Light-responsive rotaxane-based materials: inducing motion in the solid state

• Adrian Saura-Sanmartin

Beilstein J. Org. Chem. 2023, 19, 873–880, doi:10.3762/bjoc.19.64

• scaffolds [11]. In particular, rotaxanes and pseudorotaxanes have led to a greater number of applications due to their inherent dynamics and the switching possibility through a rational design [12]. Thus, rotaxane-based materials have attracted the interest of the scientific community due to their enhanced

• to allow an effective molecular motion in the crystal [40][41][42][43]. The light-triggered crystal deformation of a series of [2]pseudo- and [3]pseudorotaxanes have been reported by Horie and coworkers [44]. It should be pointed out that although the examples highlighted in this section are

• pseudorotaxanes, the supramolecular interactions between the counterparts are retained, thus constituting stable intertwined species showing analogous properties to those of rotaxanes. The pseudorotaxanes 1 were constituted by a dibenzo-24-crown-8 cyclic component and an ammonium-based thread functionalized with

BINOL as a chiral element in mechanically interlocked molecules

• Matthias Krajnc and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2022, 18, 508–523, doi:10.3762/bjoc.18.53

• containing electron-rich hydroquinone or 1,5-dioxynaphthalene units (macrocycles 15/21/23), together with suitable dicationic bis-bipyridinium precursors (16/19). Self-assembly of the corresponding pseudorotaxanes by π–π stacking, following by capping with dibromo-p-xylene 17 gave rise to a series of chiral

• , together with the synthesis of the corresponding BINOL-based MIMs. Some selected examples of pseudorotaxanes and pseudocatenanes are not included in this review [49][50][51]. 2.1 (Mechano)intramolecular chirality transfer Takata and co-workers reported two examples for a chirality transfer via the

• )-52/(S)-53 were mixed with the dialkynylated amine 54 to give the pseudorotaxanes based on ammonium–phosphate interactions. Subsequent stoppering with bulky azides 55a/b gave rotaxanes (S)-56a/b and (S)-57a/b in yields of 28–58%. These catalysts differ in the length of the axle (n = 0 or 1, for a or b

Construction of pillar[4]arene[1]quinone–1,10-dibromodecane pseudorotaxanes in solution and in the solid state

• Xinru Sheng,
• Errui Li and
• Feihe Huang

Beilstein J. Org. Chem. 2020, 16, 2954–2959, doi:10.3762/bjoc.16.245

• 450001, P. R. China 10.3762/bjoc.16.245 Abstract We report novel pseudorotaxanes based on the complexation between pillar[4]arene[1]quinone and 1,10-dibromodecane. The complexation is found to have a 1:1 host–guest complexation stoichiometry in chloroform but a 2:1 host–guest complexation stoichiometry

• the further capping of the pseudorotaxanes to construct rotaxanes. Keywords: host–guest chemistry; pillar[4]arene[1]quinones; pillararenes; pseudorotaxanes; supramolecular chemistry; Introduction Relying on the research of basic science, supramolecular chemistry has become an important mean for

• , including molecular switches, molecular logic gates, molecular machines, supramolecular polymers, etc. [6][7][8][9][10][11]. Pseudorotaxanes not only are used as the supramolecular precursors for the synthesis of rotaxanes and catenanes but also play an important role in the construction of supramolecular

Thermodynamic and electrochemical study of tailor-made crown ethers for redox-switchable (pseudo)rotaxanes

• Henrik Hupatz,
• Marius Gaedke,
• Hendrik V. Schröder,
• Julia Beerhues,
• Arto Valkonen,
• Fabian Klautzsch,
• Sebastian Müller,
• Felix Witte,
• Kari Rissanen,
• Biprajit Sarkar and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2020, 16, 2576–2588, doi:10.3762/bjoc.16.209

