2025-07-24 16:57:43,690 | afspm.utils.parser | DEBUG:100 | Expanding pbc_scan_logic into {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding cache_kwargs into {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding xop_url into tcp://127.0.0.1:5555.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_origin into [0, 0].
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_size into [5, 5].
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding our_phys_units into um.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_res into [128, 128].
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:57:43,691 | afspm.utils.parser | DEBUG:100 | Expanding exp_data into {'class': 'experiment.ExperimentData', 'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding psc into {'class': 'afspm.io.pubsub.cache.PubSubCache', 'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding router into {'class': 'afspm.io.control.router.ControlRouter', 'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding rescan_pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding channel_id into HeightRetrace.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding rescan_sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding xopclient into {'class': 'afspm.components.microscope.translators.asylum.client.XopClient', 'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9000'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding server into {'class': 'afspm.io.control.server.ControlServer', 'url': 'tcp://127.0.0.1:6666'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:43,693 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:43,693 | afspm.components.monitor | DEBUG:98 | Initializing components monitor.
2025-07-24 16:57:43,694 | afspm.components.monitor | INFO:241 | Starting main loop for components monitor.
2025-07-24 16:57:43,694 | afspm.components.monitor | INFO:156 | Creating process for component scheduler
2025-07-24 16:57:43,862 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.drift.scheduler.CSCorrectedScheduler
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.drift.scheduler.CSCorrectedScheduler'>
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.cache.PubSubCache
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.cache.PubSubCache'>
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9001
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9000
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.logic.pbc_logic.PBCScanLogic
2025-07-24 16:57:45,507 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic'>
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.control.router.ControlRouter
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.control.router.ControlRouter'>
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:6666
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:6667
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.publisher.Publisher
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.publisher.Publisher'>
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9005
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value HeightRetrace
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:254 | Evaluating value scheduler
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic'> with kwargs: {'default_scan_history': 5}
2025-07-24 16:57:45,508 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.cache.PubSubCache'> with kwargs: {'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': <afspm.io.pubsub.logic.pbc_logic.PBCScanLogic object at 0x000001AF7303DAD0>}}
2025-07-24 16:57:45,764 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.control.router.ControlRouter'> with kwargs: {'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}
2025-07-24 16:57:46,018 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.publisher.Publisher'> with kwargs: {'url': 'tcp://127.0.0.1:9005'}
2025-07-24 16:57:46,276 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.drift.scheduler.CSCorrectedScheduler'> with kwargs: {'pubsubcache': <afspm.io.pubsub.cache.PubSubCache object at 0x000001AF7053C7D0>, 'router': <afspm.io.control.router.ControlRouter object at 0x000001AF73237390>, 'publisher': <afspm.io.pubsub.publisher.Publisher object at 0x000001AF73004210>, 'channel_id': 'HeightRetrace', 'name': 'scheduler', 'ctx': None}
2025-07-24 16:57:46,451 | afspm.components.component | DEBUG:100 | Initializing component scheduler
2025-07-24 16:57:46,703 | afspm.utils.csv | DEBUG:61 | Creating initial csv file, with header.
2025-07-24 16:57:46,703 | afspm.components.component | INFO:131 | Starting main loop for component scheduler
2025-07-24 16:57:46,827 | afspm.components.microscope.scheduler | DEBUG:97 | Sending new control state: control_mode: CM_AUTOMATED

2025-07-24 16:57:46,827 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ControlState
2025-07-24 16:57:46,829 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ControlState
2025-07-24 16:57:50,477 | afspm.components.monitor | INFO:203 | Creating listener for component scheduler
2025-07-24 16:57:50,729 | afspm.components.monitor | DEBUG:230 | Received heartbeat for component scheduler, continuing.
2025-07-24 16:57:52,052 | afspm.utils.parser | DEBUG:100 | Expanding pbc_scan_logic into {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding cache_kwargs into {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:57:52,053 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding xop_url into tcp://127.0.0.1:5555.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_origin into [0, 0].
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_size into [5, 5].
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding our_phys_units into um.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_res into [128, 128].
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding exp_data into {'class': 'experiment.ExperimentData', 'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding psc into {'class': 'afspm.io.pubsub.cache.PubSubCache', 'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding router into {'class': 'afspm.io.control.router.ControlRouter', 'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:57:52,054 | afspm.utils.parser | DEBUG:100 | Expanding rescan_pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding channel_id into HeightRetrace.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding rescan_sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding xopclient into {'class': 'afspm.components.microscope.translators.asylum.client.XopClient', 'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9000'}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding server into {'class': 'afspm.io.control.server.ControlServer', 'url': 'tcp://127.0.0.1:6666'}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:52,055 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:57:52,055 | afspm.components.monitor | DEBUG:98 | Initializing components monitor.
2025-07-24 16:57:52,056 | afspm.components.monitor | INFO:241 | Starting main loop for components monitor.
2025-07-24 16:57:52,056 | afspm.components.monitor | INFO:156 | Creating process for component translator
2025-07-24 16:57:52,229 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.translator.AsylumTranslator
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.microscope.translators.asylum.translator.AsylumTranslator'>
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.client.XopClient
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.microscope.translators.asylum.client.XopClient'>
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:5555
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.publisher.Publisher
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.publisher.Publisher'>
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9000
2025-07-24 16:57:54,002 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.control.server.ControlServer
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.control.server.ControlServer'>
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:6666
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.subscriber.Subscriber
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.subscriber.Subscriber'>
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9001
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:254 | Evaluating value translator
2025-07-24 16:57:54,004 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.microscope.translators.asylum.client.XopClient'> with kwargs: {'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}
2025-07-24 16:57:54,007 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.publisher.Publisher'> with kwargs: {'url': 'tcp://127.0.0.1:9000'}
2025-07-24 16:57:54,263 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.control.server.ControlServer'> with kwargs: {'url': 'tcp://127.0.0.1:6666'}
2025-07-24 16:57:54,517 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.subscriber.Subscriber'> with kwargs: {'sub_url': 'tcp://127.0.0.1:9001'}
2025-07-24 16:57:54,550 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01']
2025-07-24 16:57:54,550 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to ALL
2025-07-24 16:57:54,550 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ControlState being sent out.
2025-07-24 16:57:54,725 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01KILL']
2025-07-24 16:57:54,725 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to KILL
2025-07-24 16:57:54,770 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.microscope.translators.asylum.translator.AsylumTranslator'> with kwargs: {'xop_client': <afspm.components.microscope.translators.asylum.client.XopClient object at 0x00000260DCACB2D0>, 'publisher': <afspm.io.pubsub.publisher.Publisher object at 0x000002609630C050>, 'control_server': <afspm.io.control.server.ControlServer object at 0x00000260965332D0>, 'subscriber': <afspm.io.pubsub.subscriber.Subscriber object at 0x0000026096519010>, 'name': 'translator', 'ctx': None}
2025-07-24 16:57:54,771 | afspm.components.microscope.params | DEBUG:374 | Custom setter/getter provided for parameter scan-size-x. Using.
2025-07-24 16:57:54,772 | afspm.components.microscope.params | DEBUG:374 | Custom setter/getter provided for parameter scan-size-y. Using.
2025-07-24 16:57:54,773 | afspm.components.microscope.params | DEBUG:374 | Custom setter/getter provided for parameter probe-pos-x. Using.
2025-07-24 16:57:54,773 | afspm.components.microscope.params | DEBUG:374 | Custom setter/getter provided for parameter probe-pos-y. Using.
2025-07-24 16:57:54,774 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.actions.request_action
2025-07-24 16:57:54,774 | afspm.utils.parser | DEBUG:380 | Imported class/method <function request_action at 0x000002609678C720>
2025-07-24 16:57:54,775 | afspm.utils.parser | DEBUG:254 | Evaluating value DoScanFunc
2025-07-24 16:57:54,775 | afspm.utils.parser | DEBUG:276 | Evaluating value DoScan
2025-07-24 16:57:54,775 | afspm.utils.parser | DEBUG:254 | Evaluating value PASS_KWARGS
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.actions.request_action
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:380 | Imported class/method <function request_action at 0x000002609678C720>
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:254 | Evaluating value DoScanFunc
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:276 | Evaluating value StopScan
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:254 | Evaluating value PASS_KWARGS
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.actions.request_action
2025-07-24 16:57:54,776 | afspm.utils.parser | DEBUG:380 | Imported class/method <function request_action at 0x000002609678C720>
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:254 | Evaluating value DoForceFunc
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:276 | Evaluating value Single
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:254 | Evaluating value PASS_KWARGS
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.actions.request_action
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:380 | Imported class/method <function request_action at 0x000002609678C720>
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:254 | Evaluating value DoForceFunc
2025-07-24 16:57:54,777 | afspm.utils.parser | DEBUG:276 | Evaluating value Reset
2025-07-24 16:57:54,779 | afspm.utils.parser | DEBUG:254 | Evaluating value PASS_KWARGS
2025-07-24 16:57:54,779 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.microscope.translators.asylum.actions.request_action
2025-07-24 16:57:54,779 | afspm.utils.parser | DEBUG:380 | Imported class/method <function request_action at 0x000002609678C720>
2025-07-24 16:57:54,779 | afspm.utils.parser | DEBUG:254 | Evaluating value DoForceFunc
2025-07-24 16:57:54,779 | afspm.utils.parser | DEBUG:276 | Evaluating value Go
2025-07-24 16:57:54,779 | afspm.utils.parser | DEBUG:254 | Evaluating value PASS_KWARGS
2025-07-24 16:57:54,779 | afspm.components.component | DEBUG:100 | Initializing component translator
2025-07-24 16:57:55,181 | afspm.components.component | INFO:131 | Starting main loop for component translator
2025-07-24 16:57:55,182 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ControlState
2025-07-24 16:57:55,554 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 16:57:55,554 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 16:57:55,598 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 16:57:55,648 | afspm.components.microscope.translator | INFO:491 | New zctrl_params, sending out.
2025-07-24 16:57:55,649 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ZCtrlParameters
2025-07-24 16:57:55,768 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ZCtrlParameters
2025-07-24 16:57:55,773 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 16:57:55,774 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 16:57:55,774 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 16:57:55,775 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 16:57:55,876 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 16:57:55,877 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ZCtrlParameters
2025-07-24 16:57:55,941 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 16:57:56,112 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:57:56,113 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:57:56,560 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 16:57:56,561 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:57:58,854 | afspm.components.monitor | INFO:203 | Creating listener for component translator
2025-07-24 16:58:02,502 | afspm.components.monitor | DEBUG:230 | Received heartbeat for component translator, continuing.
2025-07-24 16:58:07,446 | afspm.utils.parser | DEBUG:100 | Expanding pbc_scan_logic into {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}.
2025-07-24 16:58:07,446 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding cache_kwargs into {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding xop_url into tcp://127.0.0.1:5555.
2025-07-24 16:58:07,447 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_origin into [0, 0].
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_size into [5, 5].
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding our_phys_units into um.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_res into [128, 128].
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding exp_data into {'class': 'experiment.ExperimentData', 'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding psc into {'class': 'afspm.io.pubsub.cache.PubSubCache', 'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding router into {'class': 'afspm.io.control.router.ControlRouter', 'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding rescan_pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding channel_id into HeightRetrace.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding rescan_sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding xopclient into {'class': 'afspm.components.microscope.translators.asylum.client.XopClient', 'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9000'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding server into {'class': 'afspm.io.control.server.ControlServer', 'url': 'tcp://127.0.0.1:6666'}.
2025-07-24 16:58:07,448 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:07,449 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:07,449 | afspm.components.monitor | DEBUG:98 | Initializing components monitor.
2025-07-24 16:58:07,449 | afspm.components.monitor | INFO:241 | Starting main loop for components monitor.
2025-07-24 16:58:07,449 | afspm.components.monitor | INFO:156 | Creating process for component ui
2025-07-24 16:58:07,615 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.control_ui.AfspmControlUI
2025-07-24 16:58:07,622 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.control_ui.AfspmControlUI'>
2025-07-24 16:58:07,622 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.subscriber.Subscriber
2025-07-24 16:58:07,622 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.subscriber.Subscriber'>
2025-07-24 16:58:07,622 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9001
2025-07-24 16:58:07,622 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.control.client.AdminControlClient
2025-07-24 16:58:07,622 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.control.client.AdminControlClient'>
2025-07-24 16:58:07,623 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:6667
2025-07-24 16:58:07,623 | afspm.utils.parser | DEBUG:254 | Evaluating value ui
2025-07-24 16:58:07,623 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.subscriber.Subscriber'> with kwargs: {'sub_url': 'tcp://127.0.0.1:9001'}
2025-07-24 16:58:07,701 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01']
2025-07-24 16:58:07,701 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to ALL
2025-07-24 16:58:07,701 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ControlState being sent out.
2025-07-24 16:58:07,702 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ScanParameters2d being sent out.
2025-07-24 16:58:07,702 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ZCtrlParameters being sent out.
2025-07-24 16:58:07,703 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ProbePosition being sent out.
2025-07-24 16:58:07,703 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ScopeStateMsg being sent out.
2025-07-24 16:58:07,774 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ControlState
2025-07-24 16:58:07,774 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 16:58:07,774 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ZCtrlParameters
2025-07-24 16:58:07,775 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 16:58:07,775 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:58:07,874 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01KILL']
2025-07-24 16:58:07,874 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to KILL
2025-07-24 16:58:07,876 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.control.client.AdminControlClient'> with kwargs: {'url': 'tcp://127.0.0.1:6667'}
2025-07-24 16:58:07,961 | afspm.components.monitor | INFO:203 | Creating listener for component ui
2025-07-24 16:58:08,129 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.control_ui.AfspmControlUI'> with kwargs: {'subscriber': <afspm.io.pubsub.subscriber.Subscriber object at 0x000001EEFFAC3E90>, 'control_client': <afspm.io.control.client.AdminControlClient object at 0x000001EEFFACCD90>, 'name': 'ui', 'ctx': None}
2025-07-24 16:58:08,160 | afspm.components.component | DEBUG:100 | Initializing component ui
2025-07-24 16:58:08,412 | afspm.components.monitor | DEBUG:230 | Received heartbeat for component ui, continuing.
2025-07-24 16:58:08,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ControlState
2025-07-24 16:58:08,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 16:58:08,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ZCtrlParameters
2025-07-24 16:58:08,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 16:58:08,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 16:58:16,155 | afspm.utils.parser | DEBUG:100 | Expanding pbc_scan_logic into {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}.
2025-07-24 16:58:16,155 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:16,155 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding cache_kwargs into {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding xop_url into tcp://127.0.0.1:5555.
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_origin into [0, 0].
2025-07-24 16:58:16,156 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_size into [5, 5].
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding our_phys_units into um.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_res into [128, 128].
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding exp_data into {'class': 'experiment.ExperimentData', 'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding psc into {'class': 'afspm.io.pubsub.cache.PubSubCache', 'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding router into {'class': 'afspm.io.control.router.ControlRouter', 'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding rescan_pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding channel_id into HeightRetrace.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding rescan_sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding xopclient into {'class': 'afspm.components.microscope.translators.asylum.client.XopClient', 'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9000'}.
2025-07-24 16:58:16,157 | afspm.utils.parser | DEBUG:100 | Expanding server into {'class': 'afspm.io.control.server.ControlServer', 'url': 'tcp://127.0.0.1:6666'}.
2025-07-24 16:58:16,158 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:16,158 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:16,158 | afspm.components.monitor | DEBUG:98 | Initializing components monitor.
2025-07-24 16:58:16,159 | afspm.components.monitor | INFO:241 | Starting main loop for components monitor.
2025-07-24 16:58:16,159 | afspm.components.monitor | INFO:156 | Creating process for component metadata
2025-07-24 16:58:16,327 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.scan.metadata.ScanMetadataWriter
2025-07-24 16:58:16,329 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.scan.metadata.ScanMetadataWriter'>
2025-07-24 16:58:16,329 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.subscriber.Subscriber
2025-07-24 16:58:16,329 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.subscriber.Subscriber'>
2025-07-24 16:58:16,329 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9001
2025-07-24 16:58:16,329 | afspm.utils.parser | DEBUG:254 | Evaluating value metadata
2025-07-24 16:58:16,329 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.subscriber.Subscriber'> with kwargs: {'sub_url': 'tcp://127.0.0.1:9001'}
2025-07-24 16:58:16,400 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01']
2025-07-24 16:58:16,400 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to ALL
2025-07-24 16:58:16,400 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ControlState being sent out.
2025-07-24 16:58:16,400 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ScanParameters2d being sent out.
2025-07-24 16:58:16,400 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ZCtrlParameters being sent out.
2025-07-24 16:58:16,401 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ProbePosition being sent out.
2025-07-24 16:58:16,401 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ControlState
2025-07-24 16:58:16,401 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ScopeStateMsg being sent out.
2025-07-24 16:58:16,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 16:58:16,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ZCtrlParameters
2025-07-24 16:58:16,515 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 16:58:16,515 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 16:58:16,577 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01KILL']
2025-07-24 16:58:16,577 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to KILL
2025-07-24 16:58:16,582 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.scan.metadata.ScanMetadataWriter'> with kwargs: {'subscriber': <afspm.io.pubsub.subscriber.Subscriber object at 0x0000021D5E1F8390>, 'name': 'metadata', 'ctx': None}
2025-07-24 16:58:16,582 | afspm.utils.csv | DEBUG:61 | Creating initial csv file, with header.
2025-07-24 16:58:16,582 | afspm.components.component | DEBUG:100 | Initializing component metadata
2025-07-24 16:58:16,667 | afspm.components.monitor | INFO:203 | Creating listener for component metadata
2025-07-24 16:58:16,725 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ControlState
2025-07-24 16:58:16,726 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 16:58:16,726 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ZCtrlParameters
2025-07-24 16:58:16,727 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 16:58:16,727 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:58:16,834 | afspm.components.component | INFO:131 | Starting main loop for component metadata
2025-07-24 16:58:16,835 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ControlState
2025-07-24 16:58:16,835 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 16:58:16,837 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ZCtrlParameters
2025-07-24 16:58:16,837 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 16:58:16,837 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 16:58:16,923 | afspm.components.monitor | DEBUG:230 | Received heartbeat for component metadata, continuing.
2025-07-24 16:58:29,361 | afspm.utils.parser | DEBUG:100 | Expanding pbc_scan_logic into {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}.
2025-07-24 16:58:29,361 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding cache_kwargs into {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding xop_url into tcp://127.0.0.1:5555.
2025-07-24 16:58:29,362 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_origin into [0, 0].
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_size into [5, 5].
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding our_phys_units into um.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_res into [128, 128].
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding exp_data into {'class': 'experiment.ExperimentData', 'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding psc into {'class': 'afspm.io.pubsub.cache.PubSubCache', 'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding router into {'class': 'afspm.io.control.router.ControlRouter', 'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding rescan_pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding channel_id into HeightRetrace.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding rescan_sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding xopclient into {'class': 'afspm.components.microscope.translators.asylum.client.XopClient', 'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}.
2025-07-24 16:58:29,363 | afspm.utils.parser | DEBUG:100 | Expanding pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9000'}.
2025-07-24 16:58:29,364 | afspm.utils.parser | DEBUG:100 | Expanding server into {'class': 'afspm.io.control.server.ControlServer', 'url': 'tcp://127.0.0.1:6666'}.
2025-07-24 16:58:29,364 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:29,364 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:29,364 | afspm.components.monitor | DEBUG:98 | Initializing components monitor.
2025-07-24 16:58:29,364 | afspm.components.monitor | INFO:241 | Starting main loop for components monitor.
2025-07-24 16:58:29,364 | afspm.components.monitor | INFO:156 | Creating process for component rescanner
2025-07-24 16:58:29,529 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.drift.rescanner.DriftRescanner
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.drift.rescanner.DriftRescanner'>
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.subscriber.Subscriber
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.subscriber.Subscriber'>
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9005
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.control.client.ControlClient
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.control.client.ControlClient'>
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:6667
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:254 | Evaluating value rescanner
2025-07-24 16:58:29,531 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.subscriber.Subscriber'> with kwargs: {'sub_url': 'tcp://127.0.0.1:9005'}
2025-07-24 16:58:29,784 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.control.client.ControlClient'> with kwargs: {'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}
2025-07-24 16:58:29,872 | afspm.components.monitor | INFO:203 | Creating listener for component rescanner
2025-07-24 16:58:30,036 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.drift.rescanner.DriftRescanner'> with kwargs: {'rerun_wait_s': 60, 'subscriber': <afspm.io.pubsub.subscriber.Subscriber object at 0x000001FFBBD90550>, 'control_client': <afspm.io.control.client.ControlClient object at 0x000001FF8B745510>, 'name': 'rescanner', 'ctx': None}
2025-07-24 16:58:30,037 | afspm.components.component | DEBUG:100 | Initializing component rescanner
2025-07-24 16:58:30,291 | afspm.components.monitor | DEBUG:230 | Received heartbeat for component rescanner, continuing.
2025-07-24 16:58:30,293 | afspm.components.component | INFO:131 | Starting main loop for component rescanner
2025-07-24 16:58:36,141 | afspm.utils.parser | DEBUG:100 | Expanding pbc_scan_logic into {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}.
2025-07-24 16:58:36,141 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:36,141 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding pub_url into tcp://127.0.0.1:9000.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding cache_kwargs into {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding psc_url into tcp://127.0.0.1:9001.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding rescan_url into tcp://127.0.0.1:9005.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding server_url into tcp://127.0.0.1:6666.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding request_timeout_ms into 5000.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding router_url into tcp://127.0.0.1:6667.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding xop_url into tcp://127.0.0.1:5555.
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_origin into [0, 0].
2025-07-24 16:58:36,142 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_size into [5, 5].
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding our_phys_units into um.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding full_scan_res into [128, 128].
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding exp_data into {'class': 'experiment.ExperimentData', 'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding ui_client into {'class': 'afspm.io.control.client.AdminControlClient', 'url': 'tcp://127.0.0.1:6667'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding psc into {'class': 'afspm.io.pubsub.cache.PubSubCache', 'url': 'tcp://127.0.0.1:9001', 'sub_url': 'tcp://127.0.0.1:9000', 'update_cache_kwargs': {'cache_logic': {'class': 'afspm.io.pubsub.logic.pbc_logic.PBCScanLogic', 'default_scan_history': 5}}}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding router into {'class': 'afspm.io.control.router.ControlRouter', 'server_url': 'tcp://127.0.0.1:6666', 'router_url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding rescan_pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding channel_id into HeightRetrace.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding rescan_sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9005'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding client into {'class': 'afspm.io.control.client.ControlClient', 'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding xopclient into {'class': 'afspm.components.microscope.translators.asylum.client.XopClient', 'url': 'tcp://127.0.0.1:5555', 'timeout_s': 20}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding pub into {'class': 'afspm.io.pubsub.publisher.Publisher', 'url': 'tcp://127.0.0.1:9000'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding server into {'class': 'afspm.io.control.server.ControlServer', 'url': 'tcp://127.0.0.1:6666'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:36,143 | afspm.utils.parser | DEBUG:100 | Expanding sub into {'class': 'afspm.io.pubsub.subscriber.Subscriber', 'sub_url': 'tcp://127.0.0.1:9001'}.
2025-07-24 16:58:36,144 | afspm.components.monitor | DEBUG:98 | Initializing components monitor.
2025-07-24 16:58:36,144 | afspm.components.monitor | INFO:241 | Starting main loop for components monitor.
2025-07-24 16:58:36,144 | afspm.components.monitor | INFO:156 | Creating process for component experiment
2025-07-24 16:58:36,315 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.components.scan.handler.ScanningComponent
2025-07-24 16:58:36,315 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.components.scan.handler.ScanningComponent'>
2025-07-24 16:58:36,315 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.pubsub.subscriber.Subscriber
2025-07-24 16:58:36,316 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.pubsub.subscriber.Subscriber'>
2025-07-24 16:58:36,316 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:9001
2025-07-24 16:58:36,316 | afspm.utils.parser | DEBUG:254 | Evaluating value afspm.io.control.client.ControlClient
2025-07-24 16:58:36,316 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'afspm.io.control.client.ControlClient'>
2025-07-24 16:58:36,316 | afspm.utils.parser | DEBUG:254 | Evaluating value tcp://127.0.0.1:6667
2025-07-24 16:58:36,316 | afspm.utils.parser | DEBUG:254 | Evaluating value experiment.get_next_scan_params
2025-07-24 16:58:36,317 | afspm.utils.parser | DEBUG:380 | Imported class/method <function get_next_scan_params at 0x00000225ED37A7A0>
2025-07-24 16:58:36,317 | afspm.utils.parser | DEBUG:254 | Evaluating value experiment.ExperimentData
2025-07-24 16:58:36,317 | afspm.utils.parser | DEBUG:380 | Imported class/method <class 'experiment.ExperimentData'>
2025-07-24 16:58:36,317 | afspm.utils.parser | DEBUG:254 | Evaluating value um
2025-07-24 16:58:36,317 | afspm.utils.parser | DEBUG:254 | Evaluating value experiment
2025-07-24 16:58:36,317 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.pubsub.subscriber.Subscriber'> with kwargs: {'sub_url': 'tcp://127.0.0.1:9001'}
2025-07-24 16:58:36,363 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01']
2025-07-24 16:58:36,363 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to ALL
2025-07-24 16:58:36,363 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ControlState being sent out.
2025-07-24 16:58:36,364 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ScanParameters2d being sent out.
2025-07-24 16:58:36,364 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ControlState
2025-07-24 16:58:36,364 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ControlState
2025-07-24 16:58:36,364 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ZCtrlParameters being sent out.
2025-07-24 16:58:36,364 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ProbePosition being sent out.
2025-07-24 16:58:36,364 | afspm.io.pubsub.cache | INFO:226 | scheduler: Subscription: cache for ScopeStateMsg being sent out.
2025-07-24 16:58:36,415 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ControlState
2025-07-24 16:58:36,416 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 16:58:36,416 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ZCtrlParameters
2025-07-24 16:58:36,416 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 16:58:36,416 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 16:58:36,465 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 16:58:36,465 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ZCtrlParameters
2025-07-24 16:58:36,465 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 16:58:36,465 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 16:58:36,540 | afspm.io.pubsub.cache | DEBUG:174 | scheduler: backend_events: [b'\x01KILL']
2025-07-24 16:58:36,540 | afspm.io.pubsub.cache | INFO:214 | scheduler: New subscription to KILL
2025-07-24 16:58:36,570 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.io.control.client.ControlClient'> with kwargs: {'url': 'tcp://127.0.0.1:6667', 'request_timeout_ms': 5000}
2025-07-24 16:58:36,651 | afspm.components.monitor | INFO:203 | Creating listener for component experiment
2025-07-24 16:58:36,823 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'experiment.ExperimentData'> with kwargs: {'scan_origin': [0, 0], 'scan_size': [5, 5], 'length_units': 'um', 'scan_res': [128, 128], 'scan_wait_s': 900}
2025-07-24 16:58:36,824 | afspm.utils.parser | DEBUG:315 | Instantiating <class 'afspm.components.scan.handler.ScanningComponent'> with kwargs: {'subscriber': <afspm.io.pubsub.subscriber.Subscriber object at 0x00000225EC8753D0>, 'control_client': <afspm.io.control.client.ControlClient object at 0x00000225EC86F090>, 'rerun_wait_s': 60, 'get_next_params': <function get_next_scan_params at 0x00000225ED37A7A0>, 'next_params_kwargs': {'exp_data': ExperimentData(scan_origin=[0, 0], scan_size=[5, 5], length_units='um', scan_res=[128, 128], scan_wait_s=900, angular_units='degrees', scan_sleep_ts=None)}, 'name': 'experiment', 'ctx': None}
2025-07-24 16:58:36,824 | afspm.components.component | DEBUG:100 | Initializing component experiment
2025-07-24 16:58:37,064 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 16:58:37,064 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ZCtrlParameters
2025-07-24 16:58:37,066 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 16:58:37,067 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:58:37,080 | afspm.components.monitor | DEBUG:230 | Received heartbeat for component experiment, continuing.
2025-07-24 16:58:37,082 | afspm.components.component | INFO:131 | Starting main loop for component experiment
2025-07-24 16:58:37,083 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ControlState
2025-07-24 16:58:37,083 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 16:58:37,084 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ZCtrlParameters
2025-07-24 16:58:37,084 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 16:58:37,085 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 16:58:37,085 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 16:58:37,085 | afspm.components.scan.handler | INFO:195 | experiment: First startup, sending first scan params.
2025-07-24 16:58:37,085 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 16:58:37,086 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 16:58:37,086 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 16:58:37,259 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 16:58:37,260 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_NOT_IN_CONTROL, None
2025-07-24 16:58:37,260 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_NOT_IN_CONTROL, None
2025-07-24 16:58:37,262 | afspm.io.control.client | INFO:430 | Request failed due to not being in control. Requesting control.
2025-07-24 16:58:37,262 | afspm.io.control.client | DEBUG:294 | Sending request_ctrl with problem: EP_NONE
2025-07-24 16:58:37,428 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_REQUEST_CTRL, 0
2025-07-24 16:58:37,428 | afspm.io.control.router | INFO:152 | scheduler: experiment gaining control
2025-07-24 16:58:37,430 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 16:58:37,431 | afspm.components.microscope.scheduler | DEBUG:97 | Sending new control state: control_mode: CM_AUTOMATED
client_in_control_id: "experiment"

