Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• mixture which were then purified to give the desired α-anomers. Thioglycosides 1c, 1d, and 1f were isolated purely as β-anomers due to anchimeric assistance from the C2 N-acetyl or N-Troc groups. In glycosyl acceptors, the first amino acid of the lipid II pentapeptide, Ala, was incorporated as a 2

Synthesis of protected precursors of chitin oligosaccharides by electrochemical polyglycosylation of thioglycosides

• Md Azadur Rahman,
• Kana Kuroda,
• Hirofumi Endo,
• Norihiko Sasaki,
• Tomoaki Hamada,
• Hiraku Sakai and
• Toshiki Nokami

Beilstein J. Org. Chem. 2022, 18, 1133–1139, doi:10.3762/bjoc.18.117

• thioglycosides as monomer is described. Oligosaccharides up to the hexasaccharide were synthesized under optimized reaction conditions. Further, a modified method enabled the synthesis of oligosaccharides up to the octasaccharide by repeating electrolysis with additional monomers. The mechanism of the

• polyglycosylation via the electrochemical activation of thioglycosides is a practical approach for the preparation of chitin oligosaccharides. Hashimoto and co-workers have already reported the synthesis of protected precursors of chitin oligosaccharides by polyglycosylation of thioglycosides [5]. However, this is

• glucosamine monosaccharide. However, N-acetylglucosamines are linked by α-1,4-glycosidic bonds. Here, we report electrochemical polyglycosylation of thioglycosides to produce protected precursors of chitin oligosaccharides. Results and Discussion Optimization of electrochemical polyglycosylation We initiated

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

Chemical synthesis of C6-tetrazole ᴅ-mannose building blocks and access to a bioisostere of mannuronic acid 1-phosphate

• Eleni Dimitriou and
• Gavin J. Miller

Beilstein J. Org. Chem. 2021, 17, 1527–1532, doi:10.3762/bjoc.17.110

• mannuronic acid building blocks, appropriately modified at the carboxylate C6 position with a bioisosteric tetrazole. Thioglycosides containing a protected C6-tetrazole are accessed from a C6-nitrile, through dipolar cycloaddition using NaN3 with n-Bu2SnO. We also demonstrate access to orthogonally C4

• , biologically relevant 1-phosphate and conjugable, aminopropyl-tethered materials as mimics of mannuronic acid. Evaluation of these C6-tetrazole thioglycosides as donors for non-native alginate fragment synthesis is currently underway and will be reported in due course. a) Chemical structure of alginate showing

Synthesis of multiply fluorinated N-acetyl-D-glucosamine and D-galactosamine analogs via the corresponding deoxyfluorinated glucosazide and galactosazide phenyl thioglycosides

• Vojtěch Hamala,
• Lucie Červenková Šťastná,
• Martin Kurfiřt,
• Petra Cuřínová,
• Martin Dračínský and
• Jindřich Karban

Beilstein J. Org. Chem. 2021, 17, 1086–1095, doi:10.3762/bjoc.17.85

• thioglycosides prepared from deoxyfluorinated 1,6-anhydro-2-azido-β-ᴅ-hexopyranose precursors by ring-opening reaction with phenyl trimethylsilyl sulfide. Nucleophilic deoxyfluorination at C4 and C6 by reaction with DAST, thioglycoside hydrolysis and azide/acetamide transformation completed the synthesis

• . Keywords: amino sugars; deoxyfluorination; fluorinated carbohydrates; hexosamine hemiacetals; thioglycosides; Introduction Fluorinated carbohydrates are versatile carbohydrate mimetics used to probe or manipulate the recognition of carbohydrates by carbohydrate-binding proteins or carbohydrate-processing

• describe the synthesis of a complete series of unprotected GlcNAc and GalNAc analogs systematically deoxyfluorinated at all non-anomeric hydroxy positions. The key synthetic intermediates are multifluorinated glucosazide and galactosazide thioglycosides and hemiacetals, which are also valuable glycosyl