• described with regard to their potential to form redox-switchable rotaxanes. A combination of isothermal titration calorimetry and voltammetric techniques reveals correlations between the binding energies and redox-switching properties of the corresponding pseudorotaxanes with secondary ammonium ions. For

• two different weakly coordinating anions, a surprising relation between the enthalpic and entropic binding contributions of the pseudorotaxanes was discovered. These findings were applied to the synthesis of an NDI-[2]rotaxane, which retains similar spectroelectrochemical properties compared to the

• . Results and Discussion Design considerations The nine crown ether wheels and two ammonium axles used in this study are depicted in Figure 1. Previously, we investigated the thermodynamic and electrochemical properties of pseudorotaxanes made from TTFC8 and exTTFC8 in two separate studies [35][37]. Herein

Multiple threading of a triple-calix[6]arene host

• Veronica Iuliano,
• Roberta Ciao,
• Emanuele Vignola,
• Carmen Talotta,
• Patrizia Iannece,
• Margherita De Rosa,
• Annunziata Soriente,
• Carmine Gaeta and
• Placido Neri

Beilstein J. Org. Chem. 2019, 15, 2092–2104, doi:10.3762/bjoc.15.207

• , daisy-chain pseudorotaxanes, olympiadane, Janus rotaxanes [5]) is generally obtained through a template-approach [9] exploiting the threading process between linear (axle) and macrocyclic (wheel) components. In order to synthesize high-order interpenetrated architectures, much attention has been

• (Figure 3c), were present both the 7+6 and (7+)26 pseudorotaxanes, as confirmed by the ESI-FT-ICR mass spectrum in Figure 5, which revealed the presence of two ion peaks at 3442.2979 (calcd 3442.2965 for C236H308NO18+) indicative of the formation of the single-charged 7+6 and double-charged (7+)26 pseudo

• abundant species. Therefore, these data indicate that in a 1:3 mixture of 6 and 7+·TFPB− in CDCl3 (Figure 4c), both (7+)26 and (7+)36 pseudorotaxanes are present. When the 7+/6 ratio was increased from 3:1 to 6:1 (Figure 4e–g) then the benzylic resonance at 5.10 ppm attributable to the triple-threaded

Selective detection of DABCO using a supramolecular interconversion as fluorescence reporter

• Indrajit Paul,
• Debabrata Samanta,
• Sudhakar Gaikwad and
• Michael Schmittel

Beilstein J. Org. Chem. 2019, 15, 1371–1378, doi:10.3762/bjoc.15.137

• conversion that allowed detection of the product by shape recognition [25]. Unfortunately, the cage-to-cage transformation proved to be rather slow. Schalley used the addition of both, guests and hosts, to stimulate a cascaded folding of cucurbit[7,8]uril pseudorotaxanes [26]. Neither of the above examples

Tetrathiafulvalene – a redox-switchable building block to control motion in mechanically interlocked molecules

• Hendrik V. Schröder and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2018, 14, 2163–2185, doi:10.3762/bjoc.14.190

• derivatives I and J [55][56][57]. The incorporation of these symmetric species into MIMs often circumvents complex isomeric mixtures. 3. Pseudorotaxanes and inclusion complexes: on the way to TTF-based MIMs Pseudorotaxanes have the general form of a molecular thread encircled by a macrocycle. The difference

• to rotaxanes is that the axle does not have bulky stopper groups that prevent the deslipping of the wheel. Thus, a pseudorotaxane forms by non-covalent interactions between host and guest without a mechanical bond. Pseudorotaxanes are important precursors of MIMs from which the construction of

• rotaxanes is achieved by stoppering reactions, while catenanes can be made by macrocyclization of the pseudorotaxane thread. Therefore, we discuss in the following section reports of important pseudorotaxanes and inclusion complexes that contributed to major developments of TTF-based MIMs and AMMs. The