2025-07-24 16:58:37,431 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 16:58:37,431 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ControlState
2025-07-24 16:58:37,432 | afspm.io.control.client | INFO:434 | Control received, retrying request.
2025-07-24 16:58:37,432 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ControlState
2025-07-24 16:58:37,432 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 16:58:37,433 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ControlState
2025-07-24 16:58:37,433 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ControlState
2025-07-24 16:58:37,529 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ControlState
2025-07-24 16:58:37,599 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 16:58:37,600 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 16:58:37,749 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ControlState
2025-07-24 16:58:37,750 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 16:58:38,020 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 16:58:38,021 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 16:58:38,021 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 16:58:38,022 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 16:58:38,024 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 16:58:38,125 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ControlState
2025-07-24 16:58:38,129 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:58:38,129 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:58:38,134 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 16:58:38,135 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 16:58:38,135 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 16:58:38,213 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 16:58:38,222 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 16:58:38,227 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 16:58:38,227 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 16:58:38,548 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 16:58:38,548 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 16:58:38,549 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:58:38,549 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:58:38,550 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 16:58:38,555 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 16:58:38,556 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 16:58:38,556 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 16:58:38,556 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 16:58:38,632 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 16:58:38,647 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 16:58:38,647 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 16:58:38,647 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 16:58:38,647 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 16:58:38,647 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 16:58:38,649 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:58:38,649 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:58:38,782 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 16:58:38,783 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 16:58:39,387 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 16:58:40,353 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 16:58:40,354 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 16:58:40,354 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 16:58:41,023 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 16:58:41,023 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 16:58:41,160 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:58:41,160 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 16:58:41,160 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 16:58:41,161 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 16:58:41,161 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 16:58:41,161 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 16:58:41,161 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 16:58:41,161 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 16:58:41,168 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 16:58:41,239 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:00:49,844 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0000.ibw (each dataset is a channel).
2025-07-24 17:00:49,924 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 17:00:49,924 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:00:49,924 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:00:49,925 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:00:49,925 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:00:50,011 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 17:00:50,014 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:00:50,014 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:00:50,029 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:00:50,183 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:00:50,185 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:00:50,270 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:00:50,270 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:00:50,349 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 17:00:50,350 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:00:50,371 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:00:50,403 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:00:50,404 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:00:50,504 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:00:50,504 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:00:50,506 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:00:50,506 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 17:00:50,507 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:00:50,507 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:00:50,507 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:00:50,669 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:00:50,670 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:00:50,670 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:00:50,671 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:00:50,671 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:00:50,671 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 17:00:50,671 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:00:50,770 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:00:50,770 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:00:50,770 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:00:50,771 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 17:00:50,771 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:00:50,771 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:00:50,771 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:00:51,162 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:00:51,163 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:01:50,914 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:01:50,914 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:01:50,914 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:02:50,945 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:02:50,945 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:02:50,946 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:03:51,095 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:03:51,095 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:03:51,095 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:04:51,167 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:04:51,167 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:04:51,168 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:05:51,236 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:05:51,236 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:05:51,237 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:06:51,365 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:06:51,365 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:06:51,366 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:07:51,390 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:07:51,390 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:07:51,392 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:08:51,498 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:08:51,498 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:08:51,499 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:09:51,542 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:09:51,542 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:09:51,543 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:10:51,643 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:10:51,644 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:10:51,644 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:11:51,690 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:11:51,690 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:11:51,691 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:12:51,847 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:12:51,847 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:12:51,848 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:13:51,870 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:13:51,870 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 17:13:51,870 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:13:51,963 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:13:51,964 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:13:52,578 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:13:52,860 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 17:13:52,860 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:13:52,861 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:13:52,861 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:13:52,862 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:13:52,967 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:13:52,968 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:13:52,968 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:13:52,969 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 17:13:52,970 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:13:52,970 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:13:52,971 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 17:13:52,973 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:13:53,060 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:13:53,388 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:13:53,388 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:13:53,388 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:13:53,389 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:13:53,389 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:13:53,389 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
ateMsg
2025-07-24 17:13:53,389 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:13:53,389 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 17:13:53,389 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:13:53,389 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 17:13:53,389 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:13:53,389 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 17:13:53,391 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 17:13:53,391 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 17:13:53,391 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 17:13:53,393 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:13:53,489 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:13:53,489 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:13:53,490 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 17:13:54,450 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:13:54,452 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:13:54,452 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:13:55,148 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 17:13:55,149 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:13:55,266 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:13:55,267 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:13:55,267 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:13:55,267 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:13:55,267 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:13:55,267 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:13:55,269 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 17:13:55,354 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:13:55,354 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 17:13:55,354 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:16:04,375 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0001.ibw (each dataset is a channel).
2025-07-24 17:16:04,398 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 17:16:04,398 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:16:04,398 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:16:04,399 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:16:04,399 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:16:04,469 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 156, R: 146
2025-07-24 17:16:04,469 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 156, R: 146
2025-07-24 17:16:04,472 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0013149676485677496
2025-07-24 17:16:04,507 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.66233291e-08  2.44155527e-09] m.
2025-07-24 17:16:04,507 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-4.00655334e-11  2.67103556e-12] m / s.
2025-07-24 17:16:04,509 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 17:16:04,510 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:16:04,510 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:16:04,510 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:16:04,782 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:16:04,783 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:16:04,793 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:16:04,872 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:16:04,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:16:04,972 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:16:04,972 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:16:05,027 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 17:16:05,051 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace

2025-07-24 17:16:05,074 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:16:05,280 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 17:16:05,314 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:16:05,315 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:16:05,353 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:16:05,524 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:16:05,525 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:16:05,527 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:16:05,564 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:16:05,565 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:16:05,565 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 17:16:05,565 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:16:05,580 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-24 17:16:05,580 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:16:05,580 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 17:16:05,581 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:16:05,581 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:16:05,582 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:16:05,690 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:16:05,690 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:16:05,690 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:17:05,707 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:17:05,707 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:17:05,707 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:18:05,794 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:18:05,794 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:18:05,794 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:19:05,839 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:19:05,839 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:19:05,839 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:20:05,981 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:20:05,981 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:20:05,982 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:21:06,093 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:21:06,093 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:21:06,093 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:22:06,257 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:22:06,257 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:22:06,257 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:23:06,336 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:23:06,336 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:23:06,336 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:24:06,428 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:24:06,428 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:24:06,428 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:25:06,433 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:25:06,434 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:25:06,434 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:26:06,476 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:26:06,476 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:26:06,477 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:27:06,612 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:27:06,612 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:27:06,613 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:28:06,654 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:28:06,654 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:28:06,654 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:29:06,755 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:29:06,755 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 17:29:06,755 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:29:06,912 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:29:06,913 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.068006414214466182
      y: -0.00453376094763108
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:29:07,083 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.068006414214466182
      y: -0.00453376094763108
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:29:07,348 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 17:29:07,348 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:29:07,349 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:29:07,349 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:29:07,351 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:29:07,534 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:29:07,535 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:29:07,536 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:29:07,540 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:29:07,540 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:29:07,540 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 17:29:07,542 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:29:07,618 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:29:07,618 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 17:29:07,658 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 17:29:07,659 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 17:29:07,780 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 17:29:07,781 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 17:29:07,806 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 17:29:07,814 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 17:29:07,877 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 17:29:07,877 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 17:29:07,877 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:29:07,877 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:29:07,981 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:29:07,982 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 17:29:08,030 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 17:29:08,039 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 17:29:08,070 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 17:29:08,093 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 17:29:08,277 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:29:08,277 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:29:08,278 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:29:08,278 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:29:08,279 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 17:29:08,279 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:29:08,303 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:29:08,304 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:29:08,304 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 17:29:08,304 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 17:29:08,304 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 17:29:08,306 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 17:29:08,306 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 17:29:08,334 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:29:08,374 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:29:08,664 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 17:29:08,664 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:29:08,665 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 17:29:09,608 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:29:09,608 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:29:09,609 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:29:10,386 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 17:29:10,387 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:29:10,425 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:29:10,426 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:29:10,426 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:29:10,426 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:29:10,426 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:29:10,426 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 17:29:10,484 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:29:10,485 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 17:29:10,485 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:29:10,488 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:31:19,548 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0002.ibw (each dataset is a channel).
2025-07-24 17:31:19,569 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 17:31:19,569 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:31:19,569 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:31:19,570 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:31:19,570 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:31:19,664 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 139, R: 153
2025-07-24 17:31:19,664 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 139, R: 153
2025-07-24 17:31:19,667 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003559378121803263
2025-07-24 17:31:19,695 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-1.04927364e-07  9.80730610e-09] m.
2025-07-24 17:31:19,695 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-7.46341500e-11  8.04837592e-12] m / s.
2025-07-24 17:31:19,697 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 17:31:19,699 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:31:19,719 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:31:19,740 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:31:19,971 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:31:19,973 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:31:19,998 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:31:20,004 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:31:20,044 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:31:20,044 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:31:20,146 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:31:20,146 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:31:20,213 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 17:31:20,238 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:31:20,269 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:31:20,277 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:31:20,462 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 17:31:20,503 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:31:20,533 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:31:20,557 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:31:20,708 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:31:20,708 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:31:20,709 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:31:20,752 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:31:20,752 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:31:20,752 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 17:31:20,754 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:31:20,767 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:31:20,767 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:31:20,768 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 17:31:20,769 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:31:20,769 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:31:20,769 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:31:20,797 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:31:20,830 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:31:20,830 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:31:20,830 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:32:20,786 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:32:20,787 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:32:20,788 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:33:20,834 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:33:20,834 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:33:20,834 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:34:20,923 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:34:20,923 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:34:20,923 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:35:21,061 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:35:21,061 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:35:21,061 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:36:21,088 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:36:21,088 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:36:21,089 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:37:21,163 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:37:21,163 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:37:21,165 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:38:21,237 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:38:21,237 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:38:21,237 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:39:21,248 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:39:21,248 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:39:21,248 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:40:21,284 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:40:21,284 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:40:21,284 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:41:21,417 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:41:21,417 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:41:21,418 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:42:21,442 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:42:21,442 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:42:21,442 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:43:21,584 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:43:21,584 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:43:21,584 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:44:21,603 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:44:21,603 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 17:44:21,604 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:44:21,727 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:44:21,729 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.16336028465709024
      y: -0.01610857850287243
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:44:21,897 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.16336028465709024
      y: -0.01610857850287243
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:44:22,162 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 17:44:22,162 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:44:22,164 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:44:22,164 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:44:22,164 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:44:22,345 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:44:22,345 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:44:22,347 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:44:22,347 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 17:44:22,348 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:44:22,348 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:44:22,349 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:44:22,434 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:44:22,434 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 17:44:22,473 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 17:44:22,474 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 17:44:22,594 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 17:44:22,595 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 17:44:22,620 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 17:44:22,629 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 17:44:22,691 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 17:44:22,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 17:44:22,692 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:44:22,692 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:44:22,793 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:44:22,793 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 17:44:22,845 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 17:44:22,869 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 17:44:22,885 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 17:44:22,908 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 17:44:23,092 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:44:23,092 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:44:23,117 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:44:23,117 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:44:23,118 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 17:44:23,118 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:44:23,132 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:44:23,132 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:44:23,132 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 17:44:23,133 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 17:44:23,133 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 17:44:23,133 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 17:44:23,133 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 17:44:23,147 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:44:23,188 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:44:23,476 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 17:44:23,477 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:44:23,477 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 17:44:24,429 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:44:24,430 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:44:24,430 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:44:25,246 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 17:44:25,246 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:44:25,247 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:44:25,247 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:44:25,248 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:44:25,248 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:44:25,249 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 17:44:25,344 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:44:25,344 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 17:44:25,344 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:44:25,347 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:46:33,672 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0003.ibw (each dataset is a channel).
2025-07-24 17:46:33,691 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 17:46:33,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:46:33,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:46:33,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:46:33,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 17:46:33,907 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 143
2025-07-24 17:46:33,907 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 143
2025-07-24 17:46:33,909 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003467782196514127
2025-07-24 17:46:33,995 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-1.86576215e-07  1.82844840e-08] m.
2025-07-24 17:46:33,996 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-8.92498787e-11  9.26635332e-12] m / s.
2025-07-24 17:46:33,997 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 17:46:34,049 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:46:34,057 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:46:34,057 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:46:34,190 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:46:34,190 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:46:34,260 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:46:34,291 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 17:46:34,293 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:46:34,321 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:46:34,321 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:46:34,330 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 17:46:34,510 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 17:46:34,586 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:46:34,587 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:46:34,610 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:46:34,768 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 17:46:34,770 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:46:34,851 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:46:34,851 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:46:34,977 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 17:46:34,978 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 17:46:35,012 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:46:35,012 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:46:35,012 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:46:35,013 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:46:35,013 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:46:35,013 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:46:35,013 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:46:35,013 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 17:46:35,013 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:46:35,013 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 17:46:35,015 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:46:35,015 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:46:35,015 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:46:35,047 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:46:35,663 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:47:35,057 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:47:35,057 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:47:35,058 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:48:35,064 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:48:35,064 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:48:35,065 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:49:35,068 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:49:35,068 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:49:35,069 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:50:35,174 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:50:35,174 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:50:35,175 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:51:35,289 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:51:35,289 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:51:35,290 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:52:35,374 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:52:35,374 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:52:35,375 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:53:35,539 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:53:35,540 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:53:35,540 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:54:35,586 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:54:35,586 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:54:35,586 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:55:35,756 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:55:35,756 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:55:35,756 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:56:35,839 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:56:35,839 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:56:35,839 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:57:35,979 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:57:35,979 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:57:35,979 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:58:36,131 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:58:36,131 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 17:58:36,131 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 17:59:36,188 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 17:59:36,188 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 17:59:36,188 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:59:36,360 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:59:36,363 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.2564341042801912
      y: -0.025537467338072172
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:59:36,828 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.2564341042801912
      y: -0.025537467338072172
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 17:59:37,110 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 17:59:37,112 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:59:37,112 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:59:37,113 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:59:37,116 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:59:37,300 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:59:37,300 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:59:37,302 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:59:37,302 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 17:59:37,302 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:59:37,318 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:59:37,380 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:59:37,380 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 17:59:37,390 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:59:37,423 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 17:59:37,423 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 17:59:37,542 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 17:59:37,543 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 17:59:37,543 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 17:59:37,583 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 17:59:37,637 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 17:59:37,638 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 17:59:37,638 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 17:59:37,638 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:59:37,739 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:59:37,739 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 17:59:37,791 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 17:59:37,800 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 17:59:37,825 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 17:59:37,847 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 17:59:38,036 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:59:38,036 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:59:38,037 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:59:38,037 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 17:59:38,037 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 17:59:38,039 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:59:38,064 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:59:38,064 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 17:59:38,065 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 17:59:38,066 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 17:59:38,066 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 17:59:38,066 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 17:59:38,067 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 17:59:38,104 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:59:38,111 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:59:38,440 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 17:59:38,441 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 17:59:38,441 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 17:59:39,383 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 17:59:39,384 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 17:59:39,384 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 17:59:40,178 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 17:59:40,180 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 17:59:40,182 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:59:40,182 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 17:59:40,184 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 17:59:40,184 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 17:59:40,184 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 17:59:40,270 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 17:59:40,278 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 17:59:40,278 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 17:59:40,278 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 17:59:40,281 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:01:49,394 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0004.ibw (each dataset is a channel).
2025-07-24 18:01:49,415 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 18:01:49,415 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:01:49,416 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:01:49,416 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:01:49,416 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:01:49,458 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 138
2025-07-24 18:01:49,458 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 138
2025-07-24 18:01:49,460 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.002624428810901603
2025-07-24 18:01:49,489 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-2.64896635e-07  2.15633261e-08] m.
2025-07-24 18:01:49,489 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-8.55965869e-11  3.58345487e-12] m / s.
2025-07-24 18:01:49,490 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 18:01:49,524 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:01:49,586 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:01:49,594 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:01:49,747 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:01:49,748 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:01:49,748 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:01:49,789 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:01:49,890 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:01:49,891 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:01:49,991 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:01:49,992 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:01:49,995 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 18:01:50,006 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:01:50,031 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:01:50,053 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:01:50,242 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 18:01:50,271 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:01:50,311 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:01:50,318 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:01:50,479 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:01:50,479 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:01:50,479 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:01:50,479 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:01:50,479 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:01:50,479 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 18:01:50,481 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:01:50,481 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:01:50,481 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:01:50,489 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:01:50,489 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:01:50,489 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 18:01:50,489 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:01:50,536 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:01:50,677 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:01:50,678 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:01:50,678 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:02:50,626 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:02:50,626 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:02:50,626 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:03:50,701 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:03:50,701 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:03:50,702 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:04:50,752 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:04:50,752 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:04:50,752 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:05:50,803 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:05:50,803 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:05:50,803 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:06:50,903 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:06:50,903 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:06:50,903 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:07:51,024 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:07:51,025 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:07:51,025 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:08:51,041 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:08:51,041 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:08:51,041 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:09:51,169 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:09:51,170 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:09:51,170 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:10:51,324 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:10:51,325 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:10:51,325 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:11:51,409 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:11:51,409 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:11:51,411 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:12:51,473 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:12:51,473 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:12:51,473 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:13:51,481 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:13:51,481 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:13:51,481 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:14:51,547 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:14:51,547 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 18:14:51,548 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:14:51,549 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:14:51,551 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.33191165006522283
      y: -0.024368873499884109
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:14:51,671 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.33191165006522283
      y: -0.024368873499884109
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:14:51,952 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 18:14:51,952 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:14:51,953 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 18:14:51,954 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 18:14:51,955 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 18:14:52,138 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:14:52,139 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:14:52,139 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:14:52,139 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:14:52,140 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 18:14:52,140 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:14:52,222 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:14:52,222 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 18:14:52,263 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 18:14:52,263 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 18:14:52,386 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 18:14:52,418 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 18:14:52,481 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 18:14:52,481 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 18:14:52,482 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:14:52,482 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:14:52,487 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 18:14:52,487 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 18:14:52,583 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:14:52,583 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 18:14:52,638 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 18:14:52,639 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 18:14:52,639 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 18:14:52,699 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 18:14:52,880 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:14:52,880 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:14:52,882 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:14:52,882 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:14:52,883 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 18:14:52,883 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:14:52,893 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:14:52,894 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:14:52,894 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:14:52,894 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 18:14:52,894 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 18:14:52,895 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 18:14:52,895 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 18:14:52,895 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 18:14:52,978 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:14:53,285 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 18:14:53,286 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:14:53,286 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 18:14:54,254 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 18:14:54,255 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 18:14:54,255 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 18:14:54,941 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 18:14:54,941 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:14:55,060 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:14:55,061 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:14:55,061 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:14:55,063 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:14:55,131 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:14:55,131 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 18:14:55,131 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:14:55,139 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:14:55,148 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:14:55,148 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 18:17:03,461 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0005.ibw (each dataset is a channel).
2025-07-24 18:17:03,543 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 18:17:03,543 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:17:03,544 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:17:03,544 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:17:03,544 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:17:03,675 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 136, R: 143
2025-07-24 18:17:03,675 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 136, R: 143
2025-07-24 18:17:03,676 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0028477090265357774
2025-07-24 18:17:03,707 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.01345855e-07  1.84570640e-08] m.
2025-07-24 18:17:03,707 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-3.98447673e-11 -3.39563625e-12] m / s.
2025-07-24 18:17:03,708 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 18:17:03,717 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:17:03,802 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:17:03,802 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:17:03,966 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:17:03,999 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:17:04,030 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:17:04,030 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:17:04,067 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:17:04,067 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:17:04,132 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:17:04,133 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:17:04,216 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 18:17:04,217 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:17:04,217 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:17:04,277 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:17:04,459 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 18:17:04,472 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:17:04,472 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:17:04,558 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:17:04,700 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:17:04,701 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:17:04,702 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:17:04,721 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:17:04,721 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:17:04,721 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 18:17:04,722 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:17:04,737 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:17:04,737 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:17:04,737 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:17:04,737 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 18:17:04,737 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:17:04,737 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:17:04,737 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:17:04,819 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:17:04,819 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:17:04,819 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:18:04,848 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:18:04,848 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:18:04,848 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:19:04,897 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:19:04,897 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:19:04,898 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:20:05,021 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:20:05,022 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:20:05,022 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:21:05,077 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:21:05,077 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:21:05,078 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:22:05,079 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:22:05,080 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:22:05,080 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:23:05,199 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:23:05,199 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:23:05,199 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:24:05,336 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:24:05,337 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:24:05,338 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:25:05,424 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:25:05,425 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:25:05,425 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:26:05,508 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:26:05,508 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:26:05,508 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:27:05,589 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:27:05,590 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:27:05,590 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:28:05,651 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:28:05,651 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:28:05,652 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:29:05,713 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:29:05,714 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:29:05,714 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:30:05,858 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:30:05,858 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 18:30:05,859 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:30:05,859 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:30:05,862 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.33252229821235907
      y: -0.015800156476268284
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:30:06,299 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.33252229821235907
      y: -0.015800156476268284
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:30:06,581 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 18:30:06,581 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:30:06,582 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 18:30:06,582 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 18:30:06,582 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 18:30:06,764 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:30:06,764 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:30:06,766 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:30:06,766 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:30:06,837 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:30:06,837 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 18:30:06,837 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:30:06,853 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:30:06,853 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 18:30:06,893 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 18:30:06,894 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 18:30:07,016 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 18:30:07,026 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 18:30:07,049 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 18:30:07,110 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 18:30:07,110 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 18:30:07,111 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:30:07,111 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:30:07,119 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 18:30:07,212 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:30:07,213 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 18:30:07,264 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 18:30:07,264 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 18:30:07,290 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 18:30:07,327 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 18:30:07,514 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:30:07,515 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:30:07,520 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:30:07,521 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:30:07,521 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 18:30:07,522 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 18:30:07,522 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 18:30:07,523 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 18:30:07,523 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 18:30:07,552 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:30:07,568 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:30:07,568 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:30:07,568 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 18:30:07,569 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:30:07,606 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:30:07,894 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 18:30:07,895 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:30:07,895 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 18:30:08,866 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 18:30:08,867 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 18:30:08,867 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 18:30:09,627 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 18:30:09,628 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:30:09,669 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:30:09,669 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:30:09,669 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:30:09,669 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:30:09,669 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 18:30:09,670 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:30:09,670 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:30:09,670 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 18:30:09,730 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:30:09,768 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:32:18,083 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0006.ibw (each dataset is a channel).
2025-07-24 18:32:18,102 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 18:32:18,102 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:32:18,102 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:32:18,102 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:32:18,103 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:32:18,297 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 143, R: 145
2025-07-24 18:32:18,297 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 143, R: 145
2025-07-24 18:32:18,299 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0038624330994747034
2025-07-24 18:32:18,329 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.58786197e-07  1.31016160e-08] m.
2025-07-24 18:32:18,329 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-6.28021612e-11 -5.85535702e-12] m / s.
2025-07-24 18:32:18,330 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 18:32:18,330 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:32:18,374 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:32:18,390 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:32:18,586 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:32:18,586 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:32:18,593 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:32:18,614 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:32:18,637 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:32:18,653 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:32:18,687 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:32:18,687 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:32:18,845 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 18:32:18,893 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:32:18,901 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:32:18,917 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:32:19,092 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 18:32:19,165 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:32:19,173 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:32:19,179 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:32:19,340 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:32:19,340 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:32:19,340 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:32:19,340 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:32:19,340 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:32:19,340 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:32:19,342 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 18:32:19,342 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:32:19,342 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:32:19,342 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 18:32:19,342 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:32:19,342 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:32:19,342 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:32:19,367 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:32:19,368 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:32:19,368 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:32:19,430 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:33:19,454 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:33:19,454 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:33:19,454 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:34:19,585 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:34:19,585 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:34:19,585 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:35:19,739 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:35:19,740 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:35:19,740 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:36:19,839 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:36:19,839 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:36:19,839 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:37:19,928 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:37:19,928 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:37:19,929 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:38:19,977 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:38:19,977 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:38:19,978 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:39:20,069 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:39:20,069 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:39:20,069 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:40:20,219 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:40:20,219 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:40:20,220 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:41:20,379 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:41:20,379 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:41:20,379 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:42:20,452 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:42:20,452 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:42:20,452 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:43:20,499 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:43:20,499 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:43:20,499 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:44:20,549 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:44:20,549 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:44:20,549 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:45:20,624 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:45:20,626 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 18:45:20,627 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:45:20,859 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:45:20,860 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.407949136959098
      y: -0.00851791117691937
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:45:20,920 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.407949136959098
      y: -0.00851791117691937
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 18:45:21,203 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 18:45:21,204 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:45:21,204 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 18:45:21,206 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 18:45:21,206 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 18:45:21,390 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:45:21,390 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:45:21,426 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:45:21,426 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:45:21,426 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 18:45:21,427 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:45:21,472 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:45:21,472 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 18:45:21,495 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:45:21,512 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 18:45:21,512 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 18:45:21,635 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 18:45:21,636 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 18:45:21,636 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 18:45:21,691 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 18:45:21,732 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 18:45:21,732 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 18:45:21,732 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:45:21,732 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:45:21,833 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:45:21,833 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 18:45:21,881 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 18:45:21,896 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 18:45:21,922 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 18:45:21,959 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 18:45:22,119 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:45:22,119 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:45:22,119 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:45:22,162 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:45:22,162 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:45:22,163 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:45:22,163 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:45:22,164 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 18:45:22,164 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 18:45:22,164 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 18:45:22,164 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:45:22,165 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 18:45:22,165 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 18:45:22,166 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 18:45:22,199 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:45:22,520 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 18:45:22,520 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:45:22,521 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 18:45:23,472 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 18:45:23,473 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 18:45:23,473 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 18:45:24,208 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 18:45:24,208 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:45:24,280 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:45:24,280 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:45:24,280 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:45:24,280 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:45:24,280 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 18:45:24,281 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:45:24,281 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 18:45:24,307 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 18:45:24,309 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:45:24,360 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:47:32,969 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0007.ibw (each dataset is a channel).
2025-07-24 18:47:32,987 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 18:47:32,987 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:47:32,988 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:47:32,988 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:47:32,988 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 18:47:33,084 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 136, R: 146
2025-07-24 18:47:33,085 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 136, R: 146
2025-07-24 18:47:33,086 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0026077477404008904
2025-07-24 18:47:33,115 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.77245853e-07  1.28136420e-08] m.
2025-07-24 18:47:33,115 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-2.01829332e-11 -3.14857387e-13] m / s.
2025-07-24 18:47:33,116 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 18:47:33,142 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:47:33,163 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:47:33,163 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:47:33,424 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:47:33,426 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:47:33,430 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:47:33,430 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:47:33,469 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 18:47:33,469 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 18:47:33,570 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 18:47:33,570 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 18:47:33,667 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 18:47:33,693 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:47:33,693 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:47:33,703 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:47:33,917 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 18:47:33,958 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:47:33,958 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:47:33,983 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:47:34,176 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:47:34,177 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 18:47:34,223 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 18:47:34,224 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 18:47:34,224 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 18:47:34,226 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:47:34,226 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:47:34,226 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:47:34,254 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 18:47:34,254 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 18:47:34,254 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 18:47:34,254 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 18:47:34,257 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 18:47:34,257 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 18:47:34,257 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 18:47:34,263 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 18:48:34,317 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:48:34,317 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:48:34,317 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:49:34,463 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:49:34,463 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:49:34,464 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:50:34,631 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:50:34,631 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:50:34,631 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:51:34,644 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:51:34,645 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:51:34,645 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:52:34,767 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:52:34,767 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:52:34,768 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:53:34,798 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:53:34,798 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:53:34,798 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:54:34,913 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:54:34,914 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:54:34,914 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:55:34,972 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:55:34,972 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:55:34,973 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:56:35,035 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:56:35,035 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:56:35,035 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:57:35,141 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:57:35,141 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:57:35,142 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:58:35,252 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:58:35,252 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:58:35,253 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 18:59:35,295 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 18:59:35,295 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 18:59:35,295 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:00:35,338 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:00:35,338 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 19:00:35,340 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:00:35,341 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:00:35,343 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.39304279828618177
      y: -0.012567206826407688
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:00:35,742 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.39304279828618177
      y: -0.012567206826407688
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:00:36,027 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 19:00:36,027 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:00:36,028 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:00:36,028 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:00:36,029 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:00:36,215 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:00:36,215 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:00:36,296 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:00:36,296 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:00:36,296 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 19:00:36,296 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 19:00:36,296 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:00:36,305 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:00:36,337 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 19:00:36,337 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 19:00:36,475 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 19:00:36,476 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 19:00:36,555 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 19:00:36,556 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 19:00:36,556 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:00:36,556 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:00:36,561 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 19:00:36,561 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 19:00:36,657 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:00:36,657 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 19:00:36,725 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 19:00:36,757 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 19:00:36,826 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 19:00:36,826 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 19:00:36,972 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:00:36,972 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:00:36,972 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:00:36,973 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