Synthesis of the tetrasaccharide repeating unit of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71^T using linear and one-pot iterative glycosylations

• Arin Gucchait,
• Pradip Shit and
• Anup Kumar Misra

Beilstein J. Org. Chem. 2020, 16, 1700–1705, doi:10.3762/bjoc.16.141

• glycosylation in one pot was developed and is reported herein. Results and Discussion At the beginning, the retrosynthetic analysis suggested that a sequential glycosylation reaction using judiciously protected monosaccharide thioglycosides could be the best strategy for achieving the desired tetrasaccharide 1

Convenient synthesis of the pentasaccharide repeating unit corresponding to the cell wall O-antigen of Escherichia albertii O4

• Tapasi Manna,
• Arin Gucchait and
• Anup Kumar Misra

Beilstein J. Org. Chem. 2020, 16, 106–110, doi:10.3762/bjoc.16.12

• corresponding to the cell wall O-antigen of the Escherichia albertii O4 strain in very good yield with the desired configuration at the glycosidic linkages using thioglycosides and trichloroacetimidate derivatives as glycosyl donors and perchloric acid supported over silica (HClO4/SiO2) as a solid supported

Chemical synthesis of the pentasaccharide repeating unit of the O-specific polysaccharide from Escherichia coli O132 in the form of its 2-aminoethyl glycoside

• Debasish Pal and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2019, 15, 2563–2568, doi:10.3762/bjoc.15.249

• + 2] strategy where the required monosaccharide building blocks are prepared from commercially available sugars through rational protecting group manipulation. The NIS-mediated activation of thioglycosides was used extensively for the glycosylation reactions throughout. Keywords: 2-aminoethyl

Towards the preparation of synthetic outer membrane vesicle models with micromolar affinity to wheat germ agglutinin using a dialkyl thioglycoside

• Dimitri Fayolle,
• Nathalie Berthet,
• Bastien Doumeche,
• Olivier Renaudet,
• Peter Strazewski and
• Michele Fiore

Beilstein J. Org. Chem. 2019, 15, 937–946, doi:10.3762/bjoc.15.90

• , DCM UMR 5250, F-38000 Grenoble, France 10.3762/bjoc.15.90 Abstract A series of alkyl thioglycosides and alkyl thiodiglycosides bearing glucose and N-acetylglucosamine residues were prepared by thiol–ene coupling in moderate to good yields (40–85%). Their binding ability towards wheat germ agglutinin

• Fisher reaction between pyranoses and fatty alcohols of different lengths [8][9]. Alkyl thioglycosides are known for their properties as co-surfactants [10] and present interesting antimicrobial activities [11], acting as glycosidase inhibitors and being resistant towards glycoside hydrolases [12][13

• glycosides cannot be carried out with unprotected thio-glycosides, implying orthogonal protection and deprotection steps in order to obtain unprotected glycolipids. We decided to investigate the formation of artificial OMV composed of long chain alkyl thioglycosides synthesized by the photoinduced radical

Unexpected loss of stereoselectivity in glycosylation reactions during the synthesis of chondroitin sulfate oligosaccharides

• Teresa Mena-Barragán,
• José L. de Paz and
• Pedro M. Nieto

Beilstein J. Org. Chem. 2019, 15, 137–144, doi:10.3762/bjoc.15.14

• obtained by using a postglycosylation–oxidation strategy and thioglycosides as glycosyl donors [22]. Despite all these recent advances in the synthesis of CS oligosaccharides, the classical solution-phase preparation of these molecules is hampered by the required iterative chromatographic purifications

Anomeric modification of carbohydrates using the Mitsunobu reaction

• Julia Hain,
• Patrick Rollin,
• Werner Klaffke and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2018, 14, 1619–1636, doi:10.3762/bjoc.14.138

• appropriate reagents for a Mitsunobu thioglycosylation. However, a competitive redox reaction with the PR3-azodicarboxylate reagent system precludes this application [79][80]. In spite of that, thioglycosides 111–113 could be prepared via a Mitsunobu-type condensation of thioglycosides such as 108 and 109