Calix[6]arene-based atropoisomeric pseudo[2]rotaxanes

• Carmine Gaeta,
• Carmen Talotta and
• Placido Neri

Beilstein J. Org. Chem. 2018, 14, 2112–2124, doi:10.3762/bjoc.14.186

• Carmine Gaeta Carmen Talotta Placido Neri Dipartimento di Chimica e Biologia " A. Zambelli", Università di Salerno, Via Giovanni Paolo II 132, 84084 Fisciano (Salerno), Italy 10.3762/bjoc.14.186 Abstract Some examples of atropoisomeric pseudorotaxanes in which the isomerism arises by the

• different conformations adopted by the wheel are reported here. Upon threading hexahexyloxycalix[6]arene 1 with ammonium axles 2+ or 3+, bearing biphenyl or trifluoromethylbenzyl moieties, respectively, two atropoisomeric pseudorotaxanes were formed in which the calix[6]-wheel 1 adopts the 1,2,3-alternate

• interconversion between the 1,2,3-alternate and cone conformations of the calixarene wheel 1 in both 2+1 pseudorotaxanes. Previously reported data [34] clearly showed that the mechanism “b” in Figure 5 can be ruled out because the presence of an axle inside the cavity of 1 impedes the "through-the-annulus

Complexation of molecular clips containing fragments of diphenylglycoluril and benzocrown ethers with paraquat and its derivatives

• Leonid S. Kikot',
• Catherine Yu. Kulygina,
• Alexander Yu. Lyapunov,
• Svetlana V. Shishkina,
• Roman I. Zubatyuk,
• Tatiana Yu. Bogaschenko and
• Tatiana I. Kirichenko

Beilstein J. Org. Chem. 2017, 13, 2056–2067, doi:10.3762/bjoc.13.203

• observed for other complexes of the clips 1–5 with paraquat derivatives 8–10. This is typical for most pseudorotaxanes and catenanes and an evidence of the fairly stable host–guest inclusion complexes [33][34]. The ability of the obtained clips 1–5 to act as receptors for the guests 7–10 in solution was

Supramolecular structures based on regioisomers of cinnamyl-α-cyclodextrins – new media for capillary separation techniques

• Gabor Benkovics,
• Ondrej Hodek,
• Martina Havlikova,
• Zuzana Bosakova,
• Pavel Coufal,
• Milo Malanga,
• Eva Fenyvesi,
• Andras Darcsi,
• Szabolcs Beni and
• Jindrich Jindrich

Beilstein J. Org. Chem. 2016, 12, 97–109, doi:10.3762/bjoc.12.11

• will result in changed sieving effects, different selector–analyte interactions and in modulated separation selectivity. CDs have been used as the host component for the construction of various interesting supramolecular structures such as pseudorotaxanes, rotaxanes, supramolecular dimers, oligomers

Self-assemblies of γ-CDs with pentablock copolymers PMA-PPO-PEO-PPO-PMA and endcapping via atom transfer radical polymerization of 2-methacryloyloxyethyl phosphorylcholine

• Jing Lin,
• Tao Kong,
• Lin Ye,
• Ai-ying Zhang and
• Zeng-guo Feng

Beilstein J. Org. Chem. 2015, 11, 2267–2277, doi:10.3762/bjoc.11.247

• -assembled with varying amounts of γ-CDs to prepare poly(pseudorotaxanes) (PPRs). When the concentration of γ-CDs was lower, the central PEO segment served as a shell of the micelles and was preferentially bent to pass through the γ-CD cavity to construct double-chain-stranded tight-fit PPRs characterized by

• character and deformable cavity size allow for the self-assembly or inclusion of various polymer chains to generate poly(pseudorotaxanes) (PPRs) or polyrotaxanes (PRs) after endcapping with bulky stoppers. Since Harada et al. first reported the α-CD-based single-chain-stranded PPRs constructed from the

