Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• Diels–Alder adducts of 1, and similar results on the effect of configuration were observed [21]. During some recent attempts at the chlorination of the π-stacking chiral auxiliary 10a using SOCl2 [9], we observed the migration of O8 resulting in the formation of anomeric chlorides analogous to the

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• reported. The adsorption of PASE has been considered to mainly come from the pyrene fragment, which forms π–π stacking on these graphitic carbon materials [6][7][8]. The sensitivity of the oscillator-based sensor depends on the structure of the linker molecule. Therefore, understanding the adsorption

Synthesis of photo- and ionochromic N-acylated 2-(aminomethylene)benzo[b]thiophene-3(2Н)-ones with a terminal phenanthroline group

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Irina V. Dubonosova,
• Olga Yu. Karlutova,
• Oleg P. Demidov,
• Alexander D. Dubonosov and
• Vladimir A. Bren

Beilstein J. Org. Chem. 2024, 20, 552–560, doi:10.3762/bjoc.20.47

• the phenanthroline unit was also involved in a π–π-stacking interaction (blue plane–green plane in Figure 4), with the plane centroid–plane centroid distance being 3.6998(8) Å (plane shift 1.4919(17) Å, twist and fold angles 1.54° and 1.92°, respectively). Cation-induced transformations of the

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• quenched when the tweezers are closed by the addition of a Zn2+ cation because of intramolecular π–π stacking interactions between the chromophores. The system can be reopened and its luminescence properties restored by introducing tris(2-aminoethyl)amine (TREN), which has a better affinity for Zn2+ and

• square planar conformation giving an almost parallel arrangement of the aryl arms. This creates a cavity able to complex small coordinating guests that interact with the copper as ligands and also with the arms through π–π stacking. This system is selective towards flat aromatic guests and towards

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• intermolecular interactions with an aryl ring in an adjacent molecule. The two aryl rings within the molecule are near-perpendicular to each other and this conformation leads to enhanced, orthogonal π-stacking interactions. We next turned our attention to difluorination of related 2-ketoester substrates

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• ) for π-stacking between the furan and phthalimide rings, before EnT from *IrIII leads to the formation of an excited charge-transfer complex 47. This species would undergo intramolecular electron transfer (IET) giving rise to intermediate 48, which upon fragmentation would form radical 49

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• nitrogen. CH−π stacking and hydrophobic interactions occur between the aromatic ring of Trp36 and the alpha face of the ring as well as the hydroxymethyl moiety of the galactose residue, additionally ensuring specificity for galactoside over glucoside as an equatorial conformation of the O4 hydroxy group

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• devices [1][2][3][4][5][6][7][8]. In this regard, the planar character of most (non-substituted) π-CPCs represents a challenge, as it results in very low solubility in common organic solvents due to favorable intermolecular π–π stacking interactions. This inherently hampers the purification of the target

• conformation of the thiepine ring, thus weakening the π–π stacking intermolecular interactions. Finally, solid-state S-extrusion could be triggered in a controlled way upon thermal activation of 21, as observed in thermogravimetric analysis, with the loss of sulfur detected at 223 °C to yield the planar S

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• reaction with neutral or anionic bases. Keywords: dipyrido[3,2-e:2′,3′-h]acenaphthene (acenaphthylene); hydrogen bonding; π-stacking; substitution reactions; tele-elimination; Introduction Quinoline derivatives, classical nitrogen-containing heterocycles, are widely distributed in nature in various forms

• ), and on the other hand, by π-stacking of the antiparallel protonated dipyridoacenaphthene fragments (two-dimensional dense stacks with an interplanar distance of 3.377 Å). Their combination is the main driving force behind the formation of the final supramolecular zipper structure. Interestingly, the

• value lies in the range of 2.51–2.61 Å, strongly resemble the bifurcated hydrogen bonds so characteristic of base 5, additionally reinforced by π-stacking between the terminal components in each H-associated triad (the shortest distance between the antiparallel π-systems of two molecular planes here is

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• melting point of indigo is bifurcated intra- and intermolecular hydrogen bonding [11], and face-to-face π–π stacking of parallel aromatic rings (Figure 2) [12]. Single crystal X-ray diffraction analysis showed that the indigo molecule is almost planar and exists in the E-conformation. The central C=C bond

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• arising from hydrogen bonding and π–π stacking interactions. In contrast, when 75 is incorporated into a nanocomposite with polystyrene serving as the matrix, luminescent properties are observed [141]. Photoinduced intramolecular energy and electron transfer Exploiting the electron-accepting property of

