesis of variously substituted 2-alkylated 3,4

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• -Aldrich and Vetec in the highest purity available and used without further purification. Syntheses of the compounds Compounds were synthesized by modifying the existing methodology in the literature [50]. The compounds were prepared by condensation between 3,4,5-trimethoxybenzoic acid hydrazide (TMP, 1.0