Advances in the synthesis of functionalised pyrrolotetrathiafulvalenes

• Luke J. O’Driscoll,
• Sissel S. Andersen,
• Marta V. Solano,
• Dan Bendixen,
• Morten Jensen,
• Troels Duedal,
• Jess Lycoops,
• Cornelia van der Pol,
• Rebecca E. Sørensen,
• Karina R. Larsen,
• Kenneth Myntman,
• Christian Henriksen,
• Stinne W. Hansen and
• Jan O. Jeppesen

Beilstein J. Org. Chem. 2015, 11, 1112–1122, doi:10.3762/bjoc.11.125

• complex alkylating agents can be successfully used in place of methyl iodide. For example, functionalised ethylene glycol oligomers have been used in the preparation of rotaxanes and pseudorotaxanes [28][41][42][45]. Although CsOH·H2O is most commonly used, other bases are also known to remove the

• thioether-functionalised MPTTFs to be prepared, including the addition of large ethylene glycol-based substituents utilised in the preparation of rotaxanes and pseudorotaxanes. N-Arylation of MPTTFs is an area of increasing interest and can be achieved using a copper-mediated reaction. We have applied this

Discrete multiporphyrin pseudorotaxane assemblies from di- and tetravalent porphyrin building blocks

• Mirko Lohse,
• Larissa K. S. von Krbek,
• Sebastian Radunz,
• Suresh Moorthy,
• Christoph A. Schalley and
• Stefan Hecht

Beilstein J. Org. Chem. 2015, 11, 748–762, doi:10.3762/bjoc.11.85

• and their derived pseudorotaxanes have been studied by a combination of NMR spectroscopy in solution and ESI mass spectrometry in the gas phase. By simple mixing of the components the formation of discrete dimeric and trimeric (metallo)porphyrin complexes predominates, in accordance to binding

• ; pseudorotaxanes; Introduction Supramolecular chemistry [1], the chemistry “beyond the molecule“ [2], has immensely reshaped the concepts of chemistry by putting the intermolecular interaction into the focus. Different fields of chemistry, from materials [3][4][5][6] and analytical sciences [7][8][9][10][11][12

• functional building blocks, the formation of specific multiply threaded pseudorotaxanes was achieved, thereby demonstrating the ability to program complex multicomponent self-assembly [74][75]. Results and Discussion Synthesis The synthesis of the two ammonium-substituted porphyrins A2 and A4 was performed

First principle investigation of the linker length effects on the thermodynamics of divalent pseudorotaxanes

• Andreas J. Achazi,
• Doreen Mollenhauer and
• Beate Paulus

Beilstein J. Org. Chem. 2015, 11, 687–692, doi:10.3762/bjoc.11.78

• energies of association (Gibbs free (binding) energies) for divalent crown-8/ammonium pseudorotaxanes are determined by investigating the influence of different linkers onto the binding. Calculations are performed with density functional theory including dispersion corrections. The translational

• ; Gibbs energy; pseudorotaxanes; solvent effects; COSMO-RS; Introduction If two or more binding sites of a molecular system are involved in the association process, the interaction energy can be significantly increased compared to the sum of the individual binding energies. This effect is called

• multivalency [1] and is mainly observed in biochemical systems [2][3][4][5][6][7][8][9]. But the concept of multivalency can be transferred to supramolecular assemblies with suitable building blocks [10][11][12] including (pseudo)rotaxanes [13][14][15] as well. One common building block for pseudorotaxanes is

Articulated rods – a novel class of molecular rods based on oligospiroketals (OSK)

• Pablo Wessig,
• Roswitha Merkel and
• Peter Müller

Beilstein J. Org. Chem. 2015, 11, 74–84, doi:10.3762/bjoc.11.11

• molecules [27]. Therefore we hypothesized that CDs, which are threaded on articulated rods and thus form pseudorotaxanes [28], could influence the STR/FOL equilibrium, because the folding should be impaired (Scheme 12). Furthermore, we expected that the effect should depend on the size of the cavity of the

• : 32c, quant.). Stretched-folded equilibrium of pyrene labelled AR 32a. Formation of pseudorotaxanes from AR 32a and cyclodextrines. Supporting Information Supporting Information File 14: Experimental procedures and compound characterization.