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• similar to AA [12][13], indicating self-assembly via the hydrophobic effect and π-stacking interactions (Figure 3a,b). The self-assembly in water was further supported by UV–visible analysis, displaying slight red-shifts of the anthracene absorption bands relative to the spectrum in methanol (Δλmax = +3

• below 0.1 mM (Figures S28 and S32, Supporting Information File 1), which is around 10 times lower than that of AA [12][13]. The increased stability against dilution likely arises from reduced electrostatic repulsion and increased anthracene-based π-stacking interactions due to the absence of o-alkoxy

• materials. Conclusion We have developed new pyridinium-based bent amphiphiles PA-R that can be facilely accessed from simple yet novel building block 3,5-dianthrylpyridine in 1–3 steps. The amphiphiles quantitatively self-assembled into ≈2 nm-sized aromatic micelles (PA-R)n via the hydrophobic effect and π

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• -to-face π stacking because the delocalized π electrons move within the stack away from the charge, which induces a macrodipole along the stack that supports the binding of the anion (Figure 1B) [61]. What works for anion–(π)n–π catalysis on π-stacked foldamers [61] and micelles [8] should apply to

Active-metal template clipping synthesis of novel [2]rotaxanes

• Cătălin C. Anghel,
• Teodor A. Cucuiet,
• Niculina D. Hădade and
• Ion Grosu

Beilstein J. Org. Chem. 2023, 19, 1776–1784, doi:10.3762/bjoc.19.130

• ) [30][31], metal-ion template (coordination bonds [22][32], ion-dipol [16], donor–acceptor (charge transfer, π–π stacking) [30][33], and oligoamide macrocycle-hydrogen acceptors (hydrogen bonding) [20][34]. In active-metal template methods (Figure 1) the metal ion acts both as template and catalyst for

Charge carrier transport in perylene-based and pyrene-based columnar liquid crystals

• Alessandro L. Alves,
• Simone V. Bernardino,
• Carlos H. Stadtlober,
• Edivandro Girotto,
• Giliandro Farias,
• Rodney M. do Nascimento,
• Sergio F. Curcio,
• Thiago Cazati,
• Marta E. R. Dotto,
• Juliana Eccher,
• Leonardo N. Furini,
• Hugo Gallardo,
• Harald Bock and
• Ivan H. Bechtold

Beilstein J. Org. Chem. 2023, 19, 1755–1765, doi:10.3762/bjoc.19.128

• molecular π-stacking inside the columns. The pyrene crystallizes bellow 166 °C, preserving the close-packed columnar rectangular structure of the mesophase. Photophysical analysis and numerical calculations assisted the interpretation of positive and negative charge carrier mobilities obtained from fitting

• ) obtained is 23.7 Å for 1 and 22.9 Å for 2. The a/b aspect ratio of the Colrect phase of 2 is equal to 2.08, representing an elongation of around 20% concerning the hexagonal mesophase (where a/b = 1.73). The π-stacking distance between neighboring disks inside the columns, indicated by the (001) peak, is

• -shifted in the film. These results indicate molecular π-stacking aggregation and excimer formation on the films [2]. The PL in film was obtained as a function of temperature (Figure 4). The observed reduction of the PL intensity on heating is expected for organic semiconductors due to self-quenching

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• crystallinity and optical absorption but a shorter π–π stacking distance. OSC devices based on Qx23 and Qx25 achieved the highest PCE (10.67 and 12.19%, respectively) compared to Qx22 and Qx24 (6.94 and 8.01%, respectively) [35]. Xiao and fellows studied the impact of side chains on molecular packing and

• section "Quinoxalines as polymer acceptors" also fabricated OFETs using QxCN-based polymer acceptors and demonstrated unipolar n-type characteristics with moderate OFET mobilities. The well-ordered structures with tight π–π stacking in Qx2 and Qx3 contributed to electron mobilities greater than 1.0 × 10−4

Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on “in-out” structure, and theoretical calculations of non-covalent interactions

• Waldemar Iwanek

Beilstein J. Org. Chem. 2023, 19, 1525–1536, doi:10.3762/bjoc.19.109

• the amine nitrogen of the guest molecule. In addition to hydrogen bonding, other interactions such as π–π stacking and electrostatic interactions also play a role in the complexation process. These interactions can be modulated by changing the pH, solvent, and temperature of the solution. The binding

Organic thermally activated delayed fluorescence material with strained benzoguanidine donor