• [75]. Synthesis of various fructofuranosides according to Mitsunobu and proposed neighbouring group participation [23]. The Mitsunobu reaction allows stereoslective acetalization of dihydroartemisinin [77]. Synthesis of alkyl thioglycosides by Mitsunobu reaction [81]. Preparation of

Glycosylation reactions mediated by hypervalent iodine: application to the synthesis of nucleosides and carbohydrates

• Yuichi Yoshimura,
• Hideaki Wakamatsu,
• Yoshihiro Natori,
• Yukako Saito and
• Noriaki Minakawa

Beilstein J. Org. Chem. 2018, 14, 1595–1618, doi:10.3762/bjoc.14.137

• used for the glycosylation of glycals and thioglycosides to produce disaccharides. In this paper, we review the use of hypervalent iodine-mediated glycosylation reactions for the synthesis of nucleosides and oligosaccharide derivatives. Keywords: glycosylation; hypervalent iodine; Lewis acid

• synthesis employing glycals and thioglycosides as sugar donors. In this review, we survey the synthesis of nucleoside and disaccharide derivatives under oxidative conditions mostly based on the hypervalent iodine-mediated glycosylation reactions. Review Synthesis of 4’-thionucleosides Over the last decade

• constructing oligosaccharides with high stereoselectivities have been reported [18][19]. Thioglycosides are often used as a sugar donor in these reactions due to their stability under various conditions and specific activation with thiophilic agents. For example, one of the typical conditions used for the

Synthetic avenues towards a tetrasaccharide related to Streptococcus pneumonia of serotype 6A

• Aritra Chaudhury,
• Mana Mohan Mukherjee and
• Rina Ghosh

Beilstein J. Org. Chem. 2018, 14, 1095–1102, doi:10.3762/bjoc.14.95

• ]. After this, the Demchenko group improved these early reports with a convergent approach using glycosyl thioimidates as complementary glycosyl donors with respect to thioglycosides [22][23][24][25]. Herein, we wish to report synthetic routes to the SPn 6A tetrasaccharide via stepwise as well as one-pot

AuBr₃-catalyzed azidation of per-O-acetylated and per-O-benzoylated sugars

• Jayashree Rajput,
• Srinivas Hotha and
• Madhuri Vangala

Beilstein J. Org. Chem. 2018, 14, 682–687, doi:10.3762/bjoc.14.56

• -alkynic glycosyl donors, glycosyl halides [18], armed O-methyl glycosides [19], armed and disarmed thioglycosides [20] as well as trichloroacetimidate [21][22] donors were successfully applied to O- and C-glycosylations. Of the gold-catalyzed N-glycosylation reactions, Yu et al. demonstrated the effective

Preactivation-based chemoselective glycosylations: A powerful strategy for oligosaccharide assembly

• Weizhun Yang,
• Bo Yang,
• Sherif Ramadan and
• Xuefei Huang

Beilstein J. Org. Chem. 2017, 13, 2094–2114, doi:10.3762/bjoc.13.207

• the type of glycosyl donors that can undergo a preactivation-based chemoselective glycosylation with an emphasis on thioglycosides due to their wide applicability. Preactivation of glycosyl sulfoxides: early success of preactivation One of the earliest preactivation-based glycosylation reactions

• 59 paved the way for the synthesis of protected heparin pentasaccharide 48 (Scheme 11d). Preactivation-based chemoselective glycosylation of thioglycosides Thioglycosides are one of the most commonly utilized building blocks due to their high stabilities under a wide range of synthetic

• transformations commonly encountered in building block preparation [41]. At the same time, mild promoters are available for thioglycoside activation. The anomeric reactivities of thioglycosides towards glycosylation can be significantly influenced by the protective groups on the glycan ring as well as the size