REE
2025-07-24 19:00:36,973 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 19:00:36,973 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:00:36,974 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 19:00:36,975 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 19:00:36,975 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 19:00:36,975 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 19:00:37,036 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:00:37,341 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 19:00:37,342 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:00:37,342 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 19:00:38,297 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:00:38,298 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:00:38,298 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:00:39,050 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 19:00:39,051 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:00:39,087 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:00:39,088 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:00:39,088 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:00:39,089 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 19:00:39,089 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:00:39,089 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:00:39,089 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:00:39,152 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:00:39,179 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:00:39,179 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 19:02:47,853 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0008.ibw (each dataset is a channel).
2025-07-24 19:02:47,872 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 19:02:47,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:02:47,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:02:47,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:02:47,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:02:48,053 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 137
2025-07-24 19:02:48,054 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 137
2025-07-24 19:02:48,055 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003273169157398798
2025-07-24 19:02:48,083 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.25335281e-07  9.01736893e-09] m.
2025-07-24 19:02:48,083 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-5.25651932e-11 -4.14959870e-12] m / s.
2025-07-24 19:02:48,085 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 19:02:48,119 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:02:48,125 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:02:48,125 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:02:48,349 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:02:48,373 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:02:48,373 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:02:48,377 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:02:48,377 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:02:48,401 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:02:48,474 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:02:48,474 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:02:48,581 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 19:02:48,583 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:02:48,657 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace

2025-07-24 19:02:48,833 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 19:02:48,867 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:02:48,921 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:02:48,921 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:02:49,084 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:02:49,084 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:02:49,148 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:02:49,155 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:02:49,155 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:02:49,155 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 19:02:49,155 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:02:49,173 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:02:49,173 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:02:49,173 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:02:49,186 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:02:49,186 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:02:49,187 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:02:49,187 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 19:02:49,187 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:02:49,187 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:02:49,187 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:03:49,212 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:03:49,212 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:03:49,213 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:04:49,359 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:04:49,359 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:04:49,359 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:05:49,500 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:05:49,500 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:05:49,500 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:06:49,630 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:06:49,631 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:06:49,631 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:07:49,757 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:07:49,757 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:07:49,759 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:08:49,907 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:08:49,907 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:08:49,907 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:09:50,048 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:09:50,048 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:09:50,049 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:10:50,079 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:10:50,079 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:10:50,080 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:11:50,205 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:11:50,205 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:11:50,206 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:12:50,233 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:12:50,233 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:12:50,233 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:13:50,313 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:13:50,313 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:13:50,313 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:14:50,322 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:14:50,322 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:14:50,322 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:15:50,452 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:15:50,452 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 19:15:50,453 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:15:50,530 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:15:50,533 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46649512189878073
      y: -0.0057681309631126051
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:15:51,122 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46649512189878073
      y: -0.0057681309631126051
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:15:51,403 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 19:15:51,403 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:15:51,404 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:15:51,405 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:15:51,405 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:15:51,589 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:15:51,589 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:15:51,589 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:15:51,590 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 19:15:51,590 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:15:51,627 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:15:51,651 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:15:51,659 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:15:51,659 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 19:15:51,716 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 19:15:51,716 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 19:15:51,835 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 19:15:51,893 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 19:15:51,923 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 19:15:51,932 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 19:15:51,933 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 19:15:51,933 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 19:15:51,933 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:15:51,933 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:15:52,034 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:15:52,036 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 19:15:52,071 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 19:15:52,073 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 19:15:52,073 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 19:15:52,157 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 19:15:52,321 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:15:52,321 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:15:52,321 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:15:52,321 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:15:52,323 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 19:15:52,323 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:15:52,332 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:15:52,333 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:15:52,333 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 19:15:52,334 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 19:15:52,334 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 19:15:52,335 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 19:15:52,335 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 19:15:52,356 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:15:52,409 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:15:52,724 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 19:15:52,724 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:15:52,725 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 19:15:53,687 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:15:53,687 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:15:53,687 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:15:54,444 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 19:15:54,444 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:15:54,499 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:15:54,499 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:15:54,499 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:15:54,499 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 19:15:54,499 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:15:54,499 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:15:54,500 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 19:15:54,528 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:15:54,536 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:15:54,546 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:18:03,645 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0009.ibw (each dataset is a channel).
2025-07-24 19:18:03,723 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 19:18:03,723 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:18:03,724 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:18:03,724 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:18:03,724 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:18:03,919 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 137, R: 145
2025-07-24 19:18:03,919 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 137, R: 145
2025-07-24 19:18:03,921 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0030815057794175357
2025-07-24 19:18:03,951 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.42832277e-07  1.17805069e-08] m.
2025-07-24 19:18:03,951 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.91140474e-11  3.01850396e-12] m / s.
2025-07-24 19:18:03,953 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 19:18:03,953 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:18:03,955 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:18:04,040 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:18:04,203 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:18:04,203 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:18:04,217 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:18:04,219 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:18:04,234 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:18:04,303 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:18:04,304 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:18:04,304 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:18:04,462 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 19:18:04,463 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:18:04,474 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:18:04,515 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:18:04,702 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 19:18:04,725 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:18:04,740 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:18:04,796 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:18:04,947 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:18:04,948 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:18:04,949 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:18:04,949 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:18:04,949 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:18:04,949 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 19:18:04,950 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:18:04,990 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:18:04,992 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:18:04,993 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:18:04,993 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:18:05,006 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:18:05,006 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:18:05,006 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 19:18:05,006 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:18:05,006 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:18:05,007 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:19:05,095 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:19:05,095 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:19:05,095 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:20:05,241 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:20:05,241 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:20:05,242 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:21:05,289 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:21:05,289 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:21:05,290 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:22:05,460 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:22:05,460 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:22:05,460 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:23:05,590 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:23:05,590 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:23:05,590 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:24:05,686 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:24:05,687 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:24:05,688 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:25:05,726 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:25:05,726 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:25:05,726 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:26:05,823 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:26:05,823 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:26:05,823 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:27:05,907 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:27:05,907 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:27:05,907 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:28:06,064 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:28:06,064 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:28:06,066 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:29:06,172 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:29:06,172 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:29:06,172 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:30:06,248 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:30:06,248 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:30:06,248 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:31:06,384 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:31:06,384 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 19:31:06,384 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:31:06,430 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:31:06,431 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45780858547191888
      y: -0.014145576221925964
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:31:07,052 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45780858547191888
      y: -0.014145576221925964
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:31:07,320 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 19:31:07,321 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:31:07,322 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:31:07,323 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:31:07,325 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:31:07,509 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:31:07,509 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:31:07,509 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:31:07,509 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:31:07,514 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:31:07,514 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 19:31:07,514 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:31:07,592 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:31:07,592 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 19:31:07,632 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 19:31:07,632 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 19:31:07,755 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 19:31:07,778 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 19:31:07,786 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 19:31:07,851 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 19:31:07,851 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 19:31:07,851 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:31:07,851 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:31:07,856 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 19:31:07,952 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:31:07,952 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 19:31:08,003 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 19:31:08,004 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 19:31:08,043 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 19:31:08,067 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 19:31:08,248 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:31:08,248 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:31:08,277 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:31:08,278 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:31:08,278 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 19:31:08,279 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 19:31:08,279 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 19:31:08,281 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 19:31:08,281 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 19:31:08,293 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:31:08,293 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:31:08,293 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 19:31:08,294 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:31:08,309 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:31:08,349 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:31:08,637 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 19:31:08,637 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:31:08,639 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 19:31:09,590 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:31:09,591 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:31:09,592 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:31:10,400 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 19:31:10,401 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:31:10,402 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:31:10,402 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:31:10,499 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:31:10,499 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:31:10,499 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 19:31:10,499 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:31:10,499 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 19:31:10,502 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:31:10,508 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:33:19,599 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0010.ibw (each dataset is a channel).
2025-07-24 19:33:19,620 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 19:33:19,620 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:33:19,621 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:33:19,621 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:33:19,621 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:33:19,807 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 140, R: 144
2025-07-24 19:33:19,807 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 140, R: 144
2025-07-24 19:33:19,809 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003316346911372535
2025-07-24 19:33:19,840 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.66666515e-07  4.70269003e-09] m.
2025-07-24 19:33:19,840 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-2.6022234e-11 -7.7275640e-12] m / s.
2025-07-24 19:33:19,841 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 19:33:19,876 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:33:19,914 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:33:19,915 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:33:20,096 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:33:20,097 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:33:20,110 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:33:20,156 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:33:20,180 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:33:20,180 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:33:20,198 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:33:20,198 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:33:20,360 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 19:33:20,437 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:33:20,444 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:33:20,444 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:33:20,609 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 19:33:20,709 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:33:20,718 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:33:20,858 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:33:20,858 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:33:20,859 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:33:20,859 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-24 19:33:20,860 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:33:20,861 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 19:33:20,861 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:33:20,861 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:33:20,861 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:33:20,865 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:33:20,865 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:33:20,865 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 19:33:20,865 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:33:20,882 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:33:20,882 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:33:20,883 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:34:20,935 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:34:20,935 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:34:20,936 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:35:21,032 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:35:21,032 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:35:21,033 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:36:21,114 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:36:21,114 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:36:21,116 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:37:21,186 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:37:21,186 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:37:21,188 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:38:21,228 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:38:21,228 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:38:21,228 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:39:21,286 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:39:21,286 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:39:21,286 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:40:21,427 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:40:21,427 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:40:21,427 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:41:21,582 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:41:21,582 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:41:21,582 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:42:21,721 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:42:21,721 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:42:21,721 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:43:21,791 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:43:21,791 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:43:21,791 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:44:21,852 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:44:21,852 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:44:21,852 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:45:21,897 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:45:21,897 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:45:21,897 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:46:22,025 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:46:22,025 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 19:46:22,025 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:46:22,244 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:46:22,246 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48705282735604272
      y: 0.0013512302559978077
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:46:22,635 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48705282735604272
      y: 0.0013512302559978077
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 19:46:22,931 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 19:46:22,932 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:46:22,932 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:46:22,933 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:46:22,933 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:46:23,117 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:46:23,117 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:46:23,123 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:46:23,131 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:46:23,154 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:46:23,154 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 19:46:23,155 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:46:23,200 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:46:23,200 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 19:46:23,241 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 19:46:23,242 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 19:46:23,364 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 19:46:23,365 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 19:46:23,388 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 19:46:23,412 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 19:46:23,460 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 19:46:23,460 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 19:46:23,460 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:46:23,460 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:46:23,561 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:46:23,561 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 19:46:23,615 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 19:46:23,638 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 19:46:23,654 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 19:46:23,693 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 19:46:23,865 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:46:23,865 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:46:23,901 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:46:23,901 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:46:23,901 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 19:46:23,902 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 19:46:23,902 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 19:46:23,902 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 19:46:23,904 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 19:46:23,917 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:46:23,932 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:46:23,932 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:46:23,932 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 19:46:23,932 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:46:23,972 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:46:24,247 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 19:46:24,247 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:46:24,248 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 19:46:25,206 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 19:46:25,206 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 19:46:25,208 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 19:46:25,948 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 19:46:25,949 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:46:26,005 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:46:26,006 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:46:26,006 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:46:26,007 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:46:26,007 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:46:26,007 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 19:46:26,007 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:46:26,008 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:46:26,008 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 19:46:26,051 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:48:35,068 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0011.ibw (each dataset is a channel).
2025-07-24 19:48:35,095 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 19:48:35,095 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:48:35,096 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:48:35,096 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:48:35,096 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 19:48:35,120 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 129, R: 137
2025-07-24 19:48:35,120 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 129, R: 137
2025-07-24 19:48:35,123 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003395468923580365
2025-07-24 19:48:35,150 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.77368159e-07  4.11358640e-10] m.
2025-07-24 19:48:35,151 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.16885894e-11 -4.68709393e-12] m / s.
2025-07-24 19:48:35,151 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 19:48:35,205 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:48:35,226 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:48:35,226 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:48:35,418 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:48:35,487 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:48:35,494 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:48:35,494 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:48:35,598 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 19:48:35,599 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 19:48:35,670 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 19:48:35,700 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 19:48:35,701 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 19:48:35,701 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:48:35,759 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:48:35,759 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:48:35,767 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 19:48:35,922 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 19:48:35,923 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
25-07-24 19:48:35,923 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:48:36,165 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:48:36,165 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 19:48:36,165 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 19:48:36,167 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 19:48:36,167 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 19:48:36,167 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 19:48:36,180 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 19:48:36,181 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 19:48:36,181 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 19:48:36,181 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 19:48:36,181 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:48:36,181 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:48:36,181 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:48:36,205 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 19:48:36,383 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 19:48:36,384 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 19:49:36,270 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:49:36,270 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:49:36,270 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:50:36,355 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:50:36,355 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:50:36,355 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:51:36,488 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:51:36,488 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:51:36,489 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:52:36,548 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:52:36,548 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:52:36,549 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:53:36,655 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:53:36,655 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:53:36,655 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:54:36,738 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:54:36,739 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:54:36,739 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:55:36,749 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:55:36,749 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:55:36,749 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:56:36,761 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:56:36,761 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:56:36,761 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:57:36,875 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:57:36,875 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:57:36,876 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:58:36,910 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:58:36,910 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:58:36,911 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 19:59:36,946 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 19:59:36,946 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 19:59:36,947 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:00:37,011 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:00:37,011 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:00:37,011 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:01:37,095 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:01:37,095 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 20:01:37,097 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:01:37,142 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:01:37,143 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48651744733787178
      y: 0.0032574820190013477
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:01:37,189 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48651744733787178
      y: 0.0032574820190013477
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:01:37,450 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 20:01:37,451 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:01:37,451 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:01:37,451 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:01:37,452 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:01:37,631 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:01:37,632 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:01:37,632 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:01:37,632 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:01:37,675 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:01:37,675 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 20:01:37,675 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:01:37,707 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:01:37,707 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 20:01:37,763 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 20:01:37,763 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 20:01:37,865 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 20:01:37,867 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 20:01:37,893 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 20:01:37,918 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 20:01:37,982 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 20:01:37,982 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 20:01:37,982 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:01:37,982 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:01:38,083 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:01:38,083 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 20:01:38,101 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 20:01:38,127 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 20:01:38,159 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 20:01:38,200 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 20:01:38,340 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:01:38,341 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:01:38,342 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:01:38,394 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:01:38,394 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:01:38,394 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 20:01:38,395 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 20:01:38,395 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 20:01:38,396 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 20:01:38,397 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 20:01:38,409 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:01:38,409 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:01:38,410 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 20:01:38,410 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:01:38,425 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:01:38,769 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 20:01:38,769 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:01:38,769 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 20:01:39,711 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:01:39,712 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:01:39,712 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:01:40,415 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 20:01:40,415 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:01:40,515 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:01:40,515 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:01:40,515 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:01:40,515 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:01:40,515 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 20:01:40,515 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:01:40,517 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 20:01:40,517 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:01:40,517 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:03:49,249 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0012.ibw (each dataset is a channel).
2025-07-24 20:03:49,269 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 20:03:49,269 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:03:49,269 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:03:49,269 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:03:49,270 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:03:49,429 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 143
2025-07-24 20:03:49,430 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 143
2025-07-24 20:03:49,432 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.001378453061113355
2025-07-24 20:03:49,519 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.88786059e-07 -5.69752101e-09] m.
2025-07-24 20:03:49,519 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.24858580e-11 -6.68026552e-12] m / s.
2025-07-24 20:03:49,520 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 20:03:49,520 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:03:49,521 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:03:49,534 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:03:49,776 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:03:49,782 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:03:49,782 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:03:49,787 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:03:49,797 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:03:49,803 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:03:49,884 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:03:49,884 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:03:50,031 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 20:03:50,054 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:03:50,069 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:03:50,078 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:03:50,277 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 20:03:50,319 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:03:50,335 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:03:50,358 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:03:50,524 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:03:50,524 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:03:50,525 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:03:50,525 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:03:50,525 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:03:50,527 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 20:03:50,527 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:03:50,570 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:03:50,571 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:03:50,571 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:03:50,583 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:03:50,583 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:03:50,583 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 20:03:50,584 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:03:50,585 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:03:50,585 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:03:50,599 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:04:50,676 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:04:50,676 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:04:50,677 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:05:50,825 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:05:50,825 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:05:50,825 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:06:50,934 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:06:50,934 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:06:50,934 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:07:51,011 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:07:51,011 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:07:51,011 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:08:51,115 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:08:51,115 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:08:51,116 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:09:51,265 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:09:51,265 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:09:51,265 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:10:51,386 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:10:51,386 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:10:51,386 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:11:51,420 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:11:51,420 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:11:51,421 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:12:51,453 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:12:51,453 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:12:51,453 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:13:51,606 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:13:51,606 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:13:51,607 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:14:51,695 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:14:51,696 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:14:51,696 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:15:51,821 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:15:51,821 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:15:51,823 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:16:51,835 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:16:51,835 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 20:16:51,835 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:16:52,037 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:16:52,039 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49856477765194906
      y: 0.010929394855592578
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:16:52,710 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49856477765194906
      y: 0.010929394855592578
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:16:52,995 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 20:16:52,996 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:16:52,996 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:16:52,997 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:16:52,997 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:16:53,178 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:16:53,178 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:16:53,180 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:16:53,187 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:16:53,263 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:16:53,263 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:16:53,263 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 20:16:53,264 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:16:53,264 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 20:16:53,305 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 20:16:53,305 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 20:16:53,421 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 20:16:53,421 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 20:16:53,450 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 20:16:53,459 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 20:16:53,522 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 20:16:53,522 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 20:16:53,522 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:16:53,522 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:16:53,624 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:16:53,624 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 20:16:53,672 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 20:16:53,684 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 20:16:53,715 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 20:16:53,740 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 20:16:53,919 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:16:53,919 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:16:53,920 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:16:53,920 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:16:53,921 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 20:16:53,921 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:16:53,948 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:16:53,949 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:16:53,949 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 20:16:53,949 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 20:16:53,949 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 20:16:53,949 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 20:16:53,950 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 20:16:53,979 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:16:54,019 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:16:54,312 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 20:16:54,313 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:16:54,314 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 20:16:55,267 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:16:55,267 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:16:55,268 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:16:56,050 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 20:16:56,050 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:16:56,058 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:16:56,059 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:16:56,059 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:16:56,060 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:16:56,059 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:16:56,060 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 20:16:56,060 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 20:16:56,060 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:16:56,101 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:16:56,152 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:19:04,816 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0013.ibw (each dataset is a channel).
2025-07-24 20:19:04,888 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 20:19:04,888 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:19:04,889 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:19:04,889 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:19:04,889 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:19:04,940 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 140, R: 147
2025-07-24 20:19:04,940 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 140, R: 147
2025-07-24 20:19:04,941 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0030890310375259657
2025-07-24 20:19:04,970 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.94699218e-07 -2.61550355e-09] m.
2025-07-24 20:19:04,971 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-6.45807690e-12  3.36603636e-12] m / s.
2025-07-24 20:19:04,972 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 20:19:04,972 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:19:05,057 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:19:05,057 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:19:05,233 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:19:05,253 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:19:05,323 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:19:05,323 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:19:05,376 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:19:05,376 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:19:05,478 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:19:05,478 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:19:05,479 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 20:19:05,481 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:19:05,481 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:19:05,531 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:19:05,725 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 20:19:05,740 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:19:05,740 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:19:05,811 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:19:05,961 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:19:05,961 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:19:05,961 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:19:06,004 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:19:06,005 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:19:06,005 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:19:06,005 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 20:19:06,005 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:19:06,005 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:19:06,005 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:19:06,020 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:19:06,020 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:19:06,020 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 20:19:06,020 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:19:06,162 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:19:06,163 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:19:06,165 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:20:06,129 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:20:06,130 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:20:06,130 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:21:06,139 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:21:06,139 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:21:06,141 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:22:06,273 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:22:06,273 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:22:06,274 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:23:06,419 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:23:06,419 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:23:06,420 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:24:06,423 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:24:06,423 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:24:06,423 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:25:06,501 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:25:06,501 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:25:06,501 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:26:06,602 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:26:06,602 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:26:06,602 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:27:06,768 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:27:06,768 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:27:06,770 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:28:06,788 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:28:06,789 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:28:06,789 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:29:06,905 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:29:06,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:29:06,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:30:06,986 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:30:06,986 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:30:06,986 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:31:07,065 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:31:07,065 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:31:07,065 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:32:07,103 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:32:07,103 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 20:32:07,103 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:32:07,275 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:32:07,277 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49975459264654987
      y: -1.94257302507077e-05
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:32:07,560 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49975459264654987
      y: -1.94257302507077e-05
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:32:07,841 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 20:32:07,842 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:32:07,842 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:32:07,842 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:32:07,843 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:32:08,022 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:32:08,023 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:32:08,023 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:32:08,103 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:32:08,103 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 20:32:08,114 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:32:08,114 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:32:08,114 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 20:32:08,114 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:32:08,156 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 20:32:08,156 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 20:32:08,261 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 20:32:08,262 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 20:32:08,262 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 20:32:08,312 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 20:32:08,374 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 20:32:08,375 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 20:32:08,375 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:32:08,375 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:32:08,476 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:32:08,477 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 20:32:08,508 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 20:32:08,522 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 20:32:08,522 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 20:32:08,593 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 20:32:08,745 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:32:08,745 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:32:08,745 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:32:08,745 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:32:08,745 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:32:08,745 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 20:32:08,746 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:32:08,786 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:32:08,786 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:32:08,786 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 20:32:08,786 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 20:32:08,786 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 20:32:08,786 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 20:32:08,786 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 20:32:09,160 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 20:32:09,160 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:32:09,161 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 20:32:10,116 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:32:10,116 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:32:10,117 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:32:10,819 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 20:32:10,820 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:32:10,921 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:32:10,921 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:32:10,921 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:32:10,921 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:32:10,922 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:32:10,922 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 20:32:10,966 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:32:10,966 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 20:32:10,966 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:32:11,012 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:34:19,907 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0014.ibw (each dataset is a channel).
2025-07-24 20:34:19,926 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 20:34:19,926 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:34:19,928 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:34:19,928 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:34:19,928 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:34:19,952 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 133, R: 143
2025-07-24 20:34:19,953 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 133, R: 143
2025-07-24 20:34:19,954 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0025270496270917964
2025-07-24 20:34:19,983 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.00608283e-07 -4.93935580e-09] m.
2025-07-24 20:34:19,984 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-6.45807690e-12 -2.53976158e-12] m / s.
2025-07-24 20:34:19,985 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 20:34:19,986 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:34:19,999 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:34:20,052 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:34:20,244 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:34:20,244 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:34:20,279 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:34:20,318 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:34:20,406 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:34:20,406 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:34:20,491 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 20:34:20,505 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:34:20,507 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:34:20,507 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:34:20,507 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:34:20,560 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:34:20,582 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:34:20,726 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 20:34:20,728 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:34:20,728 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:34:20,769 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:34:20,957 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:34:20,957 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:34:20,987 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:34:20,987 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE

2025-07-24 20:34:20,987 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 20:34:20,987 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 20:34:20,988 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:34:20,988 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:34:20,988 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:34:20,988 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:34:21,011 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:34:21,034 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:34:21,192 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:34:21,194 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:35:21,073 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:35:21,073 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:35:21,074 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:36:21,129 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:36:21,129 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:36:21,129 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:37:21,269 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:37:21,269 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:37:21,271 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:38:21,295 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:38:21,295 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:38:21,296 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:39:21,408 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:39:21,408 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:39:21,408 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:40:21,568 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:40:21,568 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:40:21,569 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:41:21,654 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:41:21,654 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:41:21,654 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:42:21,801 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:42:21,802 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:42:21,802 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:43:21,944 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:43:21,944 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:43:21,945 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:44:22,103 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:44:22,103 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:44:22,104 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:45:22,241 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:45:22,241 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:45:22,243 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:46:22,261 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:46:22,261 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:46:22,262 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:47:22,405 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:47:22,405 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 20:47:22,405 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:47:22,638 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:47:22,640 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.50566608321137585
      y: 0.0069284320197774
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:47:23,295 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.50566608321137585
      y: 0.0069284320197774
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 20:47:23,576 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 20:47:23,576 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:47:23,576 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:47:23,577 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:47:23,577 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:47:23,757 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:47:23,757 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:47:23,757 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:47:23,758 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 20:47:23,758 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:47:23,823 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:47:23,831 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:47:23,831 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 20:47:23,846 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:47:23,887 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 20:47:23,888 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 20:47:23,989 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 20:47:23,989 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 20:47:23,990 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 20:47:23,990 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 20:47:24,105 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 20:47:24,105 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 20:47:24,105 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:47:24,105 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:47:24,206 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:47:24,207 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 20:47:24,223 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 20:47:24,251 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition

2025-07-24 20:47:24,276 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 20:47:24,454 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:47:24,455 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:47:24,486 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:47:24,486 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:47:24,486 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 20:47:24,486 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:47:24,518 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:47:24,518 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:47:24,518 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 20:47:24,518 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 20:47:24,518 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 20:47:24,518 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:47:24,558 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:47:24,745 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 20:47:24,745 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 20:47:24,894 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 20:47:24,894 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:47:24,895 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 20:47:25,873 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 20:47:25,873 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 20:47:25,873 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 20:47:26,665 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 20:47:26,666 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:47:26,674 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:47:26,675 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:47:26,675 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:47:26,675 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 20:47:26,686 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:47:26,686 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 20:47:26,686 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:47:26,702 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:47:26,740 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:47:26,768 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:49:35,504 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0015.ibw (each dataset is a channel).
2025-07-24 20:49:35,523 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 20:49:35,524 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:49:35,524 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:49:35,524 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:49:35,524 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 20:49:35,687 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 141
2025-07-24 20:49:35,688 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 141
2025-07-24 20:49:35,689 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003922645216089992
2025-07-24 20:49:35,719 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.98289361e-07 -2.26548787e-08] m.
2025-07-24 20:49:35,719 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 2.53268477e-12 -1.93485769e-11] m / s.
2025-07-24 20:49:35,720 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 20:49:35,727 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:49:35,753 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:49:35,758 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:49:35,988 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:49:35,993 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:49:36,003 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 20:49:36,003 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 20:49:36,025 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:49:36,034 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:49:36,104 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 20:49:36,104 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 20:49:36,230 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 20:49:36,259 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:49:36,289 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:49:36,312 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:49:36,475 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 20:49:36,476 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:49:36,522 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:49:36,554 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:49:36,713 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:49:36,713 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 20:49:36,715 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 20:49:36,715 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 20:49:36,716 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 20:49:36,716 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:49:36,716 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:49:36,716 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:49:36,727 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 20:49:36,727 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 20:49:36,727 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 20:49:36,727 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 20:49:36,752 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 20:49:36,788 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 20:49:36,790 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 20:49:36,790 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 20:49:36,790 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 20:50:36,720 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:50:36,720 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:50:36,720 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:51:36,865 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:51:36,865 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:51:36,866 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:52:37,038 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:52:37,038 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:52:37,038 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:53:37,131 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:53:37,131 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:53:37,132 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:54:37,255 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:54:37,255 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:54:37,256 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:55:37,298 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:55:37,298 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:55:37,299 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:56:37,427 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:56:37,427 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:56:37,427 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:57:37,509 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:57:37,510 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:57:37,510 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:58:37,529 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:58:37,529 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:58:37,530 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 20:59:37,557 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 20:59:37,557 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 20:59:37,558 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:00:37,583 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:00:37,583 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:00:37,584 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:01:37,653 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:01:37,654 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:01:37,654 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:02:37,768 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:02:37,768 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 21:02:37,768 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:02:38,002 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:02:38,004 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49630642114028151
      y: 0.037803651439794847
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:02:38,109 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49630642114028151
      y: 0.037803651439794847
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:02:38,376 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 21:02:38,376 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:02:38,377 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:02:38,378 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:02:38,379 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:02:38,560 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:02:38,561 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:02:38,566 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:02:38,567 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 21:02:38,567 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:02:38,644 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:02:38,644 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:02:38,644 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 21:02:38,653 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:02:38,684 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 21:02:38,686 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 21:02:38,806 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 21:02:38,807 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d

2025-07-24 21:02:38,808 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 21:02:38,904 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 21:02:38,904 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 21:02:38,904 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:02:38,904 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:02:39,006 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:02:39,006 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 21:02:39,053 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 21:02:39,067 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition

2025-07-24 21:02:39,092 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 21:02:39,287 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:02:39,287 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:02:39,300 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:02:39,300 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:02:39,300 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 21:02:39,300 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:02:39,331 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:02:39,331 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:02:39,331 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:02:39,331 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 21:02:39,332 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 21:02:39,332 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 21:02:39,332 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 21:02:39,332 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 21:02:39,370 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:02:39,692 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 21:02:39,692 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:02:39,694 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 21:02:40,681 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:02:40,681 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:02:40,682 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:02:41,465 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 21:02:41,467 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:02:41,491 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:02:41,491 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:02:41,491 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:02:41,491 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:02:41,492 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 21:02:41,562 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:02:41,562 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 21:02:41,562 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:02:41,568 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:02:41,585 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:04:51,127 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0016.ibw (each dataset is a channel).
2025-07-24 21:04:51,145 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 21:04:51,146 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:04:51,146 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:04:51,147 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:04:51,147 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:04:51,202 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 139, R: 136
2025-07-24 21:04:51,202 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 139, R: 136
2025-07-24 21:04:51,204 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004206302967313112
2025-07-24 21:04:51,289 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.11719197e-07 -1.43806008e-08] m.
2025-07-24 21:04:51,289 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.46724222e-11  9.03984970e-12] m / s.
2025-07-24 21:04:51,291 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 21:04:51,292 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:04:51,334 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:04:51,359 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:04:51,541 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:04:51,554 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:04:51,601 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:04:51,641 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:04:51,659 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:04:51,659 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:04:51,760 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:04:51,761 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:04:51,792 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 21:04:51,793 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:04:51,819 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:04:51,866 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:04:52,037 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 21:04:52,078 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:04:52,085 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:04:52,132 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:04:52,273 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:04:52,273 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:04:52,274 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:04:52,348 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:04:52,348 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:04:52,348 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:04:52,348 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:04:52,348 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.