• Alexander C. Brannan,
• Elvie F. P. Beaumont,
• Nguyen Le Phuoc,
• George F. S. Whitehead,
• Mikko Linnolahti and
• Alexander S. Romanov

Beilstein J. Org. Chem. 2023, 19, 1289–1298, doi:10.3762/bjoc.19.95

• revealed that 4BGIPN molecules experience face to face intermolecular π–π stacking interactions between the benzoguanidine moieties similar to 4CzIPN (reported by Etherington et al., [12]). The average interplanar distance for close neighbor benzoguanidine moieties in 4BGIPN is 3.322(3) Å, which is

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

• could act as an electron shuttle (potentially via a π-stacking assembly). The synthetic scope was extended to C(sp2)–P bond formations by trapping with phosphines or phosphites (Figure 12B), and in all these cases DIPEA was used as the electron donor (0.5–5 equiv). Arylphosphonium chlorides 20 that are

Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• -Friedel–Crafts reaction between indole 4 and α-iminophosphonate 35. The reaction functionalized the C3 position of the heterocyclic ring with an α-aminophosphonate group. Chiral phosphoric acid P12 was the stereoselectivity inducer in the products 36 as explained by π–π stacking and H-bonding interactions

• resonance-assisted accumulation of negative charge on C6 enabled the carbon to add to the electrophile selectively from the Re face of the imine plane because of substrate–catalyst H-bonding interactions (see transition state 51). Beside multiple noncovalent interactions, π–π stacking between the

• substitutents. Excellent dia- and enantioselective synthesis of the products were caused by a chiral environment induced in the transition state through a dual H-bonding interaction between both the substrates and catalyst. In addition, π–π stacking between the aromatic moieties in both reagents brought more

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• stability of the (S)- and (R)-diastereomers which is related to the conformational flexibility of the template. The rigidity of the chiral Ni–Schiff base complexes is mainly determined by the noncovalent interactions in the Ni coordination environment. Among them, the most important is the π-stacking

• between the o-phenylene fragment and the benzyl moiety in the proline. The stronger the π-stacking interactions are, the more rigid are the complexes and the higher is the difference in the relative energies of the amino acid derivatives with different configuration of the α-stereocenter. As it has been

• are presented in different colors: the hydrogen bonding are labeled in blue color of the reduced density gradient isosurface; green color corresponds to the dispersion interactions (van der Waals interactions, the π-stacking); red color represents steric clashes. The interplay of these through-space

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• modelling combined with spectrophotometric experiments revealed that in neutral and acidic buffered water solutions conjugates predominantly exist in intramolecularly stacked conformations because of the π–π stacking interaction between pyrene and phenanthridine moieties. The investigated systems exhibited

• + and Phen-Py-2+, where π–π stacking contacts are further promoted by the favorable cation–π interactions. Phenanthridine–pyrene conjugate Phen-Py-1 showed excimer fluorescence that was red shifted compared to the emission of a single phenanthridine or pyrene chromophore. This excimer fluorescence was

Asymmetric synthesis of a stereopentade fragment toward latrunculins

• Benjamin Joyeux,
• Antoine Gamet,
• Nicolas Casaretto and
• Bastien Nay

Beilstein J. Org. Chem. 2023, 19, 428–433, doi:10.3762/bjoc.19.32

• %). This compound results from the transposition of the para-nitrobenzoyl (PNBz) group onto the 13-OH, which could be favoured by the steric hindrance of C-15 and a possible π–π stacking with the OPMB group. These PNBz esters were readily hydrolyzed to furnished diol 24 in 97% yield. The oxydation of the

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• other related molecules. Based on the collected data, the porphyrin complex 160 was found to show J-type aggregation in both polar and nonpolar solvents. In polar solvents, aggregation was induced by van der Waals interactions between H-cardanol moieties, while π–π stacking interactions between

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• electrocatalytic efficiency (TON up to 2000) was achieved using the TEMPO derivative non-covalently immobilized on the surface of a carbon cloth anode due to the π–π stacking interaction between the pyrene fragment of the catalyst and the electrode surface [103] (Scheme 15). However, this method is not compatible

• electrochemical oxidation of primary alcohols and aldehydes to carboxylic acids. Electrocatalytic oxidation of benzylic alcohols by a TEMPO derivative immobilized on a graphite anode by π–π stacking interactions. Electrochemical oxidation of carbamates of cyclic amines to lactams and oxidative cyanation of amines