Intramolecular glycosylation

• Xiao G. Jia and
• Alexei V. Demchenko

Beilstein J. Org. Chem. 2017, 13, 2028–2048, doi:10.3762/bjoc.13.201

• al. explored the use of ortho-dihydroxyboryl-substituted benzyl thioglycosides as a delivery method for the leaving group-based intramolecular glycosylation [129]. They hypothesized that if boronic acid-derived donor 100 is activated in the presence of glycosyl acceptor 101, the boronic ester 102

1,3-Dibromo-5,5-dimethylhydantoin as promoter for glycosylations using thioglycosides

• Fei-Fei Xu,
• Claney L. Pereira and
• Peter H. Seeberger

Beilstein J. Org. Chem. 2017, 13, 1994–1998, doi:10.3762/bjoc.13.195

• GmbH, Magnusstraße 11, 12489 Berlin, Germany 10.3762/bjoc.13.195 Abstract 1,3-Dibromo-5,5-dimethylhydantoin (DBDMH), an inexpensive, non-toxic and stable reagent, is a competent activator of thioglycosides for glycosidic bond formation. Excellent yields were obtained when triflic acid (TfOH) or

• trimethylsilyl trifluoromethanesulfonate (TMSOTf) were employed as co-promoters in solution or automated glycan assembly on solid phase. Keywords: automated glycan assembly; 1,3-dibromo-5,5-dimethylhydantoin; glycosylation; promoter; thioglycosides; Introduction Thioglycosides are versatile glycosylating

• be freshly prepared prior to use [24][25][26]. Here, we describe a promoter system based on the commercially available, inexpensive 1,3-dibromo-5,5-dimethylhydantoin (DBDMH) for the activation of thioglycosides. DBDMH, a white to pale-brown powder that is readily soluble in most organic solvents

Enzymatic synthesis of glycosides: from natural O- and N-glycosides to rare C- and S-glycosides

• Jihen Ati,
• Pierre Lafite and
• Richard Daniellou

Beilstein J. Org. Chem. 2017, 13, 1857–1865, doi:10.3762/bjoc.13.180

• already successfully applied to the biocatalysed synthesis of thiodi- or -trisaccharides [68][69][70][71][72], neo-thioglycoprotein [73], or even simple thioglycosides with potent inhibitory properties [74]. More complex biomolecules were also obtained like glycans or glycopolymers [75], or even rarer

Strategies toward protecting group-free glycosylation through selective activation of the anomeric center

• A. Michael Downey and
• Michal Hocek

Beilstein J. Org. Chem. 2017, 13, 1239–1279, doi:10.3762/bjoc.13.123

• ]. The two most successful saccharide donors to date are 1-fluoroglycosides or oxazoline derivatives (Scheme 2). In addition to the aforementioned enzymes, thioglycoligases and thioglycosynthases have also been developed for the synthesis of thioglycosides as reviewed by Withers et al. [12]. An elegant

• to provide the 1,2-trans β-diastereomer. Only in pathway A, by direct nucleophilic displacement of the β-activated complex, does the minor α-diastereomer form. To demonstrate the potential utility of this methodology in labeling strategies, the Shoda group has also accessed fluorescent thioglycosides

Urea–hydrogen peroxide prompted the selective and controlled oxidation of thioglycosides into sulfoxides and sulfones

• Adesh Kumar Singh,
• Varsha Tiwari,
• Kunj Bihari Mishra,
• Surabhi Gupta and
• Jeyakumar Kandasamy

Beilstein J. Org. Chem. 2017, 13, 1139–1144, doi:10.3762/bjoc.13.113

• thioglycosides to corresponding glycosyl sulfoxides and sulfones is reported using urea–hydrogen peroxide (UHP). A wide range of glycosyl sulfoxides are selectively achieved using 1.5 equiv of UHP at 60 °C while corresponding sulfones are achieved using 2.5 equiv of UHP at 80 °C in acetic acid. Remarkably