Substitution effect and effect of axle’s flexibility at (pseudo-)rotaxanes

• Friedrich Malberg,
• Jan Gerit Brandenburg,
• Werner Reckien,
• Oldamur Hollóczki,
• Stefan Grimme and
• Barbara Kirchner

Beilstein J. Org. Chem. 2014, 10, 1299–1307, doi:10.3762/bjoc.10.131

• rotaxanes are obtained from template synthesis [6][7]. Bulky stopper groups at the ends of the axle prevent the wheels from dethreading. Rotaxanes without their stopper groups are often referred to as pseudorotaxanes. It is implicitly assumed that these stopper functionalities have no further influence on

• computational energy profile [22]. The formation of α-cyclodextrin-based [3]pseudorotaxanes in the gas phase was studied by means of density functional calculations [23]. Molecular mechanics calculations were used for a free energy calculation of an α-cyclodextrin rotaxane system and for the investigation of

• flexible axle (SB) binds stronger to the wheel than the less flexible ethylene-containing axle (DB) for all pseudorotaxanes studied. The difference between the substituted DB and SB amounts to 1–3 kcal/mol. Substituents with −M/−I effect bind more weakly than those with +M/+I effect, which fits neatly to

Synthesis of multivalent host and guest molecules for the construction of multithreaded diamide pseudorotaxanes

• Nora L. Löw,
• Egor V. Dzyuba,
• Boris Brusilowskij,
• Lena Kaufmann,
• Elisa Franzmann,
• Wolfgang Maison,
• Emily Brandt,
• Daniel Aicher,
• Arno Wiehe and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2012, 8, 234–245, doi:10.3762/bjoc.8.24

• Berlin, Germany 10.3762/bjoc.8.24 Abstract A series of di-, tri- and tetravalent axles and wheels for the synthesis of pseudorotaxanes bearing the tetralactam macrocycle/diamide axle binding motif was prepared. Starting from iodinated monovalent precursors, Sonogashira cross-coupling reactions were

• quite rigid connections between linker and binding sites. Although a quantitative assessment of binding strengths was not possible by NMR titration experiments, typical and significant shifts of the signals of the diamide moiety indicate qualitatively the formation of pseudorotaxanes from the axle and

• wheel precursors. Keywords: multivalency; pseudorotaxanes; Sonogashira coupling; supramolecular chemistry; tetralactam macrocycles; Introduction Synthetic supramolecular complexes have the great potential to put those concepts to the test that govern much of the noncovalent chemistry in nature. Among

Supramolecular chemistry II

• Christoph A. Schalley

Beilstein J. Org. Chem. 2011, 7, 1541–1542, doi:10.3762/bjoc.7.181

• Beilstein Journal of Organic Chemistry [1]. This first series of articles had quite a broad scope ranging from encapsulation and carbohydrate, peptide, anion and ammonium ion binding, through chiral recognition, the formation of pseudorotaxanes and template effects, all the way to allosteric binding to

Molecular recognition of organic ammonium ions in solution using synthetic receptors

• Andreas Späth and
• Burkhard König

Beilstein J. Org. Chem. 2010, 6, No. 32, doi:10.3762/bjoc.6.32

Templated versus non-templated synthesis of benzo-21-crown-7 and the influence of substituents on its complexing properties

• Wei Jiang and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2010, 6, No. 14, doi:10.3762/bjoc.6.14

• more efficient than the intramolecular macrocyclization without template. Pseudorotaxanes form with secondary ammonium ions bearing at least one alkyl chain narrow enough to slip into the crown ether. Substitution on benzo-21-crown-7 or on the secondary ammonium axle alters the binding affinity and