• , oxidation susceptible olefin functional groups were found to be stable during the oxidation of sulfide. Keywords: monosaccharides; oxidation; sulfones; sulfoxides; thioglycosides; urea–hydrogen peroxide; Introduction Organosulfur compounds such as sulfides, sulfoxides and sulfones are useful intermediates

• role in carbohydrate synthesis. Thioglycosides, glycosyl sulfoxides and sulfones have been widely used as glycosyl donors in oligosaccharide synthesis which can be activated under mild reaction conditions [5][6][7][8][9][10]. Glycosyl sulfoxide donors usually provide excellent anomeric selectivity

Silyl-protective groups influencing the reactivity and selectivity in glycosylations

• Mikael Bols and
• Christian Marcus Pedersen

Beilstein J. Org. Chem. 2017, 13, 93–105, doi:10.3762/bjoc.13.12

• reactive towards glycosylation with methanol upon activation by NIS, than the acetylated counterpart 12, but the thioglycosides with silyl ethers are even more reactive [20]. Thus the presence of a single O-TBS group (14) can more than double the reactivity while three (15) will increase the rate by 20

• reactivity of the corresponding glycosyl donors. The increased reactivity is very clearly displayed when TBS or TIPS-protected thioglycosyl donors are mixed with benzylated thioglycoside acceptors under activating conditions (Table 1). The benzylated thioglycosides 21 and 26, normally termed ‘armed’ due to

• their comparatively high reactivity, were selectively glycosylated by silylated thioglycosides (20, 23, 25, 28 and 30) in high yield without any self-glycosylation of the armed donors [24][25]. Based on their extraordinary reactivity these silylated donors were termed ‘superarmed’. The listed reactions

O-Alkylated heavy atom carbohydrate probes for protein X-ray crystallography: Studies towards the synthesis of methyl 2-O-methyl-L-selenofucopyranoside

• Roman Sommer,
• Dirk Hauck,
• Annabelle Varrot,
• Anne Imberty,
• Markus Künzler and
• Alexander Titz

Beilstein J. Org. Chem. 2016, 12, 2828–2833, doi:10.3762/bjoc.12.282

• instability in our system was likely resulting both from the more reactive methyl aglycon and the more reactive fucose carbohydrate part, in analogy to the differences in reactivity of related thioglycosides [37]. Next, the free hydroxy group was methylated using methyl iodide to give derivative 6 in 67

TMSBr-mediated solvent- and work-up-free synthesis of α-2-deoxyglycosides from glycals

• Mei-Yuan Hsu,
• Yi-Pei Liu,
• Sarah Lam,
• Su-Ching Lin and
• Cheng-Chung Wang

Beilstein J. Org. Chem. 2016, 12, 1758–1764, doi:10.3762/bjoc.12.164

• functionalities at C6 [10][38][39][40][41][42] have also been developed to improve the stereoselectivity. However, additional required steps involving the introduction and removal of directing groups are reducing the efficiency. Thioglycosides are some of the most commonly used donors for glycosylation reactions

Enabling technologies and green processes in cyclodextrin chemistry

• Giancarlo Cravotto,
• Marina Caporaso,
• Laszlo Jicsinszky and
• Katia Martina

Beilstein J. Org. Chem. 2016, 12, 278–294, doi:10.3762/bjoc.12.30

• described by Patil and Kartha [89], where the preparation of thioglycosides was almost quantitative. Unfortunately, a lack of information on reaction mixture compositions means that the reaction mechanism cannot be completely confirmed because chromatographic purifications and recrystallizations distort the

Synthesis of the pentasaccharide repeating unit of the O-antigen of E. coli O117:K98:H4

• Pintu Kumar Mandal

Beilstein J. Org. Chem. 2014, 10, 2724–2728, doi:10.3762/bjoc.10.287

• been synthesized using a combination of sequential glycosylations and [3 + 2] block synthetic strategy from the suitably protected monosaccharide intermediates. Thioglycosides and glycosyl trichloroacetimidate derivatives have been used as glycosyl donors in the glycosylations. Keywords: Escherichia