2025-07-24 21:04:52,348 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:04:52,348 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:04:52,350 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:04:52,350 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:04:52,356 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:04:52,442 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:04:52,442 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:04:52,442 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:05:52,366 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:05:52,366 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:05:52,366 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:06:52,475 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:06:52,475 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:06:52,475 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:07:52,543 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:07:52,543 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:07:52,543 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:08:52,561 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:08:52,561 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:08:52,563 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:09:52,566 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:09:52,566 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:09:52,566 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:10:52,677 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:10:52,677 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:10:52,679 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:11:52,792 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:11:52,792 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:11:52,792 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:12:52,853 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:12:52,853 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:12:52,853 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:13:53,019 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:13:53,020 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:13:53,020 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:14:53,141 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:14:53,141 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:14:53,142 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:15:53,169 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:15:53,169 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:15:53,169 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:16:53,323 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:16:53,323 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:16:53,323 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:17:53,410 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:17:53,410 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 21:17:53,410 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:17:53,458 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:17:53,459 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.52320891891911647
      y: 0.0073016498008314822
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:17:53,831 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.52320891891911647
      y: 0.0073016498008314822
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:17:54,098 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 21:17:54,098 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:17:54,099 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:17:54,099 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:17:54,101 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:17:54,286 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:17:54,287 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:17:54,299 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:17:54,321 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:17:54,322 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:17:54,322 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 21:17:54,322 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:17:54,368 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:17:54,368 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 21:17:54,409 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 21:17:54,409 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 21:17:54,527 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 21:17:54,527 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 21:17:54,579 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 21:17:54,587 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 21:17:54,628 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 21:17:54,628 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 21:17:54,628 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:17:54,628 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:17:54,729 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:17:54,729 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 21:17:54,775 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 21:17:54,789 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 21:17:54,852 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 21:17:54,861 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 21:17:55,011 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:17:55,012 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:17:55,012 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:17:55,013 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:17:55,055 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:17:55,055 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:17:55,055 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:17:55,055 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:17:55,055 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 21:17:55,055 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:17:55,055 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 21:17:55,055 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 21:17:55,055 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 21:17:55,056 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 21:17:55,057 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 21:17:55,414 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 21:17:55,414 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:17:55,414 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 21:17:56,372 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:17:56,373 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:17:56,373 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:17:57,152 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 21:17:57,152 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:17:57,174 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:17:57,174 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:17:57,175 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:17:57,175 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 21:17:57,179 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:17:57,217 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:17:57,253 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:17:57,264 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:17:57,264 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 21:17:57,264 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:20:05,585 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0017.ibw (each dataset is a channel).
2025-07-24 21:20:05,606 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 21:20:05,607 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:20:05,607 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:20:05,607 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:20:05,607 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:20:05,819 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 144, R: 144
2025-07-24 21:20:05,819 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 144, R: 144
2025-07-24 21:20:05,821 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0037185371681467128
2025-07-24 21:20:05,851 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.84332029e-07 -2.01941908e-08] m.
2025-07-24 21:20:05,852 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 2.99259432e-11 -6.35250653e-12] m / s.
2025-07-24 21:20:05,853 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 21:20:05,856 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:20:05,856 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:20:05,897 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:20:06,101 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:20:06,101 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:20:06,112 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:20:06,121 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:20:06,122 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:20:06,178 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:20:06,203 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:20:06,203 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:20:06,361 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 21:20:06,386 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:20:06,458 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:20:06,607 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 21:20:06,608 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:20:06,654 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:20:06,855 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:20:06,856 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:20:06,872 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:20:06,872 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:20:06,872 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 21:20:06,872 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:20:06,889 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:20:06,889 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:20:06,889 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:20:06,897 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:20:06,919 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:20:06,919 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:20:06,919 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:20:06,919 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 21:20:06,919 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:20:06,919 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:20:06,919 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:21:07,040 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:21:07,040 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:21:07,042 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:22:07,097 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:22:07,097 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:22:07,098 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:23:07,226 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:23:07,226 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:23:07,227 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:24:07,243 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:24:07,244 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:24:07,244 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:25:07,325 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:25:07,325 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:25:07,326 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:26:07,481 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:26:07,481 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:26:07,481 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:27:07,554 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:27:07,556 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:27:07,557 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:28:07,684 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:28:07,684 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:28:07,686 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:29:07,780 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:29:07,780 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:29:07,781 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:30:07,865 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:30:07,865 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:30:07,865 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:31:07,964 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:31:07,964 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:31:07,965 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:32:08,073 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:32:08,073 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:32:08,073 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:33:08,225 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:33:08,225 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 21:33:08,227 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:33:08,228 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:33:08,230 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46090934773930708
      y: 0.025166222370186793
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:33:08,538 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46090934773930708
      y: 0.025166222370186793
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:33:08,802 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 21:33:08,803 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:33:08,804 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:33:08,805 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:33:08,806 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:33:08,991 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:33:08,992 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:33:08,995 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:33:08,995 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 21:33:08,996 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:33:09,011 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:33:09,051 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:33:09,072 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:33:09,073 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 21:33:09,114 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 21:33:09,114 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 21:33:09,231 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 21:33:09,231 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 21:33:09,275 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 21:33:09,331 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 21:33:09,332 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 21:33:09,332 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 21:33:09,332 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:33:09,332 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:33:09,433 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:33:09,433 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 21:33:09,481 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 21:33:09,481 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 21:33:09,494 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 21:33:09,540 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 21:33:09,730 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:33:09,731 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:33:09,756 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:33:09,761 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:33:09,761 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:33:09,761 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:33:09,761 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
ion.
2025-07-24 21:33:09,761 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 21:33:09,761 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:33:09,761 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 21:33:09,761 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 21:33:09,762 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 21:33:09,762 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 21:33:09,809 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:33:10,123 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 21:33:10,124 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:33:10,124 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 21:33:11,074 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:33:11,075 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:33:11,075 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:33:11,808 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 21:33:11,809 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:33:11,869 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:33:11,869 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:33:11,869 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:33:11,869 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 21:33:11,871 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:33:11,875 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:33:11,910 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:33:11,916 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:33:11,954 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:33:11,954 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 21:35:21,001 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0018.ibw (each dataset is a channel).
2025-07-24 21:35:21,073 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 21:35:21,074 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:35:21,074 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:35:21,075 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:35:21,075 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:35:21,098 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 144, R: 140
2025-07-24 21:35:21,099 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 144, R: 140
2025-07-24 21:35:21,100 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004250563219383766
2025-07-24 21:35:21,128 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.72998514e-07 -1.50686779e-08] m.
2025-07-24 21:35:21,129 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [1.23904555e-11 5.60350784e-12] m / s.
2025-07-24 21:35:21,129 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 21:35:21,179 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:35:21,195 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:35:21,203 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:35:21,401 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:35:21,443 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:35:21,459 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:35:21,482 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:35:21,562 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:35:21,562 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:35:21,647 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 21:35:21,649 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:35:21,662 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:35:21,662 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:35:21,662 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:35:21,707 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:35:21,723 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:35:21,883 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 21:35:21,885 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:35:21,934 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:35:21,973 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:35:22,113 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:35:22,114 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:35:22,115 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:35:22,143 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:35:22,143 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:35:22,143 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 21:35:22,143 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:35:22,143 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:35:22,143 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:35:22,174 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:35:22,174 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:35:22,174 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 21:35:22,174 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:35:22,214 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:35:22,348 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:35:22,348 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:36:22,254 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:36:22,254 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:36:22,254 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:37:22,290 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:37:22,290 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:37:22,291 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:38:22,398 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:38:22,398 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:38:22,398 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:39:22,550 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:39:22,550 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:39:22,551 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:40:22,561 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:40:22,561 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:40:22,562 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:41:22,649 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:41:22,649 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:41:22,650 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:42:22,695 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:42:22,695 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:42:22,695 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:43:22,851 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:43:22,851 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:43:22,852 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:44:22,885 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:44:22,885 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:44:22,885 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:45:22,911 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:45:22,911 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:45:22,912 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:46:22,935 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:46:22,935 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:46:22,935 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:47:22,939 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:47:22,939 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:47:22,940 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:48:22,975 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:48:22,975 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 21:48:22,975 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:48:23,207 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:48:23,210 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46329713525270455
      y: 0.010681288751335638
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:48:23,613 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46329713525270455
      y: 0.010681288751335638
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 21:48:23,880 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 21:48:23,881 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:48:23,882 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:48:23,882 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:48:23,883 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:48:24,065 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:48:24,065 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:48:24,087 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:48:24,087 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:48:24,087 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 21:48:24,087 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:48:24,141 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:48:24,149 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:48:24,149 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 21:48:24,189 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 21:48:24,189 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 21:48:24,307 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 21:48:24,307 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 21:48:24,307 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 21:48:24,352 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 21:48:24,409 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 21:48:24,409 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 21:48:24,410 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:48:24,410 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:48:24,511 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:48:24,511 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 21:48:24,557 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 21:48:24,571 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 21:48:24,580 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 21:48:24,617 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 21:48:24,806 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:48:24,807 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:48:24,820 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:48:24,820 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:48:24,820 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 21:48:24,820 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:48:24,836 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:48:24,836 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:48:24,836 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 21:48:24,836 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 21:48:24,836 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 21:48:24,836 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 21:48:24,837 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 21:48:24,859 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:48:24,882 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:48:25,197 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 21:48:25,198 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:48:25,198 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 21:48:26,150 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 21:48:26,150 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 21:48:26,151 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 21:48:26,935 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 21:48:26,936 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:48:26,936 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:48:26,937 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:48:26,971 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:48:26,971 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 21:48:26,971 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:48:27,018 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:48:27,026 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:48:27,033 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:48:27,033 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 21:48:27,037 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:50:35,730 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0019.ibw (each dataset is a channel).
2025-07-24 21:50:35,748 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 21:50:35,748 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:50:35,748 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:50:35,748 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:50:35,749 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 21:50:35,772 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 146, R: 142
2025-07-24 21:50:35,772 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 146, R: 142
2025-07-24 21:50:35,775 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0034150863632530283
2025-07-24 21:50:35,803 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.76829642e-07 -1.13854610e-08] m.
2025-07-24 21:50:35,805 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-4.18638861e-12  4.02476078e-12] m / s.
2025-07-24 21:50:35,806 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 21:50:35,806 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:50:35,814 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:50:35,893 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:50:36,074 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:50:36,080 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:50:36,088 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:50:36,157 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:50:36,229 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 21:50:36,230 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 21:50:36,318 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 21:50:36,331 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 21:50:36,332 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 21:50:36,332 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:50:36,345 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:50:36,369 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:50:36,409 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 21:50:36,554 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 21:50:36,555 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:50:36,611 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:50:36,651 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:50:36,800 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:50:36,800 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 21:50:36,800 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 21:50:36,800 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 21:50:36,800 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 21:50:36,801 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 21:50:36,801 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 21:50:36,814 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 21:50:36,862 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 21:50:36,862 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 21:50:36,862 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 21:50:36,862 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:50:36,862 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:50:36,863 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:50:37,018 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 21:50:37,019 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 21:51:36,870 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:51:36,871 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:51:36,871 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:52:36,980 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:52:36,980 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:52:36,982 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:53:37,069 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:53:37,070 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:53:37,070 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:54:37,128 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:54:37,128 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:54:37,129 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:55:37,227 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:55:37,227 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:55:37,229 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:56:37,362 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:56:37,362 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:56:37,362 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:57:37,432 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:57:37,432 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:57:37,432 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:58:37,465 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:58:37,466 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:58:37,466 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 21:59:37,572 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 21:59:37,572 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 21:59:37,572 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:00:37,737 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:00:37,737 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:00:37,737 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:01:37,879 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:01:37,880 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:01:37,880 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:02:37,906 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:02:37,907 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:02:37,907 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:03:38,009 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:03:38,010 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 22:03:38,010 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:03:38,117 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:03:38,118 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48010650099135344
      y: 0.0082351151583038348
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:03:38,257 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48010650099135344
      y: 0.0082351151583038348
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:03:38,524 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 22:03:38,525 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:03:38,525 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:03:38,526 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:03:38,526 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:03:38,712 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:03:38,713 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:03:38,789 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:03:38,794 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:03:38,795 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 22:03:38,795 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:03:38,795 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:03:38,795 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:03:38,795 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 22:03:38,838 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 22:03:38,838 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 22:03:38,976 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 22:03:39,055 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 22:03:39,056 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 22:03:39,056 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:03:39,056 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:03:39,062 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 22:03:39,062 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 22:03:39,071 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 22:03:39,157 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:03:39,157 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 22:03:39,229 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 22:03:39,230 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 22:03:39,328 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 22:03:39,328 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 22:03:39,496 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:03:39,497 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:03:39,509 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:03:39,579 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:03:39,579 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:03:39,579 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 22:03:39,579 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:03:39,595 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:03:39,595 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:03:39,595 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:03:39,595 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 22:03:39,596 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 22:03:39,596 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 22:03:39,822 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 22:03:39,823 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 22:03:39,831 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 22:03:39,831 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:03:39,831 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 22:03:40,861 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:03:40,861 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:03:40,862 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:03:41,604 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 22:03:41,604 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:03:41,680 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:03:41,680 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:03:41,683 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:03:41,683 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 22:03:41,697 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:03:41,706 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:03:41,720 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:03:41,720 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 22:03:41,720 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:03:41,735 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:05:50,417 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0020.ibw (each dataset is a channel).
2025-07-24 22:05:50,436 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 22:05:50,436 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:05:50,436 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:05:50,436 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:05:50,436 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:05:50,648 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 134, R: 137
2025-07-24 22:05:50,648 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 134, R: 137
2025-07-24 22:05:50,651 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003853883000410205
2025-07-24 22:05:50,680 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.80658866e-07 -2.34521073e-08] m.
2025-07-24 22:05:50,680 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-4.18638861e-12 -1.31921444e-11] m / s.
2025-07-24 22:05:50,681 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 22:05:50,712 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:05:50,733 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:05:50,945 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:05:50,965 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:05:50,965 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:05:50,986 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:05:50,986 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:05:50,996 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:05:51,066 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:05:51,066 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:05:51,176 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 22:05:51,252 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:05:51,252 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:05:51,277 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:05:51,414 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 22:05:51,416 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:05:51,416 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:05:51,722 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:05:51,722 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:05:51,723 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:05:51,723 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:05:51,723 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:05:51,724 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:05:51,724 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 22:05:51,724 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:05:51,725 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:05:51,725 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:05:51,737 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:05:51,737 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:05:51,737 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 22:05:51,737 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:05:51,753 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:05:51,753 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:05:51,753 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:06:51,855 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:06:51,856 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:06:51,856 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:07:51,999 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:07:51,999 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:07:52,000 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:08:52,011 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:08:52,011 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:08:52,012 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:09:52,178 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:09:52,178 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:09:52,178 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:10:52,294 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:10:52,294 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:10:52,295 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:11:52,325 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:11:52,326 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:11:52,326 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:12:52,351 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:12:52,351 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:12:52,351 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:13:52,479 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:13:52,479 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:13:52,479 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:14:52,547 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:14:52,547 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:14:52,549 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:15:52,693 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:15:52,693 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:15:52,693 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:16:52,819 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:16:52,820 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:16:52,820 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:17:52,852 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:17:52,852 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:17:52,852 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:18:52,949 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:18:52,949 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 22:18:52,949 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:18:53,167 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:18:53,168 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48393725581807245
      y: 0.033782966480497223
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:18:53,526 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48393725581807245
      y: 0.033782966480497223
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:18:53,808 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 22:18:53,808 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:18:53,810 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:18:53,810 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:18:53,811 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:18:53,992 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:18:53,994 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:18:53,995 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:18:54,031 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:18:54,031 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 22:18:54,031 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:18:54,031 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:18:54,063 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:18:54,063 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 22:18:54,122 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 22:18:54,122 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 22:18:54,241 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 22:18:54,276 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 22:18:54,284 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 22:18:54,330 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 22:18:54,339 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 22:18:54,340 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 22:18:54,340 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:18:54,340 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:18:54,441 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:18:54,442 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 22:18:54,809 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 22:18:54,862 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 22:18:54,902 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 22:18:54,909 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 22:18:55,054 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:18:55,056 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:18:55,057 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:18:55,057 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:18:55,057 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:18:55,057 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 22:18:55,057 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 22:18:55,058 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 22:18:55,059 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 22:18:55,060 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 22:18:55,080 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:18:55,080 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:18:55,080 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 22:18:55,080 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:18:55,127 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:18:55,301 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 22:18:55,301 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:18:55,302 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 22:18:56,264 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:18:56,265 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:18:56,265 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:18:56,980 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 22:18:56,982 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:18:57,070 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:18:57,071 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:18:57,071 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:18:57,072 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 22:18:57,072 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:18:57,076 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:18:57,082 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:18:57,129 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:18:57,144 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:18:57,144 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 22:21:06,176 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0021.ibw (each dataset is a channel).
2025-07-24 22:21:06,194 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 22:21:06,194 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:21:06,194 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:21:06,195 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:21:06,195 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:21:06,253 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 127, R: 140
2025-07-24 22:21:06,253 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 127, R: 140
2025-07-24 22:21:06,254 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0038576261722651235
2025-07-24 22:21:06,283 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.89740387e-07 -1.90301245e-08] m.
2025-07-24 22:21:06,284 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-9.92093315e-12  4.83070988e-12] m / s.
2025-07-24 22:21:06,285 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 22:21:06,285 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:21:06,306 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:21:06,386 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:21:06,545 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:21:06,546 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:21:06,565 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:21:06,574 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:21:06,677 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:21:06,677 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:21:06,778 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:21:06,779 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:21:06,794 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 22:21:06,808 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:21:06,839 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:21:06,848 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:21:07,043 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 22:21:07,074 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:21:07,105 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:21:07,128 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:21:07,299 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:21:07,299 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:21:07,336 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:21:07,368 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:21:07,368 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:21:07,368 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:21:07,368 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:21:07,368 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 22:21:07,368 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 22:21:07,369 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:21:07,369 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:21:07,369 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:21:07,369 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:21:07,407 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:21:07,462 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:21:07,462 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:21:07,462 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:22:07,424 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:22:07,424 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:22:07,424 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:23:07,442 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:23:07,442 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:23:07,444 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:24:07,536 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:24:07,536 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:24:07,537 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:25:07,572 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:25:07,573 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:25:07,573 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:26:07,579 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:26:07,579 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:26:07,580 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:27:07,736 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:27:07,736 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:27:07,736 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:28:07,776 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:28:07,776 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:28:07,776 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:29:07,849 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:29:07,849 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:29:07,849 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:30:07,939 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:30:07,939 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:30:07,940 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:31:08,010 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:31:08,010 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:31:08,011 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:32:08,108 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:32:08,108 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:32:08,109 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:33:08,225 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:33:08,225 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:33:08,226 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:34:08,376 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:34:08,376 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 22:34:08,377 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:34:08,613 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:34:08,615 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4975100996144447
      y: 0.015246889154340852
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:34:08,972 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4975100996144447
      y: 0.015246889154340852
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:34:09,240 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 22:34:09,240 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:34:09,240 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:34:09,241 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:34:09,242 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:34:09,427 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:34:09,427 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:34:09,464 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-24 22:34:09,464 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 22:34:09,464 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:34:09,510 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:34:09,510 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 22:34:09,533 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:34:09,549 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 22:34:09,549 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 22:34:09,670 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 22:34:09,671 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 22:34:09,671 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 22:34:09,728 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 22:34:09,767 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 22:34:09,768 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 22:34:09,768 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:34:09,768 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:34:09,869 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:34:09,869 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 22:34:09,918 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 22:34:09,930 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 22:34:09,954 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 22:34:09,992 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 22:34:10,165 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:34:10,166 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:34:10,194 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:34:10,195 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:34:10,195 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:34:10,195 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 22:34:10,195 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 22:34:10,195 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:34:10,195 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 22:34:10,195 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 22:34:10,196 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 22:34:10,196 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 22:34:10,234 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:34:10,256 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:34:10,556 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 22:34:10,557 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:34:10,557 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 22:34:11,959 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:34:11,960 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:34:11,960 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:34:12,712 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 22:34:12,713 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 22:34:12,752 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:34:12,752 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 22:34:12,753 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:34:12,814 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:36:21,888 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0022.ibw (each dataset is a channel).
2025-07-24 22:36:21,908 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 22:36:21,908 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:36:21,908 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:36:21,909 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:36:21,909 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:36:21,969 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 133, R: 143
2025-07-24 22:36:21,970 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 133, R: 143
2025-07-24 22:36:21,971 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004079800006200678
2025-07-24 22:36:21,999 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.95531547e-07  1.79901373e-08] m.
2025-07-24 22:36:21,999 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [1.02880636e-10 4.04279264e-11] m / s.
2025-07-24 22:36:22,000 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 22:36:22,001 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:36:22,001 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:36:22,065 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:36:22,255 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:36:22,256 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:36:22,279 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:36:22,332 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:36:22,388 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:36:22,389 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:36:22,490 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:36:22,492 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:36:22,493 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 22:36:22,494 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:36:22,520 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:36:22,560 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:36:22,739 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 22:36:22,754 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:36:22,785 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:36:22,842 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:36:22,976 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:36:22,976 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:36:22,976 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:36:22,977 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:36:22,977 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 22:36:22,977 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:36:22,977 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:36:23,021 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:36:23,021 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:36:23,021 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 22:36:23,021 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:36:23,021 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:36:23,021 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:36:23,050 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:36:23,177 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:36:23,178 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:36:23,179 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:37:23,176 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:37:23,176 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:37:23,176 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:38:23,263 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:38:23,263 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:38:23,263 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:39:23,320 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:39:23,321 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:39:23,321 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:40:23,378 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:40:23,379 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:40:23,379 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:41:23,484 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:41:23,484 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:41:23,484 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:42:23,609 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:42:23,609 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:42:23,609 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:43:23,730 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:43:23,730 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:43:23,730 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:44:23,764 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:44:23,764 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:44:23,766 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:45:23,805 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:45:23,805 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:45:23,805 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:46:23,838 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:46:23,838 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:46:23,839 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:47:23,921 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:47:23,921 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:47:23,922 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:48:23,942 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:48:23,942 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:48:23,942 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:49:24,009 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:49:24,009 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 22:49:24,010 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:49:24,056 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:49:24,058 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.31498671813364165
      y: -0.049640995247104983
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:49:24,684 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.31498671813364165
      y: -0.049640995247104983
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 22:49:24,967 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 22:49:24,967 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:49:24,969 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:49:24,970 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:49:24,971 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:49:25,151 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:49:25,152 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:49:25,152 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:49:25,154 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 22:49:25,154 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:49:25,154 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:49:25,215 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:49:25,237 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:49:25,237 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 22:49:25,278 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 22:49:25,278 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 22:49:25,395 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 22:49:25,396 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 22:49:25,408 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 22:49:25,494 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 22:49:25,494 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 22:49:25,494 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 22:49:25,494 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:49:25,496 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:49:25,596 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:49:25,596 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 22:49:25,627 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 22:49:25,628 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 22:49:25,659 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 22:49:25,674 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 22:49:25,862 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:49:25,862 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:49:25,876 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:49:25,876 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:49:25,876 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 22:49:25,876 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:49:25,900 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:49:25,922 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:49:25,922 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:49:25,922 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 22:49:25,923 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 22:49:25,923 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 22:49:25,923 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 22:49:25,924 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 22:49:25,938 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:49:26,314 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 22:49:26,315 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:49:26,315 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 22:49:27,274 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 22:49:27,275 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 22:49:27,275 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 22:49:28,066 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 22:49:28,067 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:49:28,074 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:49:28,075 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:49:28,075 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:49:28,075 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:49:28,076 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 22:49:28,081 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:49:28,119 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:49:28,119 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 22:49:28,119 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:49:28,168 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:51:37,150 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0023.ibw (each dataset is a channel).
2025-07-24 22:51:37,227 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 22:51:37,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:51:37,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:51:37,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:51:37,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 22:51:37,331 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 128, R: 140
2025-07-24 22:51:37,331 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 128, R: 140
2025-07-24 22:51:37,333 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0042900637834148185
2025-07-24 22:51:37,360 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.95852558e-07  4.04892615e-08] m.
2025-07-24 22:51:37,360 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-3.50714742e-13  2.45810085e-11] m / s.
2025-07-24 22:51:37,362 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 22:51:37,363 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:51:37,368 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:51:37,406 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:51:37,629 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:51:37,640 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:51:37,649 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:51:37,671 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:51:37,712 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 22:51:37,713 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 22:51:37,814 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 22:51:37,814 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 22:51:37,875 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 22:51:37,906 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:51:37,932 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:51:37,937 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:51:38,111 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 22:51:38,173 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:51:38,204 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:51:38,213 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:51:38,358 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:51:38,358 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 22:51:38,359 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 22:51:38,359 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 22:51:38,359 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 22:51:38,359 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 22:51:38,361 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 22:51:38,361 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 22:51:38,438 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 22:51:38,438 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 22:51:38,438 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 22:51:38,438 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:51:38,438 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:51:38,438 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:51:38,517 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 22:51:38,517 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 22:51:38,517 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 22:52:38,554 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:52:38,554 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:52:38,554 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:53:38,568 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:53:38,569 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:53:38,569 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:54:38,724 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:54:38,724 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:54:38,725 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:55:38,728 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:55:38,728 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:55:38,729 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:56:38,849 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:56:38,850 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:56:38,850 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:57:38,928 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:57:38,928 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:57:38,928 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:58:39,006 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:58:39,006 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:58:39,006 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 22:59:39,143 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 22:59:39,143 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 22:59:39,143 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:00:39,293 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:00:39,294 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:00:39,294 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:01:39,458 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:01:39,458 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:01:39,458 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:02:39,560 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:02:39,560 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:02:39,561 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:03:39,656 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:03:39,656 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:03:39,656 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:04:39,676 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:04:39,676 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 23:04:39,678 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:04:39,739 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:04:39,740 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.39612726312928503
      y: -0.059742912242256696
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:04:39,740 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.39612726312928503
      y: -0.059742912242256696
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:04:40,006 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 23:04:40,007 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:04:40,007 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:04:40,008 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:04:40,009 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:04:40,188 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:04:40,189 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:04:40,189 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:04:40,189 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:04:40,190 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 23:04:40,190 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:04:40,275 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:04:40,275 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 23:04:40,283 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:04:40,316 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 23:04:40,316 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 23:04:40,436 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 23:04:40,436 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 23:04:40,436 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 23:04:40,461 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 23:04:40,532 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 23:04:40,532 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 23:04:40,533 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:04:40,533 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:04:40,634 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:04:40,634 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 23:04:40,682 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 23:04:40,695 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 23:04:40,719 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 23:04:40,726 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 23:04:41,139 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:04:41,139 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:04:41,139 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:04:41,141 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:04:41,141 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:04:41,141 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 23:04:41,141 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:04:41,141 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:04:41,141 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 23:04:41,142 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 23:04:41,142 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 23:04:41,142 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 23:04:41,142 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 23:04:41,146 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:04:41,172 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:04:41,630 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 23:04:41,630 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:04:41,632 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 23:04:42,603 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:04:42,604 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:04:42,604 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:04:43,334 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 23:04:43,334 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:04:43,401 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:04:43,401 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:04:43,402 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:04:43,402 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:04:43,403 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 23:04:43,403 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 23:04:43,403 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:04:43,435 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:04:43,502 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:06:52,450 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0024.ibw (each dataset is a channel).
2025-07-24 23:06:52,469 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 23:06:52,471 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:06:52,471 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:06:52,471 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:06:52,471 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:06:52,536 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 134, R: 141
2025-07-24 23:06:52,536 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 134, R: 141
2025-07-24 23:06:52,538 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0035693849565507077
2025-07-24 23:06:52,566 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.96173568e-07  4.81758206e-08] m.
2025-07-24 23:06:52,567 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-3.50714742e-13  8.39783269e-12] m / s.
2025-07-24 23:06:52,567 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 23:06:52,569 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:06:52,569 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:06:52,569 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:06:52,819 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:06:52,830 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:06:52,830 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:06:52,853 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:06:52,947 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:06:52,948 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:06:53,049 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:06:53,049 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:06:53,067 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 23:06:53,110 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace

2025-07-24 23:06:53,134 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:06:53,313 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 23:06:53,374 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:06:53,374 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:06:53,414 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:06:53,563 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:06:53,565 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:06:53,565 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:06:53,566 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:06:53,566 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:06:53,566 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 23:06:53,567 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:06:53,638 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:06:53,638 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:06:53,638 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:06:53,638 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 23:06:53,638 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:06:53,638 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:06:53,638 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:06:53,748 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:06:53,748 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:06:53,750 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:07:53,793 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:07:53,794 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:07:53,794 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:08:53,924 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:08:53,924 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:08:53,926 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:09:53,960 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:09:53,961 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:09:53,961 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:10:54,091 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:10:54,091 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:10:54,092 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:11:54,136 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:11:54,136 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:11:54,136 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:12:54,216 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:12:54,216 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:12:54,217 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:13:54,301 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:13:54,301 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:13:54,301 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:14:54,401 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:14:54,401 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:14:54,403 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:15:54,484 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:15:54,485 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:15:54,486 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:16:54,586 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:16:54,587 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:16:54,587 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:17:54,638 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:17:54,638 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:17:54,638 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:18:54,790 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:18:54,790 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:18:54,790 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:19:54,844 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:19:54,844 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 23:19:54,844 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:19:55,030 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:19:55,032 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.3964482693256608
      y: -0.054753524899102408
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:19:55,373 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.3964482693256608
      y: -0.054753524899102408
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:19:55,654 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 23:19:55,654 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:19:55,655 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:19:55,655 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:19:55,655 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:19:55,839 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:19:55,839 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:19:55,839 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:19:55,864 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:19:55,864 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 23:19:55,864 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:19:55,887 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:19:55,910 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:19:55,911 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 23:19:55,967 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 23:19:55,967 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 23:19:56,081 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 23:19:56,097 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 23:19:56,168 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 23:19:56,174 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 23:19:56,184 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 23:19:56,184 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 23:19:56,184 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:19:56,185 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:19:56,285 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:19:56,285 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 23:19:56,317 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 23:19:56,317 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 23:19:56,317 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 23:19:56,361 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 23:19:56,567 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:19:56,568 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:19:56,592 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:19:56,592 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:19:56,592 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 23:19:56,592 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 23:19:56,592 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 23:19:56,592 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 23:19:56,594 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 23:19:56,601 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:19:56,607 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:19:56,607 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:19:56,607 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 23:19:56,607 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:19:56,624 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:19:56,984 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 23:19:56,985 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:19:56,985 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 23:19:57,948 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:19:57,948 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:19:57,949 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:19:58,693 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 23:19:58,693 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:19:58,748 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:19:58,748 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:19:58,748 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:19:58,748 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:19:58,749 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 23:19:58,749 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:19:58,749 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:19:58,749 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 23:19:58,770 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:19:58,795 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:22:07,858 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0025.ibw (each dataset is a channel).
2025-07-24 23:22:07,876 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 23:22:07,876 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:22:07,878 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:22:07,878 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:22:07,878 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:22:08,049 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 141
2025-07-24 23:22:08,049 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 141
2025-07-24 23:22:08,051 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004490846638680244
2025-07-24 23:22:08,147 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.70860297e-07  3.27974344e-08] m.
2025-07-24 23:22:08,148 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-8.15940939e-11 -1.68006485e-11] m / s.
2025-07-24 23:22:08,149 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 23:22:08,186 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:22:08,193 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:22:08,193 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:22:08,359 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:22:08,361 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:22:08,397 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:22:08,459 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:22:08,459 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:22:08,462 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:22:08,463 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:22:08,466 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:22:08,632 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 23:22:08,633 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:22:08,724 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:22:08,724 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:22:08,871 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 23:22:08,872 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:22:08,873 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:22:08,919 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:22:09,114 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:22:09,115 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:22:09,115 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:22:09,115 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:22:09,116 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 23:22:09,116 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:22:09,128 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:22:09,128 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:22:09,128 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:22:09,128 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 23:22:09,129 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:22:09,129 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:22:09,129 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:22:09,146 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:22:09,146 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:22:09,146 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:22:09,201 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:23:09,247 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:23:09,247 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:23:09,247 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:24:09,298 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:24:09,298 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:24:09,298 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:25:09,430 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:25:09,430 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:25:09,430 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:26:09,535 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:26:09,536 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:26:09,536 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:27:09,624 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:27:09,624 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:27:09,624 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:28:09,626 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:28:09,627 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:28:09,627 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:29:09,663 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:29:09,663 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:29:09,663 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:30:09,705 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:30:09,705 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:30:09,705 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:31:09,770 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:31:09,770 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:31:09,772 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:32:09,842 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:32:09,842 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:32:09,843 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:33:09,906 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:33:09,906 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:33:09,906 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:34:09,984 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:34:09,984 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:34:09,986 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:35:10,102 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:35:10,102 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 23:35:10,103 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:35:10,118 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:35:10,118 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.53474884900150876
      y: -0.019642449027744809
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:35:10,726 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.53474884900150876
      y: -0.019642449027744809
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:35:10,992 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 23:35:10,992 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:35:10,992 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:35:10,992 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:35:10,994 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:35:11,176 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:35:11,177 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:35:11,178 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:35:11,217 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:35:11,217 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 23:35:11,217 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:35:11,232 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:35:11,264 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:35:11,264 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 23:35:11,303 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 23:35:11,304 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 23:35:11,423 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 23:35:11,425 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 23:35:11,459 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 23:35:11,497 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 23:35:11,522 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 23:35:11,523 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 23:35:11,523 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:35:11,523 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:35:11,625 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:35:11,625 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 23:35:11,674 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 23:35:11,699 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 23:35:11,741 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 23:35:11,763 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 23:35:11,921 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:35:11,922 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:35:11,922 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:35:11,966 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:35:11,966 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:35:11,966 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 23:35:11,966 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 23:35:11,966 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 23:35:11,967 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 23:35:11,967 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 23:35:11,997 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:35:11,997 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:35:11,997 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 23:35:11,997 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:35:12,021 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:35:12,309 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 23:35:12,310 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:35:12,310 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 23:35:13,274 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:35:13,275 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:35:13,275 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:35:14,077 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 23:35:14,077 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:35:14,078 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:35:14,079 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:35:14,079 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:35:14,080 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 23:35:14,080 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:35:14,113 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:35:14,160 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:35:14,160 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 23:35:14,179 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:35:14,186 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:37:22,528 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0026.ibw (each dataset is a channel).
2025-07-24 23:37:22,548 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 23:37:22,548 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:37:22,548 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:37:22,549 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:37:22,549 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:37:22,572 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 133, R: 135
2025-07-24 23:37:22,572 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 133, R: 135
2025-07-24 23:37:22,574 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003999176030937703
2025-07-24 23:37:22,602 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.66991503e-07  2.93702994e-08] m.
2025-07-24 23:37:22,602 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.05019259e-10 -3.74399936e-12] m / s.
2025-07-24 23:37:22,603 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 23:37:22,614 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:37:22,622 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:37:22,622 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:37:22,880 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:37:22,886 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:37:22,886 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:37:22,894 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:37:23,035 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:37:23,035 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:37:23,123 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 23:37:23,136 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:37:23,136 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:37:23,136 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:37:23,149 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace

2025-07-24 23:37:23,173 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:37:23,371 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 23:37:23,415 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:37:23,456 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:37:23,626 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:37:23,626 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
eMsg
2025-07-24 23:37:23,628 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:37:23,628 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:37:23,628 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 23:37:23,629 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:37:23,683 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:37:23,683 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:37:23,683 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:37:23,683 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 23:37:23,683 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:37:23,683 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:37:23,683 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:37:23,824 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:37:23,825 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:38:23,724 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:38:23,725 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:38:23,725 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:39:23,808 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:39:23,809 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:39:23,809 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:40:23,974 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:40:23,974 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:40:23,975 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:41:24,052 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:41:24,052 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:41:24,054 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:42:24,205 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:42:24,205 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:42:24,205 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:43:24,361 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:43:24,361 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:43:24,362 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:44:24,499 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:44:24,499 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:44:24,500 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:45:24,578 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:45:24,578 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:45:24,578 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:46:24,664 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:46:24,664 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:46:24,664 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:47:24,742 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:47:24,742 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:47:24,743 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:48:24,812 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:48:24,812 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:48:24,812 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:49:24,905 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:49:24,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:49:24,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:50:25,067 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:50:25,068 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-24 23:50:25,068 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:50:25,381 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:50:25,383 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.6492112185447898
      y: -0.026439117370885709
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:50:25,846 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.6492112185447898
      y: -0.026439117370885709
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-24 23:50:26,112 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-24 23:50:26,113 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:50:26,113 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:50:26,114 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:50:26,114 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:50:26,297 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:50:26,300 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:50:26,306 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:50:26,307 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-24 23:50:26,307 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:50:26,368 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:50:26,384 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:50:26,384 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-24 23:50:26,392 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:50:26,424 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-24 23:50:26,424 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-24 23:50:26,545 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-24 23:50:26,545 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-24 23:50:26,546 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-24 23:50:26,631 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-24 23:50:26,642 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-24 23:50:26,643 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-24 23:50:26,643 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:50:26,643 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:50:26,744 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:50:26,744 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-24 23:50:26,794 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-24 23:50:26,794 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-24 23:50:26,804 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-24 23:50:26,829 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-24 23:50:27,041 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:50:27,043 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:50:27,043 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:50:27,043 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:50:27,044 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-24 23:50:27,044 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:50:27,053 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:50:27,069 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:50:27,069 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:50:27,069 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-24 23:50:27,069 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-24 23:50:27,069 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-24 23:50:27,069 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-24 23:50:27,070 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-24 23:50:27,108 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:50:27,428 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-24 23:50:27,429 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:50:27,429 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-24 23:50:28,399 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-24 23:50:28,399 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-24 23:50:28,399 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-24 23:50:29,182 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-24 23:50:29,183 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:50:29,207 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:50:29,207 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:50:29,207 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:50:29,207 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:50:29,207 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-24 23:50:29,208 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:50:29,208 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-24 23:50:29,218 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:50:29,272 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:50:29,284 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:52:38,203 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0027.ibw (each dataset is a channel).
2025-07-24 23:52:38,277 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-24 23:52:38,277 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:52:38,277 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:52:38,277 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:52:38,277 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-24 23:52:38,390 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 133, R: 134
2025-07-24 23:52:38,390 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 133, R: 134
2025-07-24 23:52:38,392 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0034578525065156207
2025-07-24 23:52:38,420 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.68449141e-07  2.27626818e-08] m.
2025-07-24 23:52:38,420 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.59284374e-12 -7.22051751e-12] m / s.
2025-07-24 23:52:38,421 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-24 23:52:38,422 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:52:38,436 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:52:38,506 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:52:38,681 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:52:38,683 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:52:38,716 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:52:38,764 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-24 23:52:38,764 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-24 23:52:38,771 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:52:38,865 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-24 23:52:38,866 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-24 23:52:38,931 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-24 23:52:38,932 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:52:38,942 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:52:38,997 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:52:39,180 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-24 23:52:39,191 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:52:39,206 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:52:39,278 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:52:39,429 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:52:39,429 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-24 23:52:39,430 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-24 23:52:39,456 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-24 23:52:39,472 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-24 23:52:39,472 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-24 23:52:39,472 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-24 23:52:39,472 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-24 23:52:39,472 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-24 23:52:39,472 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-24 23:52:39,472 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-24 23:52:39,472 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:52:39,472 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:52:39,472 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:52:39,551 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-24 23:52:39,552 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-24 23:52:39,552 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-24 23:53:39,589 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:53:39,589 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:53:39,590 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:54:39,705 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:54:39,705 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:54:39,706 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:55:39,710 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:55:39,710 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:55:39,710 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:56:39,750 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:56:39,750 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:56:39,750 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:57:39,762 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:57:39,764 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:57:39,764 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:58:39,920 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:58:39,920 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:58:39,921 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-24 23:59:40,056 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-24 23:59:40,056 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-24 23:59:40,056 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:00:40,199 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:00:40,199 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:00:40,201 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:01:40,322 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:01:40,322 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:01:40,322 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:02:40,346 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:02:40,346 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:02:40,347 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:03:40,476 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:03:40,476 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:03:40,477 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:04:40,505 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:04:40,505 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:04:40,506 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:05:40,565 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:05:40,565 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 00:05:40,566 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:05:40,660 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:05:40,662 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5696964386694231
      y: -0.017108559315139226
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:05:40,705 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5696964386694231
      y: -0.017108559315139226
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:05:40,987 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 00:05:40,989 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:05:40,990 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:05:40,990 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:05:40,992 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:05:41,178 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:05:41,178 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:05:41,179 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:05:41,179 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 00:05:41,179 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:05:41,213 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:05:41,239 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:05:41,260 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:05:41,260 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 00:05:41,303 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 00:05:41,303 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 00:05:41,421 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 00:05:41,422 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 00:05:41,479 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 00:05:41,520 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 00:05:41,521 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 00:05:41,521 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 00:05:41,521 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:05:41,521 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:05:41,622 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:05:41,622 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 00:05:41,671 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 00:05:41,671 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 00:05:41,683 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 00:05:41,746 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 00:05:41,925 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:05:41,927 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:05:41,942 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:05:41,948 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:05:41,948 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:05:41,948 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 00:05:41,948 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 00:05:41,948 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 00:05:41,949 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 00:05:41,949 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 00:05:41,966 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:05:41,966 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:05:41,966 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 00:05:41,966 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:05:42,011 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:05:42,311 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 00:05:42,312 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:05:42,312 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 00:05:43,261 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:05:43,261 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:05:43,262 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:05:43,955 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 00:05:43,955 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:05:44,058 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:05:44,058 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:05:44,058 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:05:44,060 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 00:05:44,060 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:05:44,060 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:05:44,069 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:05:44,109 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:05:44,146 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:05:44,146 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 00:07:53,423 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0028.ibw (each dataset is a channel).
2025-07-25 00:07:53,443 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 00:07:53,444 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:07:53,444 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:07:53,444 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:07:53,444 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:07:53,467 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 127, R: 138
2025-07-25 00:07:53,468 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 127, R: 138
2025-07-25 00:07:53,469 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0026169117974466243
2025-07-25 00:07:53,497 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.35061919e-07  1.79655375e-08] m.
2025-07-25 00:07:53,497 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 3.64860649e-11 -5.24239238e-12] m / s.
2025-07-25 00:07:53,498 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 00:07:53,500 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:07:53,584 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:07:53,585 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:07:53,759 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:07:53,782 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:07:53,850 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:07:53,850 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:07:53,924 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:07:53,925 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:07:54,011 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 00:07:54,012 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:07:54,012 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:07:54,025 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:07:54,025 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:07:54,025 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:07:54,062 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:07:54,257 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 00:07:54,270 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:07:54,270 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:07:54,342 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:07:54,494 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:07:54,495 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:07:54,495 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:07:54,520 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:07:54,520 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:07:54,520 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 00:07:54,520 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:07:54,536 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:07:54,536 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:07:54,536 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:07:54,536 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 00:07:54,536 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:07:54,536 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:07:54,536 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:07:54,708 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:07:54,709 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:08:54,575 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:08:54,576 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:08:54,576 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:09:54,690 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:09:54,690 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:09:54,690 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:10:54,755 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:10:54,755 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:10:54,755 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:11:54,886 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:11:54,886 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:11:54,886 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:12:54,961 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:12:54,961 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:12:54,963 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:13:55,131 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:13:55,131 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:13:55,132 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:14:55,231 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:14:55,231 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:14:55,231 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:15:55,239 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:15:55,239 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:15:55,239 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:16:55,322 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:16:55,322 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:16:55,324 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:17:55,402 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:17:55,402 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:17:55,403 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:18:55,552 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:18:55,552 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:18:55,552 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:19:55,649 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:19:55,649 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:19:55,649 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:20:55,754 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:20:55,755 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 00:20:55,755 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:20:55,786 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:20:55,787 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.50648892266577483
      y: -0.013860110973924512
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:20:56,112 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.50648892266577483
      y: -0.013860110973924512
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:20:56,376 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 00:20:56,377 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:20:56,377 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:20:56,379 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:20:56,380 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:20:56,563 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:20:56,563 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:20:56,563 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:20:56,565 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 00:20:56,565 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:20:56,565 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:20:56,566 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:20:56,647 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:20:56,647 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 00:20:56,687 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 00:20:56,687 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 00:20:56,805 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 00:20:56,806 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 00:20:56,835 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 00:20:56,843 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 00:20:56,905 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 00:20:56,906 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 00:20:56,906 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:20:56,906 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:20:57,007 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:20:57,007 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 00:20:57,056 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 00:20:57,069 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 00:20:57,100 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 00:20:57,124 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 00:20:57,291 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:20:57,292 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:20:57,294 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:20:57,303 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:20:57,303 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:20:57,303 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 00:20:57,303 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:20:57,333 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:20:57,333 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:20:57,333 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 00:20:57,333 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 00:20:57,333 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 00:20:57,334 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 00:20:57,334 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 00:20:57,364 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:20:57,692 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 00:20:57,693 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:20:57,693 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 00:20:58,645 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:20:58,646 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:20:58,646 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:20:59,427 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 00:20:59,428 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:20:59,448 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:20:59,448 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:20:59,448 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:20:59,448 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:20:59,448 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 00:20:59,473 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:20:59,526 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:20:59,526 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 00:20:59,526 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:20:59,529 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:23:08,692 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0029.ibw (each dataset is a channel).
2025-07-25 00:23:08,710 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 00:23:08,711 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:23:08,711 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:23:08,711 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:23:08,712 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:23:08,765 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 141, R: 136
2025-07-25 00:23:08,765 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 141, R: 136
2025-07-25 00:23:08,767 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003995029759040452
2025-07-25 00:23:08,797 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.18846462e-07  2.81994691e-08] m.
2025-07-25 00:23:08,797 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [1.77163035e-11 1.11811488e-11] m / s.
2025-07-25 00:23:08,799 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 00:23:08,799 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:23:08,807 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:23:08,886 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:23:09,059 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:23:09,072 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:23:09,080 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:23:09,149 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:23:09,190 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:23:09,191 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:23:09,292 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:23:09,293 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:23:09,308 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 00:23:09,309 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:23:09,337 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:23:09,361 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:23:09,558 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 00:23:09,570 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:23:09,602 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:23:09,643 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:23:09,806 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:23:09,806 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:23:09,807 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:23:09,807 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:23:09,807 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:23:09,807 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 00:23:09,807 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:23:09,837 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:23:09,867 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:23:09,867 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:23:09,868 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 00:23:09,868 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:23:09,868 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:23:09,868 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:23:09,978 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:23:09,978 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:23:09,979 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:24:10,013 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:24:10,014 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:24:10,014 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:25:10,125 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:25:10,125 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:25:10,126 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:26:10,264 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:26:10,264 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:26:10,264 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:27:10,337 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:27:10,337 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:27:10,337 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:28:10,447 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:28:10,447 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:28:10,448 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:29:10,614 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:29:10,614 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:29:10,614 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:30:10,668 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:30:10,668 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:30:10,668 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:31:10,812 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:31:10,812 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:31:10,813 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:32:10,966 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:32:10,966 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:32:10,966 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:33:11,015 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:33:11,015 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:33:11,016 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:34:11,077 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:34:11,078 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:34:11,078 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:35:11,196 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:35:11,196 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:35:11,197 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:36:11,209 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:36:11,209 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 00:36:11,209 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:36:11,395 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:36:11,396 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.504966711329909
      y: -0.036959284827449708
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:36:12,017 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.504966711329909
      y: -0.036959284827449708
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:36:12,282 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 00:36:12,283 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:36:12,283 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:36:12,284 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:36:12,286 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:36:12,467 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:36:12,468 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:36:12,470 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:36:12,490 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:36:12,506 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:36:12,506 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 00:36:12,506 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:36:12,553 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:36:12,553 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 00:36:12,595 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 00:36:12,595 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 00:36:12,712 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 00:36:12,713 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 00:36:12,747 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 00:36:12,756 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 00:36:12,811 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 00:36:12,812 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 00:36:12,812 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:36:12,812 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:36:12,914 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:36:12,914 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 00:36:12,963 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 00:36:12,974 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 00:36:13,021 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 00:36:13,031 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 00:36:13,198 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:36:13,199 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:36:13,200 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:36:13,241 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:36:13,241 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:36:13,242 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 00:36:13,242 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:36:13,242 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 00:36:13,242 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 00:36:13,242 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:36:13,242 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 00:36:13,242 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 00:36:13,243 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:36:13,243 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 00:36:13,289 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:36:13,605 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 00:36:13,606 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:36:13,606 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 00:36:14,572 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:36:14,572 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:36:14,573 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:36:15,278 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 00:36:15,278 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:36:15,380 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:36:15,381 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:36:15,382 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:36:15,382 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:36:15,382 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:36:15,382 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 00:36:15,383 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:36:15,407 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:36:15,407 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 00:36:15,407 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:38:24,352 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0030.ibw (each dataset is a channel).
2025-07-25 00:38:24,370 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 00:38:24,370 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:38:24,370 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:38:24,371 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:38:24,371 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:38:24,604 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 128, R: 144
2025-07-25 00:38:24,604 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 128, R: 144
2025-07-25 00:38:24,606 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004134852628861568
2025-07-25 00:38:24,634 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.41197075e-07  1.93503388e-08] m.
2025-07-25 00:38:24,635 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-2.44062851e-11 -9.66301873e-12] m / s.
2025-07-25 00:38:24,636 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 00:38:24,686 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:38:24,687 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:38:24,727 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:38:24,855 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:38:24,855 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:38:24,905 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:38:24,953 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:38:24,953 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:38:24,955 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:38:24,955 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:38:25,010 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:38:25,143 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 00:38:25,144 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:38:25,205 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:38:25,220 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:38:25,380 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 00:38:25,382 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:38:25,417 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:38:25,471 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:38:25,613 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:38:25,614 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:38:25,614 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:38:25,615 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:38:25,615 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 00:38:25,616 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:38:25,616 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:38:25,616 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:38:25,642 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-25 00:38:25,642 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:38:25,642 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 00:38:25,642 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:38:25,644 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:38:25,644 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:38:25,644 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:38:25,699 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:39:25,765 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:39:25,765 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:39:25,767 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:40:25,879 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:40:25,879 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:40:25,880 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:41:26,015 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:41:26,016 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:41:26,016 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:42:26,088 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:42:26,088 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:42:26,088 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:43:26,193 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:43:26,193 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:43:26,194 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:44:26,328 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:44:26,328 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:44:26,328 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:45:26,376 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:45:26,376 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:45:26,377 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:46:26,540 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:46:26,540 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:46:26,540 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:47:26,562 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:47:26,562 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:47:26,562 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:48:26,678 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:48:26,678 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:48:26,678 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:49:26,800 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:49:26,800 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:49:26,800 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:50:26,924 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:50:26,924 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:50:26,925 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:51:26,960 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:51:26,960 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 00:51:26,960 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:51:27,163 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:51:27,165 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.56031796770991693
      y: -0.011779930515468813
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:51:27,771 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.56031796770991693
      y: -0.011779930515468813
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 00:51:28,036 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 00:51:28,037 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:51:28,038 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:51:28,039 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:51:28,039 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:51:28,222 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:51:28,223 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
eMsg
2025-07-25 00:51:28,223 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 00:51:28,223 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:51:28,224 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:51:28,275 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:51:28,307 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:51:28,307 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 00:51:28,347 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 00:51:28,347 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 00:51:28,465 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 00:51:28,468 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 00:51:28,502 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 00:51:28,539 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 00:51:28,566 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 00:51:28,567 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 00:51:28,567 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:51:28,567 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:51:28,668 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:51:28,669 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 00:51:28,716 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 00:51:28,728 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 00:51:28,783 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 00:51:28,806 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 00:51:28,969 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:51:28,970 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:51:28,977 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:51:28,978 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:51:28,978 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 00:51:28,979 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:51:28,992 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:51:28,992 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:51:28,992 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 00:51:28,992 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 00:51:28,992 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 00:51:28,992 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 00:51:28,992 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 00:51:29,061 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:51:29,069 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:51:29,348 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 00:51:29,348 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:51:29,348 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 00:51:30,297 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 00:51:30,298 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 00:51:30,298 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 00:51:30,988 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 00:51:30,989 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:51:31,108 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:51:31,110 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:51:31,110 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:51:31,110 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 00:51:31,111 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:51:31,111 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:51:31,111 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:51:31,111 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:51:31,111 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 00:51:31,135 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:53:39,929 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0031.ibw (each dataset is a channel).
2025-07-25 00:53:39,950 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 00:53:39,951 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:53:39,951 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:53:39,951 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:53:39,951 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 00:53:40,158 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 129, R: 139
2025-07-25 00:53:40,158 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 129, R: 139
2025-07-25 00:53:40,160 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004156825827432639
2025-07-25 00:53:40,190 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.51370651e-07  2.43013168e-08] m.
2025-07-25 00:53:40,190 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.11096388e-11  5.40651368e-12] m / s.
2025-07-25 00:53:40,191 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 00:53:40,192 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:53:40,192 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:53:40,270 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:53:40,426 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 00:53:40,426 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 00:53:40,449 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:53:40,463 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:53:40,464 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:53:40,527 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 00:53:40,527 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:53:40,550 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 00:53:40,702 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 00:53:40,703 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:53:40,728 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:53:40,728 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:53:40,947 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 00:53:40,985 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:53:40,993 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:53:40,993 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:53:41,195 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:53:41,195 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 00:53:41,212 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 00:53:41,213 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 00:53:41,213 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 00:53:41,242 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 00:53:41,242 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 00:53:41,242 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 00:53:41,242 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 00:53:41,258 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 00:53:41,258 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 00:53:41,258 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 00:53:41,258 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 00:53:41,258 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:53:41,258 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:53:41,258 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:53:41,267 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 00:54:41,323 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:54:41,324 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:54:41,324 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:55:41,341 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:55:41,341 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:55:41,341 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:56:41,474 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:56:41,474 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:56:41,474 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:57:41,633 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:57:41,633 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:57:41,635 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:58:41,724 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:58:41,724 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:58:41,725 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 00:59:41,729 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 00:59:41,729 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 00:59:41,730 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:00:41,863 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:00:41,863 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:00:41,863 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:01:41,910 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:01:41,910 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:01:41,910 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:02:41,971 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:02:41,971 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:02:41,971 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:03:42,008 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:03:42,008 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:03:42,009 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:04:42,108 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:04:42,109 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:04:42,109 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:05:42,224 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:05:42,224 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:05:42,224 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:06:42,310 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:06:42,310 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 01:06:42,311 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:06:42,373 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:06:42,374 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5600684682864121
      y: -0.028534115693157391
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:06:42,842 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5600684682864121
      y: -0.028534115693157391
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:06:43,108 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 01:06:43,109 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:06:43,109 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:06:43,111 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:06:43,111 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:06:43,293 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:06:43,293 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:06:43,295 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:06:43,295 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 01:06:43,296 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:06:43,318 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:06:43,366 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:06:43,366 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 01:06:43,390 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:06:43,421 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 01:06:43,421 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 01:06:43,541 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 01:06:43,541 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 01:06:43,583 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 01:06:43,630 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 01:06:43,637 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 01:06:43,637 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 01:06:43,638 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:06:43,638 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:06:43,739 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:06:43,740 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 01:06:43,775 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 01:06:43,775 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 01:06:43,824 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 01:06:43,847 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 01:06:44,018 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:06:44,018 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:06:44,018 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:06:44,019 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:06:44,019 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 01:06:44,019 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:06:44,034 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:06:44,034 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:06:44,034 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 01:06:44,034 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 01:06:44,034 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 01:06:44,034 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 01:06:44,034 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 01:06:44,104 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:06:44,112 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:06:44,425 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 01:06:44,426 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:06:44,426 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 01:06:45,419 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:06:45,420 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:06:45,420 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:06:46,196 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 01:06:46,197 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:06:46,217 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:06:46,218 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:06:46,219 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:06:46,219 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 01:06:46,232 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:06:46,272 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:06:46,298 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:06:46,310 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:06:46,310 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 01:06:46,310 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:08:55,009 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0032.ibw (each dataset is a channel).
2025-07-25 01:08:55,084 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 01:08:55,084 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:08:55,084 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:08:55,085 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:08:55,085 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:08:55,226 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 134
2025-07-25 01:08:55,226 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 134
2025-07-25 01:08:55,228 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0029917818221504846
2025-07-25 01:08:55,257 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.20722690e-07  1.94968203e-08] m.
2025-07-25 01:08:55,258 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 3.34898616e-11 -5.25000413e-12] m / s.
2025-07-25 01:08:55,259 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 01:08:55,259 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:08:55,325 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:08:55,325 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:08:55,518 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:08:55,538 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:08:55,571 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:08:55,571 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:08:55,592 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:08:55,592 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:08:55,672 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:08:55,672 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:08:55,767 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 01:08:55,820 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:08:55,858 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:08:55,858 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:08:56,020 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 01:08:56,022 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:08:56,022 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:08:56,102 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:08:56,267 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:08:56,267 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:08:56,268 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:08:56,268 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:08:56,268 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:08:56,269 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 01:08:56,269 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:08:56,296 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:08:56,296 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:08:56,296 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:08:56,296 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 01:08:56,296 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:08:56,296 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:08:56,296 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:08:56,361 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:08:56,361 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:08:56,361 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:09:56,301 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:09:56,301 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:09:56,301 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:10:56,405 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:10:56,405 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:10:56,407 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:11:56,484 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:11:56,484 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:11:56,485 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:12:56,502 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:12:56,502 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:12:56,502 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:13:56,658 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:13:56,659 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:13:56,659 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:14:56,731 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:14:56,731 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:14:56,733 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:15:56,829 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:15:56,829 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:15:56,830 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:16:56,906 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:16:56,906 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:16:56,906 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:17:57,029 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:17:57,029 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:17:57,029 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:18:57,122 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:18:57,122 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:18:57,122 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:19:57,138 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:19:57,138 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:19:57,138 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:20:57,244 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:20:57,244 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:20:57,246 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:21:57,385 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:21:57,385 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 01:21:57,385 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:21:57,605 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:21:57,606 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49450018613733204
      y: -0.015386076104870068
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:21:57,870 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49450018613733204
      y: -0.015386076104870068
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:21:58,154 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 01:21:58,155 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:21:58,155 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:21:58,155 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:21:58,156 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:21:58,337 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:21:58,338 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:21:58,341 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:21:58,349 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:21:58,364 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:21:58,364 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 01:21:58,364 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:21:58,410 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:21:58,410 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 01:21:58,468 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 01:21:58,468 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 01:21:58,586 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 01:21:58,613 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 01:21:58,622 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 01:21:58,675 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 01:21:58,685 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 01:21:58,685 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 01:21:58,685 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:21:58,686 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:21:58,786 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:21:58,786 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 01:21:58,819 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 01:21:58,819 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 01:21:58,878 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 01:21:58,904 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 01:21:59,054 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:21:59,054 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:21:59,055 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:21:59,081 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:21:59,081 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:21:59,081 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 01:21:59,081 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 01:21:59,081 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 01:21:59,082 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 01:21:59,082 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 01:21:59,097 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:21:59,097 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:21:59,097 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 01:21:59,097 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:21:59,144 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:21:59,473 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 01:21:59,473 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:21:59,474 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 01:22:00,434 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:22:00,435 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:22:00,435 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:22:01,195 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 01:22:01,195 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:22:01,222 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:22:01,223 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:22:01,223 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:22:01,223 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 01:22:01,223 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:22:01,223 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:22:01,223 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 01:22:01,238 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:22:01,244 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:22:01,296 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:24:09,661 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0033.ibw (each dataset is a channel).
2025-07-25 01:24:09,682 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 01:24:09,682 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:24:09,682 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:24:09,683 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:24:09,683 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:24:09,765 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 129, R: 142
2025-07-25 01:24:09,765 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 129, R: 142
2025-07-25 01:24:09,766 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0016161658562408414
2025-07-25 01:24:09,797 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.89376205e-07  1.57475869e-08] m.
2025-07-25 01:24:09,797 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 3.42582026e-11 -4.09749272e-12] m / s.
2025-07-25 01:24:09,798 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 01:24:09,823 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:24:09,877 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:24:09,893 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:24:10,055 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:24:10,119 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:24:10,141 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:24:10,157 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:24:10,197 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:24:10,198 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:24:10,298 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:24:10,298 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:24:10,303 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 01:24:10,304 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:24:10,304 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:24:10,402 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:24:10,536 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 01:24:10,537 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:24:10,566 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:24:10,566 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:24:10,768 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:24:10,770 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:24:10,822 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:24:10,829 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:24:10,829 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:24:10,829 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:24:10,829 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 01:24:10,829 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:24:10,829 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:24:10,829 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:24:10,845 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:24:10,845 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:24:10,845 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 01:24:10,845 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:24:10,985 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:24:10,986 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:24:10,987 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:25:10,952 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:25:10,952 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:25:10,952 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:26:11,046 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:26:11,047 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:26:11,048 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:27:11,066 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:27:11,067 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:27:11,067 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:28:11,067 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:28:11,067 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:28:11,067 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:29:11,103 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:29:11,103 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:29:11,105 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:30:11,145 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:30:11,145 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:30:11,147 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:31:11,193 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:31:11,193 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:31:11,195 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:32:11,300 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:32:11,300 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:32:11,301 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:33:11,410 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:33:11,410 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:33:11,411 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:34:11,466 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:34:11,466 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:34:11,466 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:35:11,578 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:35:11,579 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:35:11,579 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:36:11,716 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:36:11,716 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:36:11,717 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:37:11,815 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:37:11,815 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 01:37:11,816 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:37:11,816 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:37:11,819 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46257930518566542
      y: -0.012542512168808433
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:37:11,909 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46257930518566542
      y: -0.012542512168808433
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:37:12,172 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 01:37:12,172 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:37:12,172 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:37:12,172 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:37:12,174 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:37:12,355 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:37:12,355 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:37:12,355 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:37:12,356 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:37:12,356 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 01:37:12,356 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:37:12,420 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:37:12,427 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:37:12,427 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 01:37:12,484 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 01:37:12,484 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 01:37:12,603 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 01:37:12,615 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 01:37:12,694 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 01:37:12,701 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 01:37:12,702 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 01:37:12,702 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 01:37:12,702 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:37:12,702 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:37:12,804 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:37:12,804 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 01:37:12,856 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 01:37:12,856 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 01:37:12,856 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 01:37:12,880 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 01:37:13,103 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:37:13,104 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:37:13,105 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:37:13,105 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:37:13,106 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 01:37:13,106 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:37:13,115 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:37:13,115 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:37:13,116 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 01:37:13,116 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 01:37:13,116 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 01:37:13,116 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 01:37:13,116 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 01:37:13,139 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:37:13,147 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:37:13,491 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 01:37:13,491 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:37:13,492 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 01:37:14,442 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:37:14,442 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:37:14,443 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:37:15,195 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 01:37:15,195 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:37:15,267 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:37:15,268 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:37:15,269 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:37:15,270 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 01:37:15,295 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:37:15,295 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 01:37:15,295 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:37:15,296 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:37:15,325 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:37:15,335 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:39:24,188 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0034.ibw (each dataset is a channel).
2025-07-25 01:39:24,206 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 01:39:24,207 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:39:24,208 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:39:24,208 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:39:24,208 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:39:24,311 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 123, R: 138
2025-07-25 01:39:24,312 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 123, R: 138
2025-07-25 01:39:24,313 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003202750153900342
2025-07-25 01:39:24,398 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.04768395e-07  1.81782331e-08] m.
2025-07-25 01:39:24,399 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.68407225e-11  2.65938993e-12] m / s.
2025-07-25 01:39:24,400 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 01:39:24,485 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:39:24,493 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:39:24,676 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:39:24,697 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:39:24,697 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:39:24,749 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:39:24,749 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:39:24,774 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:39:24,798 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:39:24,798 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:39:24,923 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 01:39:24,925 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:39:25,015 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:39:25,015 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:39:25,173 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 01:39:25,174 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:39:25,174 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:39:25,209 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:39:25,418 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:39:25,418 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:39:25,418 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:39:25,418 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:39:25,419 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 01:39:25,419 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:39:25,450 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:39:25,450 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:39:25,450 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:39:25,450 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 01:39:25,450 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:39:25,450 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:39:25,450 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:39:25,483 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:39:25,483 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:39:25,483 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:39:25,490 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:40:25,455 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:40:25,455 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:40:25,456 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:41:25,500 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:41:25,500 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:41:25,501 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:42:25,621 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:42:25,621 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:42:25,622 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:43:25,701 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:43:25,702 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:43:25,703 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:44:25,810 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:44:25,810 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:44:25,810 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:45:25,815 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:45:25,815 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:45:25,815 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:46:25,912 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:46:25,913 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:46:25,913 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:47:25,978 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:47:25,978 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:47:25,979 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:48:25,986 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:48:25,986 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:48:25,987 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:49:26,121 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:49:26,121 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:49:26,122 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:50:26,147 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:50:26,147 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:50:26,148 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:51:26,217 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:51:26,217 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:51:26,218 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:52:26,247 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:52:26,247 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 01:52:26,248 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:52:26,248 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:52:26,250 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.51794875470843016
      y: -0.020259599530152557
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:52:26,250 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.51794875470843016
      y: -0.020259599530152557
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 01:52:26,527 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 01:52:26,528 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:52:26,528 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:52:26,528 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:52:26,530 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:52:26,712 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:52:26,713 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:52:26,714 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:52:26,721 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:52:26,721 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 01:52:26,721 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:52:26,758 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:52:26,782 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:52:26,782 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 01:52:26,854 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 01:52:26,855 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 01:52:26,968 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 01:52:26,969 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 01:52:27,047 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 01:52:27,055 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 01:52:27,088 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 01:52:27,088 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 01:52:27,088 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:52:27,088 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:52:27,189 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:52:27,190 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 01:52:27,225 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 01:52:27,225 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 01:52:27,233 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 01:52:27,314 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 01:52:27,476 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:52:27,477 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:52:27,484 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:52:27,484 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:52:27,484 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 01:52:27,484 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:52:27,499 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:52:27,508 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:52:27,577 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:52:27,577 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:52:27,577 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 01:52:27,577 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 01:52:27,578 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 01:52:27,789 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 01:52:27,790 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 01:52:27,906 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 01:52:27,906 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:52:27,907 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 01:52:28,871 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 01:52:28,872 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 01:52:28,872 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 01:52:29,610 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 01:52:29,610 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:52:29,683 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:52:29,683 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:52:29,684 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:52:29,711 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:52:29,726 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:52:29,726 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 01:52:29,726 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:52:29,742 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:52:29,757 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:52:29,757 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 01:54:38,646 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0035.ibw (each dataset is a channel).
2025-07-25 01:54:38,665 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 01:54:38,665 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:54:38,665 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:54:38,667 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:54:38,667 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 01:54:38,944 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 124, R: 144
2025-07-25 01:54:38,944 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 124, R: 144
2025-07-25 01:54:38,947 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0038107171225466034
2025-07-25 01:54:38,975 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.13353445e-07  8.87465855e-09] m.
2025-07-25 01:54:38,975 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-9.38875775e-12 -1.01745493e-11] m / s.
2025-07-25 01:54:38,978 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 01:54:38,978 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:54:38,978 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:54:39,057 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:54:39,146 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 01:54:39,146 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 01:54:39,232 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:54:39,246 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:54:39,247 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 01:54:39,247 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:54:39,254 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:54:39,324 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 01:54:39,482 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 01:54:39,484 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:54:39,512 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:54:39,535 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:54:39,733 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 01:54:39,744 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:54:39,775 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:54:39,815 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:54:39,932 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 01:54:39,932 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 01:54:39,979 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:54:39,979 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 01:54:39,979 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 01:54:40,009 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 01:54:40,009 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 01:54:40,009 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 01:54:40,010 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 01:54:40,010 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 01:54:40,041 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 01:54:40,041 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 01:54:40,041 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 01:54:40,041 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:54:40,041 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:54:40,041 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:54:40,622 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 01:55:40,099 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:55:40,099 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:55:40,100 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:56:40,205 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:56:40,205 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:56:40,205 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:57:40,233 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:57:40,233 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:57:40,233 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:58:40,339 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:58:40,339 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:58:40,339 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 01:59:40,413 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 01:59:40,413 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 01:59:40,415 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:00:40,541 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:00:40,541 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:00:40,542 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:01:40,605 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:01:40,605 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:01:40,605 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:02:40,713 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:02:40,713 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:02:40,714 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:03:40,810 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:03:40,810 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:03:40,812 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:04:40,974 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:04:40,974 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:04:40,974 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:05:41,072 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:05:41,072 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:05:41,072 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:06:41,143 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:06:41,143 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:06:41,143 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:07:41,287 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:07:41,287 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 02:07:41,287 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:07:41,288 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:07:41,288 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.52070757828048941
      y: -0.000905021022158897
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:07:41,697 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.52070757828048941
      y: -0.000905021022158897
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:07:41,993 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 02:07:41,995 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:07:41,995 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:07:41,995 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:07:41,996 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:07:42,179 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:07:42,180 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:07:42,182 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:07:42,202 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:07:42,234 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:07:42,234 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 02:07:42,234 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:07:42,265 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:07:42,265 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 02:07:42,303 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 02:07:42,304 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 02:07:42,424 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 02:07:42,456 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 02:07:42,465 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 02:07:42,518 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 02:07:42,520 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 02:07:42,520 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:07:42,520 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:07:42,526 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 02:07:42,620 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:07:42,621 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 02:07:42,668 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 02:07:42,668 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 02:07:42,729 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 02:07:42,738 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 02:07:42,917 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:07:42,917 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:07:42,934 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:07:42,934 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:07:42,934 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 02:07:42,934 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 02:07:42,935 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 02:07:42,935 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 02:07:42,935 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 02:07:42,996 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:07:43,012 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:07:43,012 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:07:43,012 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 02:07:43,012 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:07:43,020 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:07:43,311 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 02:07:43,311 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:07:43,311 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 02:07:44,265 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:07:44,266 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:07:44,266 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:07:44,980 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 02:07:44,981 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:07:45,081 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:07:45,081 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:07:45,081 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:07:45,081 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 02:07:45,082 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:07:45,082 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:07:45,082 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:07:45,082 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:07:45,172 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:07:45,172 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 02:09:53,869 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0036.ibw (each dataset is a channel).
2025-07-25 02:09:53,943 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 02:09:53,943 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:09:53,944 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:09:53,944 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:09:53,944 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:09:54,150 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 126, R: 135
2025-07-25 02:09:54,150 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 126, R: 135
2025-07-25 02:09:54,152 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0037180675315022916
2025-07-25 02:09:54,181 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.27139934e-07  1.08090778e-08] m.
2025-07-25 02:09:54,181 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.50599836e-11  2.11310665e-12] m / s.
2025-07-25 02:09:54,182 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 02:09:54,183 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:09:54,183 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:09:54,242 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:09:54,430 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:09:54,430 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:09:54,454 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:09:54,455 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:09:54,455 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:09:54,523 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:09:54,532 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:09:54,532 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:09:54,706 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 02:09:54,718 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:09:54,718 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:09:54,803 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:09:54,951 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 02:09:54,953 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:09:54,981 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:09:54,982 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:09:55,204 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:09:55,205 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:09:55,205 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:09:55,205 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:09:55,205 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:09:55,206 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 02:09:55,206 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:09:55,206 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:09:55,227 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:09:55,249 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:09:55,249 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:09:55,249 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:09:55,249 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 02:09:55,249 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:09:55,249 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:09:55,250 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:09:55,903 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:10:55,358 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:10:55,358 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:10:55,360 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:11:55,466 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:11:55,466 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:11:55,466 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:12:55,470 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:12:55,471 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:12:55,471 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:13:55,556 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:13:55,556 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:13:55,558 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:14:55,631 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:14:55,631 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:14:55,632 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:15:55,639 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:15:55,639 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:15:55,640 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:16:55,745 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:16:55,745 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:16:55,745 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:17:55,846 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:17:55,846 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:17:55,847 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:18:55,871 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:18:55,871 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:18:55,872 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:19:55,891 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:19:55,891 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:19:55,891 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:20:55,976 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:20:55,977 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:20:55,977 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:21:56,058 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:21:56,059 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:21:56,060 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:22:56,141 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:22:56,141 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 02:22:56,141 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:22:56,280 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:22:56,282 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.53892957419748633
      y: -0.012463313826522162
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:22:56,576 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.53892957419748633
      y: -0.012463313826522162
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:22:56,859 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 02:22:56,860 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:22:56,860 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:22:56,861 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:22:56,861 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:22:57,042 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:22:57,043 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:22:57,043 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:22:57,044 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 02:22:57,044 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:22:57,044 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:22:57,058 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:22:57,128 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:22:57,128 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 02:22:57,169 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 02:22:57,169 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 02:22:57,285 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 02:22:57,285 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 02:22:57,301 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 02:22:57,340 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 02:22:57,387 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 02:22:57,387 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 02:22:57,387 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:22:57,387 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:22:57,488 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:22:57,488 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 02:22:57,521 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 02:22:57,548 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 02:22:57,563 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 02:22:57,618 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 02:22:57,768 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:22:57,769 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:22:57,770 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:22:57,781 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:22:57,781 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:22:57,781 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 02:22:57,781 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:22:57,812 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:22:57,812 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:22:57,812 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 02:22:57,812 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 02:22:57,812 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 02:22:57,812 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 02:22:57,814 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 02:22:57,828 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:22:58,191 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 02:22:58,192 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:22:58,193 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 02:22:59,144 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:22:59,144 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:22:59,144 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:22:59,863 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 02:22:59,864 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:22:59,951 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:22:59,952 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:22:59,953 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:22:59,953 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:22:59,953 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 02:22:59,958 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:22:59,965 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:23:00,043 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:23:00,043 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 02:23:00,043 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:25:09,099 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0037.ibw (each dataset is a channel).
2025-07-25 02:25:09,120 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 02:25:09,120 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:25:09,120 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:25:09,120 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:25:09,120 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:25:09,244 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 141, R: 142
2025-07-25 02:25:09,244 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 141, R: 142
2025-07-25 02:25:09,246 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0015536467401501032
2025-07-25 02:25:09,276 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.03202305e-07  1.07572943e-08] m.
2025-07-25 02:25:09,276 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 2.61644564e-11 -5.66007213e-14] m / s.
2025-07-25 02:25:09,278 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 02:25:09,279 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:25:09,279 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:25:09,318 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:25:09,547 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:25:09,549 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:25:09,549 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:25:09,600 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:25:09,600 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:25:09,601 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:25:09,702 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:25:09,702 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:25:09,796 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 02:25:09,827 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace

2025-07-25 02:25:09,883 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:25:10,054 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 02:25:10,093 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:25:10,093 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:25:10,165 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:25:10,300 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:25:10,300 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:25:10,300 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:25:10,300 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:25:10,300 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 02:25:10,301 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:25:10,359 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:25:10,359 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:25:10,359 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:25:10,359 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 02:25:10,359 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:25:10,359 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:25:10,359 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:25:10,392 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:25:10,392 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:25:10,393 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:26:10,412 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:26:10,412 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:26:10,413 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:27:10,432 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:27:10,432 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:27:10,432 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:28:10,522 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:28:10,522 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:28:10,522 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:29:10,585 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:29:10,587 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:29:10,587 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:30:10,702 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:30:10,702 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:30:10,702 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:31:10,732 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:31:10,732 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:31:10,733 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:32:10,835 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:32:10,835 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:32:10,836 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:33:10,849 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:33:10,849 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:33:10,849 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:34:10,856 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:34:10,856 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:34:10,857 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:35:10,950 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:35:10,950 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:35:10,950 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:36:10,959 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:36:10,959 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:36:10,959 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:37:10,990 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:37:10,990 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:37:10,990 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:38:11,006 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:38:11,006 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 02:38:11,006 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:38:11,101 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:38:11,102 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4827214321473976
      y: -0.010712988723855486
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:38:11,429 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4827214321473976
      y: -0.010712988723855486
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:38:11,694 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 02:38:11,694 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:38:11,695 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:38:11,695 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:38:11,695 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:38:11,876 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:38:11,877 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:38:11,927 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:38:11,965 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:38:11,965 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:38:11,965 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 02:38:11,965 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 02:38:11,965 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:38:11,965 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:38:12,006 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 02:38:12,006 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 02:38:12,126 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 02:38:12,126 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 02:38:12,126 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 02:38:12,208 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 02:38:12,224 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 02:38:12,224 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 02:38:12,225 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:38:12,225 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:38:12,326 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:38:12,327 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 02:38:12,807 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 02:38:12,828 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 02:38:12,882 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition

2025-07-25 02:38:13,056 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:38:13,057 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:38:13,057 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:38:13,058 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:38:13,058 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 02:38:13,059 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:38:13,109 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:38:13,146 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:38:13,146 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:38:13,146 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:38:13,147 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 02:38:13,147 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 02:38:13,147 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 02:38:13,288 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 02:38:13,288 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:38:13,357 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 02:38:13,357 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 02:38:14,027 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 02:38:14,986 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:38:14,986 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:38:14,986 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:38:15,723 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 02:38:15,723 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:38:15,794 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:38:15,794 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:38:15,799 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:38:15,823 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:38:15,853 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:38:15,869 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:38:15,869 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 02:38:15,884 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:38:15,884 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 02:38:15,884 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:40:24,934 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0038.ibw (each dataset is a channel).
2025-07-25 02:40:24,953 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 02:40:24,954 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:40:24,954 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:40:24,954 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:40:24,954 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:40:24,990 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 140, R: 134
2025-07-25 02:40:24,990 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 140, R: 134
2025-07-25 02:40:24,991 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0024063881160051805
2025-07-25 02:40:25,022 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.86705875e-07  1.00266611e-08] m.
2025-07-25 02:40:25,022 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 1.80118133e-11 -7.97750097e-13] m / s.
2025-07-25 02:40:25,023 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 02:40:25,025 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:40:25,081 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:40:25,081 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:40:25,342 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:40:25,345 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:40:25,347 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:40:25,347 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:40:25,433 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:40:25,433 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:40:25,535 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:40:25,536 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:40:25,583 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 02:40:25,611 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:40:25,611 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:40:25,619 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:40:25,816 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 02:40:25,875 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:40:25,875 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:40:25,915 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:40:26,065 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:40:26,066 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:40:26,066 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:40:26,067 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:40:26,067 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:40:26,067 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 02:40:26,067 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:40:26,139 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:40:26,139 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:40:26,140 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 02:40:26,140 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:40:26,140 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:40:26,140 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:40:26,236 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:40:26,237 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:40:26,237 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:41:26,301 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:41:26,301 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:41:26,303 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:42:26,338 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:42:26,339 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:42:26,339 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:43:26,401 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:43:26,401 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:43:26,401 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:44:26,495 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:44:26,495 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:44:26,496 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:45:26,650 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:45:26,650 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:45:26,651 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:46:26,786 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:46:26,787 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:46:26,788 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:47:26,868 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:47:26,868 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:47:26,869 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:48:26,904 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:48:26,904 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:48:26,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:49:27,005 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:49:27,005 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:49:27,006 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:50:27,147 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:50:27,147 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:50:27,148 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:51:27,187 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:51:27,189 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:51:27,189 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:52:27,234 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:52:27,234 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:52:27,234 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:53:27,264 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:53:27,264 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 02:53:27,265 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:53:27,327 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:53:27,328 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.47260022568074445
      y: -0.0094019165214364181
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:53:27,656 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.47260022568074445
      y: -0.0094019165214364181
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 02:53:27,937 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 02:53:27,937 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:53:27,939 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:53:27,940 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:53:27,941 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:53:28,124 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:53:28,124 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:53:28,183 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:53:28,206 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:53:28,206 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 02:53:28,222 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:53:28,222 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:53:28,222 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 02:53:28,222 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:53:28,247 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 02:53:28,247 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 02:53:28,366 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 02:53:28,368 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d

2025-07-25 02:53:28,466 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 02:53:28,467 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 02:53:28,467 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 02:53:28,467 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:53:28,467 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:53:28,568 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:53:28,568 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 02:53:28,599 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 02:53:28,599 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 02:53:28,628 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 02:53:28,629 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 02:53:28,832 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:53:28,832 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:53:28,833 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:53:28,835 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:53:28,835 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 02:53:28,836 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:53:28,871 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:53:28,894 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:53:28,894 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:53:28,894 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:53:28,894 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 02:53:28,894 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 02:53:28,894 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 02:53:29,120 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 02:53:29,121 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 02:53:29,253 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 02:53:29,253 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:53:29,254 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 02:53:30,239 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 02:53:30,239 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 02:53:30,239 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 02:53:30,893 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 02:53:30,893 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:53:31,043 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:53:31,043 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:53:31,044 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:53:31,045 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 02:53:31,045 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:53:31,064 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:53:31,071 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:53:31,071 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 02:53:31,071 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:53:31,134 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:55:39,851 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0039.ibw (each dataset is a channel).
2025-07-25 02:55:39,874 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 02:55:39,874 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:55:39,875 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:55:39,875 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:55:39,875 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 02:55:39,900 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 128, R: 135
2025-07-25 02:55:39,900 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 128, R: 135
2025-07-25 02:55:39,903 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0027663535576336546
2025-07-25 02:55:39,931 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.78248695e-07  1.65590162e-08] m.
2025-07-25 02:55:39,932 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [9.24098043e-12 7.13776534e-12] m / s.
2025-07-25 02:55:39,932 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 02:55:39,933 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:55:39,978 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:55:40,198 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:55:40,204 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:55:40,243 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:55:40,380 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 02:55:40,380 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 02:55:40,448 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 02:55:40,481 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 02:55:40,481 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 02:55:40,481 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:55:40,487 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:55:40,509 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:55:40,509 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 02:55:40,698 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 02:55:40,767 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:55:40,774 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace

2025-07-25 02:55:40,952 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:55:40,953 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 02:55:40,954 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 02:55:40,954 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 02:55:40,954 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 02:55:40,956 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 02:55:41,040 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 02:55:41,040 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 02:55:41,040 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 02:55:41,040 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 02:55:41,040 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:55:41,041 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:55:41,041 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:55:41,047 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 02:55:41,164 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 02:55:41,164 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 02:56:41,091 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:56:41,091 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:56:41,091 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:57:41,162 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:57:41,162 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:57:41,162 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:58:41,295 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:58:41,295 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:58:41,297 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 02:59:41,350 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 02:59:41,350 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 02:59:41,351 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:00:41,424 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:00:41,424 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:00:41,424 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:01:41,534 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:01:41,535 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:01:41,536 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:02:41,565 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:02:41,565 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:02:41,565 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:03:41,676 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:03:41,676 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:03:41,676 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:04:41,727 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:04:41,727 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:04:41,727 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:05:41,792 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:05:41,792 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:05:41,792 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:06:41,881 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:06:41,881 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:06:41,881 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:07:41,945 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:07:41,945 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:07:41,945 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:08:42,097 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:08:42,097 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 03:08:42,097 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:08:42,329 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:08:42,331 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.47101343353990438
      y: -0.022147557378592836
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:08:42,333 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.47101343353990438
      y: -0.022147557378592836
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:08:42,596 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 03:08:42,596 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:08:42,598 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:08:42,599 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:08:42,599 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:08:42,783 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:08:42,784 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:08:42,785 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:08:42,785 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:08:42,852 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:08:42,852 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 03:08:42,852 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:08:42,868 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:08:42,868 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 03:08:42,908 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 03:08:42,908 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 03:08:43,026 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 03:08:43,027 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 03:08:43,055 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 03:08:43,063 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 03:08:43,125 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 03:08:43,126 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 03:08:43,126 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:08:43,126 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:08:43,227 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:08:43,227 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 03:08:43,280 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 03:08:43,288 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 03:08:43,319 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 03:08:43,344 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 03:08:43,526 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:08:43,527 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:08:43,554 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:08:43,554 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:08:43,554 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 03:08:43,554 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 03:08:43,554 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 03:08:43,556 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 03:08:43,556 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 03:08:43,586 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:08:43,586 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:08:43,586 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:08:43,586 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 03:08:43,586 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:08:43,625 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:08:43,913 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 03:08:43,914 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:08:43,914 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 03:08:44,876 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:08:44,876 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:08:44,877 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:08:45,571 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 03:08:45,572 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:08:45,678 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:08:45,678 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:08:45,678 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:08:45,680 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:08:45,680 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:08:45,680 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:08:45,680 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:08:45,680 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 03:08:45,680 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 03:08:45,680 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:10:54,418 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0040.ibw (each dataset is a channel).
2025-07-25 03:10:54,437 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 03:10:54,437 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:10:54,437 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:10:54,438 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:10:54,438 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:10:54,557 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 140, R: 136
2025-07-25 03:10:54,557 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 140, R: 136
2025-07-25 03:10:54,559 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0031347891409317374
2025-07-25 03:10:54,594 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.61194678e-07  1.64706674e-08] m.
2025-07-25 03:10:54,594 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 1.86456480e-11 -9.65943106e-14] m / s.
2025-07-25 03:10:54,595 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 03:10:54,595 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:10:54,595 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:10:54,683 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:10:54,850 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:10:54,851 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:10:54,860 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:10:54,860 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:10:54,916 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:10:54,917 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:10:55,018 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:10:55,018 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:10:55,082 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 03:10:55,125 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:10:55,126 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:10:55,150 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:10:55,315 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 03:10:55,318 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:10:55,390 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:10:55,390 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:10:55,566 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:10:55,567 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:10:55,567 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:10:55,569 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:10:55,569 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 03:10:55,569 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:10:55,601 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:10:55,654 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:10:55,655 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:10:55,655 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:10:55,655 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 03:10:55,655 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:10:55,656 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:10:55,656 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:10:55,733 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:10:55,733 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:10:55,733 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:11:55,698 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:11:55,698 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:11:55,698 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:12:55,809 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:12:55,809 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:12:55,809 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:13:55,889 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:13:55,890 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:13:55,890 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:14:55,904 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:14:55,904 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:14:55,904 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:15:55,966 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:15:55,966 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:15:55,967 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:16:56,128 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:16:56,129 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:16:56,129 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:17:56,298 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:17:56,298 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:17:56,298 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:18:56,460 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:18:56,460 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:18:56,461 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:19:56,509 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:19:56,509 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:19:56,509 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:20:56,654 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:20:56,655 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:20:56,655 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:21:56,729 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:21:56,729 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:21:56,730 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:22:56,895 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:22:56,895 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:22:56,895 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:23:56,975 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:23:56,975 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 03:23:56,976 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:23:57,051 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:23:57,054 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4465944330274858
      y: -0.016395030415637557
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:23:57,423 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4465944330274858
      y: -0.016395030415637557
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:23:57,689 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 03:23:57,689 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:23:57,689 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:23:57,689 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:23:57,689 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:23:57,872 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:23:57,873 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:23:57,874 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:23:57,937 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:23:57,943 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:23:57,943 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:23:57,943 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 03:23:57,943 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 03:23:57,943 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:23:58,001 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 03:23:58,001 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 03:23:58,119 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 03:23:58,131 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 03:23:58,207 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 03:23:58,217 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 03:23:58,218 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 03:23:58,218 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 03:23:58,218 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:23:58,218 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:23:58,319 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:23:58,320 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 03:23:58,369 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 03:23:58,369 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 03:23:58,369 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 03:23:58,396 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 03:23:58,618 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:23:58,619 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:23:58,628 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:23:58,628 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:23:58,628 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 03:23:58,628 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 03:23:58,628 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 03:23:58,628 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 03:23:58,629 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 03:23:58,653 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:23:58,659 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:23:58,675 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:23:58,675 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:23:58,675 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 03:23:58,675 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:23:59,004 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 03:23:59,004 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:23:59,005 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 03:23:59,992 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:23:59,992 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:23:59,992 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:24:01,052 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 03:24:01,052 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:24:01,064 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:24:01,065 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:24:01,065 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:24:01,088 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:24:01,088 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 03:24:01,088 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:24:01,088 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:24:01,118 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:24:01,119 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 03:24:01,154 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:26:09,357 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0041.ibw (each dataset is a channel).
2025-07-25 03:26:09,433 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 03:26:09,433 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:26:09,433 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:26:09,433 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:26:09,433 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:26:09,457 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 129, R: 139
2025-07-25 03:26:09,458 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 129, R: 139
2025-07-25 03:26:09,459 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.002508518131003347
2025-07-25 03:26:09,489 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.49231961e-07  1.85694818e-08] m.
2025-07-25 03:26:09,489 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [1.3069811e-11 2.2930501e-12] m / s.
2025-07-25 03:26:09,490 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 03:26:09,490 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
race
2025-07-25 03:26:09,557 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:26:09,749 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:26:09,759 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:26:09,767 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:26:09,821 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:26:10,295 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:26:10,297 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:26:10,317 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 03:26:10,333 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:26:10,373 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:26:10,395 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:26:10,399 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:26:10,399 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:26:10,399 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:26:10,560 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 03:26:10,597 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:26:10,653 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:26:10,659 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:26:10,802 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:26:10,803 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:26:10,803 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:26:10,803 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:26:10,803 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:26:10,803 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:26:10,805 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 03:26:10,805 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:26:10,805 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:26:10,805 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 03:26:10,806 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:26:10,806 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:26:10,806 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:26:10,862 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:26:11,081 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:26:11,082 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:27:10,975 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:27:10,975 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:27:10,976 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:28:11,082 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:28:11,083 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:28:11,083 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:29:11,239 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:29:11,239 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:29:11,240 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:30:11,281 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:30:11,281 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:30:11,282 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:31:11,302 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:31:11,302 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:31:11,302 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:32:11,302 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:32:11,302 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:32:11,302 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:33:11,353 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:33:11,353 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:33:11,354 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:34:11,493 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:34:11,493 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:34:11,493 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:35:11,600 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:35:11,600 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:35:11,601 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:36:11,681 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:36:11,681 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:36:11,681 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:37:11,827 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:37:11,827 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:37:11,828 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:38:11,862 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:38:11,862 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:38:11,862 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:39:11,920 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:39:11,920 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 03:39:11,920 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:39:11,967 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:39:11,968 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.43900274598456918
      y: -0.020364159905021464
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:39:12,310 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.43900274598456918
      y: -0.020364159905021464
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:39:12,593 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 03:39:12,595 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:39:12,596 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:39:12,596 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:39:12,597 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:39:12,780 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:39:12,781 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:39:12,781 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:39:12,782 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 03:39:12,783 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:39:12,803 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:39:12,860 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:39:12,867 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:39:12,867 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 03:39:12,909 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 03:39:12,909 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 03:39:13,026 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 03:39:13,027 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 03:39:13,027 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 03:39:13,070 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 03:39:13,128 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 03:39:13,128 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 03:39:13,128 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:39:13,128 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:39:13,229 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:39:13,230 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 03:39:13,275 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 03:39:13,290 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 03:39:13,314 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 03:39:13,336 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 03:39:13,511 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:39:13,511 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:39:13,511 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:39:13,512 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:39:13,512 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 03:39:13,513 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:39:13,554 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:39:13,554 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:39:13,554 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 03:39:13,555 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 03:39:13,555 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 03:39:13,555 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 03:39:13,556 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 03:39:13,594 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:39:13,600 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:39:13,913 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 03:39:13,914 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:39:13,914 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 03:39:14,870 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:39:14,870 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:39:14,870 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:39:15,599 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 03:39:15,600 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:39:15,672 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:39:15,672 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:39:15,673 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:39:15,673 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:39:15,673 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 03:39:15,701 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:39:15,731 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:39:15,731 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 03:39:15,731 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:39:15,758 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:41:24,732 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0042.ibw (each dataset is a channel).
2025-07-25 03:41:24,752 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 03:41:24,752 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:41:24,753 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:41:24,753 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:41:24,753 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:41:24,957 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 143, R: 137
2025-07-25 03:41:24,957 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 143, R: 137
2025-07-25 03:41:24,960 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0034948165305971795
2025-07-25 03:41:24,990 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.47848247e-07  1.26471658e-08] m.
2025-07-25 03:41:24,991 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 1.51270706e-12 -6.47440807e-12] m / s.
2025-07-25 03:41:24,992 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 03:41:24,992 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:41:24,992 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:41:24,995 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:41:25,232 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:41:25,233 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:41:25,255 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:41:25,256 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:41:25,256 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:41:25,277 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:41:25,334 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:41:25,334 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:41:25,490 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 03:41:25,518 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:41:25,518 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:41:25,558 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:41:25,732 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 03:41:25,784 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:41:25,784 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:41:25,839 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:41:25,975 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:41:25,975 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:41:25,975 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:41:25,975 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:41:25,975 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:41:25,976 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 03:41:25,976 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:41:26,021 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:41:26,021 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:41:26,021 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:41:26,048 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:41:26,048 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:41:26,048 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:41:26,049 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 03:41:26,049 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:41:26,049 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:41:26,049 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:42:26,200 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:42:26,200 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:42:26,202 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:43:26,309 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:43:26,309 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:43:26,310 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:44:26,450 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:44:26,450 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:44:26,452 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:45:26,597 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:45:26,597 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:45:26,597 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:46:26,751 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:46:26,751 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:46:26,752 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:47:26,755 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:47:26,755 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:47:26,757 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:48:26,865 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:48:26,865 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:48:26,865 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:49:26,921 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:49:26,921 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:49:26,921 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:50:26,971 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:50:26,971 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:50:26,972 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:51:27,125 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:51:27,125 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:51:27,125 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:52:27,236 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:52:27,236 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:52:27,237 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:53:27,256 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:53:27,256 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:53:27,257 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:54:27,278 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:54:27,278 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 03:54:27,279 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:54:27,280 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:54:27,282 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.44666342610652343
      y: -0.0075761138812761621
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:54:27,283 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.44666342610652343
      y: -0.0075761138812761621
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 03:54:27,561 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 03:54:27,561 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:54:27,562 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:54:27,564 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:54:27,564 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:54:27,746 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:54:27,747 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:54:27,794 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:54:27,815 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:54:27,815 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 03:54:27,815 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:54:27,831 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:54:27,831 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:54:27,831 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 03:54:27,872 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 03:54:27,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 03:54:27,991 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 03:54:27,991 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 03:54:27,991 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 03:54:28,071 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 03:54:28,104 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 03:54:28,104 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 03:54:28,104 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:54:28,104 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:54:28,205 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:54:28,206 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 03:54:28,242 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 03:54:28,242 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 03:54:28,266 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition

2025-07-25 03:54:28,487 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:54:28,487 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:54:28,487 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:54:28,488 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:54:28,488 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 03:54:28,488 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:54:28,525 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:54:28,532 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:54:28,532 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:54:28,532 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:54:28,532 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 03:54:28,532 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 03:54:28,532 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 03:54:28,532 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 03:54:28,532 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 03:54:28,956 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 03:54:28,956 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:54:28,957 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 03:54:29,927 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 03:54:29,928 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 03:54:29,928 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 03:54:30,695 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 03:54:30,696 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:54:30,732 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:54:30,732 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:54:30,732 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:54:30,732 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:54:30,732 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 03:54:30,779 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:54:30,779 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 03:54:30,779 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:54:30,794 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:54:30,798 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:56:39,721 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0043.ibw (each dataset is a channel).
2025-07-25 03:56:39,740 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 03:56:39,740 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:56:39,740 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:56:39,740 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:56:39,740 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 03:56:39,818 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 144
2025-07-25 03:56:39,818 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 144
2025-07-25 03:56:39,820 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0007817855159051393
2025-07-25 03:56:39,909 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.4678896e-07  5.7446841e-09] m.
2025-07-25 03:56:39,909 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 1.15724549e-12 -7.54079278e-12] m / s.
2025-07-25 03:56:39,910 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 03:56:39,929 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:56:39,929 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:56:39,969 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:56:40,169 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:56:40,193 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:56:40,218 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 03:56:40,218 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 03:56:40,248 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:56:40,319 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 03:56:40,319 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 03:56:40,413 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 03:56:40,414 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:56:40,459 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:56:40,460 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:56:40,650 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 03:56:40,689 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:56:40,725 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace

2025-07-25 03:56:40,903 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:56:40,904 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 03:56:40,904 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 03:56:40,905 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 03:56:40,905 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 03:56:40,906 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 03:56:40,968 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 03:56:40,991 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 03:56:40,991 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 03:56:40,992 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 03:56:40,992 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 03:56:40,992 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:56:40,992 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:56:40,992 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:56:41,009 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 03:56:41,009 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 03:56:41,009 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 03:57:41,070 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:57:41,070 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:57:41,071 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:58:41,107 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:58:41,107 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:58:41,108 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 03:59:41,248 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 03:59:41,248 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 03:59:41,249 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:00:41,369 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:00:41,369 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:00:41,370 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:01:41,408 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:01:41,408 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:01:41,409 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:02:41,468 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:02:41,468 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:02:41,469 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:03:41,627 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:03:41,627 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:03:41,629 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:04:41,800 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:04:41,800 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:04:41,800 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:05:41,905 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:05:41,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:05:41,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:06:41,934 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:06:41,934 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:06:41,934 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:07:41,999 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:07:41,999 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:07:42,000 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:08:42,027 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:08:42,028 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:08:42,028 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:09:42,175 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:09:42,175 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 04:09:42,175 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:09:42,346 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:09:42,348 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.44588288431013379
      y: 0.00015944725675565795
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:09:42,958 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.44588288431013379
      y: 0.00015944725675565795
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:09:43,241 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 04:09:43,242 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:09:43,242 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:09:43,244 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:09:43,245 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:09:43,430 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:09:43,430 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:09:43,431 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:09:43,432 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 04:09:43,432 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:09:43,432 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:09:43,458 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:09:43,513 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:09:43,513 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 04:09:43,553 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 04:09:43,554 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 04:09:43,691 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 04:09:43,700 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 04:09:43,741 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 04:09:43,774 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 04:09:43,774 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 04:09:43,774 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:09:43,774 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:09:43,779 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 04:09:43,875 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:09:43,875 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 04:09:43,937 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 04:09:43,937 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 04:09:43,967 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 04:09:44,021 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 04:09:44,186 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:09:44,187 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:09:44,188 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:09:44,200 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:09:44,200 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:09:44,200 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 04:09:44,200 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 04:09:44,200 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 04:09:44,200 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 04:09:44,201 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 04:09:44,215 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:09:44,215 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:09:44,215 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 04:09:44,215 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:09:44,231 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:09:44,560 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 04:09:44,561 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:09:44,562 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 04:09:45,521 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:09:45,522 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:09:45,522 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:09:46,234 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 04:09:46,234 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:09:46,301 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:09:46,301 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:09:46,303 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:09:46,304 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 04:09:46,335 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:09:46,356 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:09:46,394 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:09:46,394 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:09:46,394 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 04:09:46,394 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:11:55,421 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0044.ibw (each dataset is a channel).
2025-07-25 04:11:55,440 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 04:11:55,440 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:11:55,440 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:11:55,441 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:11:55,441 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:11:55,547 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 126, R: 137
2025-07-25 04:11:55,547 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 126, R: 137
2025-07-25 04:11:55,549 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.00337251249046839
2025-07-25 04:11:55,578 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.53900860e-07  8.87068218e-09] m.
2025-07-25 04:11:55,578 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-7.76986085e-12  3.41520137e-12] m / s.
2025-07-25 04:11:55,580 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 04:11:55,645 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:11:55,645 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:11:55,687 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:11:55,837 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:11:55,839 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:11:55,913 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:11:55,914 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:11:55,922 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:11:55,922 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:11:56,023 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:11:56,024 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:11:56,086 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 04:11:56,124 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:11:56,178 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:11:56,178 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:11:56,322 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 04:11:56,323 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:11:56,323 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:11:56,407 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:11:56,585 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:11:56,585 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:11:56,585 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:11:56,587 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:11:56,587 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 04:11:56,587 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:11:56,587 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:11:56,587 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:11:56,587 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:11:56,587 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 04:11:56,588 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:11:56,588 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:11:56,588 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:11:56,686 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:11:56,714 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:11:56,714 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:11:56,714 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:12:56,737 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:12:56,737 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:12:56,737 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:13:56,807 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:13:56,807 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:13:56,807 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:14:56,944 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:14:56,945 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:14:56,945 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:15:57,088 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:15:57,088 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:15:57,088 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:16:57,259 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:16:57,259 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:16:57,259 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:17:57,305 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:17:57,305 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:17:57,306 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:18:57,441 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:18:57,441 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:18:57,441 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:19:57,480 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:19:57,480 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:19:57,480 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:20:57,636 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:20:57,636 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:20:57,636 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:21:57,707 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:21:57,707 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:21:57,709 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:22:57,840 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:22:57,840 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:22:57,840 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:23:57,943 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:23:57,944 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:23:57,944 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:24:57,988 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:24:57,990 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 04:24:57,991 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:24:58,111 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:24:58,114 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45998782201369015
      y: -0.01154617428223283
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:24:58,705 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45998782201369015
      y: -0.01154617428223283
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:24:58,971 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 04:24:58,971 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:24:58,972 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:24:58,973 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:24:58,973 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:24:59,158 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:24:59,160 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:24:59,161 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:24:59,210 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:24:59,211 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 04:24:59,211 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:24:59,241 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:24:59,241 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 04:24:59,258 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:24:59,282 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 04:24:59,282 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 04:24:59,400 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 04:24:59,400 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 04:24:59,400 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 04:24:59,436 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 04:24:59,499 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 04:24:59,500 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 04:24:59,500 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:24:59,501 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:24:59,602 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:24:59,602 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 04:24:59,633 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 04:24:59,661 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 04:24:59,662 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 04:24:59,717 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 04:24:59,864 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:24:59,865 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:24:59,866 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:24:59,927 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:24:59,927 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:24:59,927 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:24:59,928 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 04:24:59,928 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 04:24:59,928 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 04:24:59,942 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:24:59,942 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:24:59,943 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 04:24:59,943 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:25:00,153 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 04:25:00,154 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 04:25:00,286 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 04:25:00,286 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:25:00,287 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 04:25:01,248 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:25:01,249 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:25:01,249 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:25:02,006 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 04:25:02,006 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:25:02,061 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:25:02,062 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
eMsg
2025-07-25 04:25:02,062 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 04:25:02,062 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:25:02,063 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:25:02,063 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:25:02,063 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:25:02,063 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 04:25:02,107 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:27:10,457 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0045.ibw (each dataset is a channel).
2025-07-25 04:27:10,476 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 04:27:10,476 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:27:10,476 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:27:10,476 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:27:10,477 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:27:10,510 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 130, R: 137
2025-07-25 04:27:10,511 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 130, R: 137
2025-07-25 04:27:10,512 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0023084609616891186
2025-07-25 04:27:10,543 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.55538144e-07  9.60154186e-09] m.
2025-07-25 04:27:10,544 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.78801387e-12  7.98143316e-13] m / s.
2025-07-25 04:27:10,545 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 04:27:10,590 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:27:10,627 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:27:10,627 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:27:10,810 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:27:10,872 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:27:10,879 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:27:10,893 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:27:10,966 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:27:10,966 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:27:11,062 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 04:27:11,067 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:27:11,067 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:27:11,068 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:27:11,143 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:27:11,150 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:27:11,158 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:27:11,303 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 04:27:11,304 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:27:11,304 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:27:11,304 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:27:11,548 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:27:11,549 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:27:11,564 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:27:11,564 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:27:11,564 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:27:11,564 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 04:27:11,564 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:27:11,564 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:27:11,565 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:27:11,589 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:27:11,595 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:27:11,595 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:27:11,595 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 04:27:11,595 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:27:11,800 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:27:11,802 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:28:11,643 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:28:11,643 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:28:11,643 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:29:11,644 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:29:11,644 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:29:11,644 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:30:11,765 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:30:11,766 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:30:11,766 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:31:11,810 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:31:11,810 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:31:11,810 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:32:11,908 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:32:11,908 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:32:11,910 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:33:12,045 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:33:12,045 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:33:12,045 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:34:12,119 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:34:12,119 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:34:12,119 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:35:12,160 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:35:12,160 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:35:12,160 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:36:12,289 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:36:12,289 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:36:12,290 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:37:12,335 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:37:12,335 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:37:12,336 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:38:12,341 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:38:12,341 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:38:12,341 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:39:12,366 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:39:12,366 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:39:12,366 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:40:12,393 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:40:12,393 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 04:40:12,394 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:40:12,395 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:40:12,397 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45693635370209595
      y: -0.010225682343676521
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:40:12,753 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45693635370209595
      y: -0.010225682343676521
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:40:13,022 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 04:40:13,022 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:40:13,024 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:40:13,024 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:40:13,024 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:40:13,207 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:40:13,209 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:40:13,262 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:40:13,263 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 04:40:13,263 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:40:13,263 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:40:13,294 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:40:13,295 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 04:40:13,318 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:40:13,335 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 04:40:13,335 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 04:40:13,456 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 04:40:13,457 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 04:40:13,457 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 04:40:13,528 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 04:40:13,554 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 04:40:13,554 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 04:40:13,554 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:40:13,555 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:40:13,655 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:40:13,655 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 04:40:13,703 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 04:40:13,731 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 04:40:13,740 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 04:40:13,795 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 04:40:13,951 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:40:13,951 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:40:13,952 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:40:13,996 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:40:13,996 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:40:13,996 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 04:40:13,997 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 04:40:13,997 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 04:40:13,997 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 04:40:13,998 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 04:40:14,021 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:40:14,043 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:40:14,043 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:40:14,043 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 04:40:14,043 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:40:14,341 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 04:40:14,342 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:40:14,343 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 04:40:15,299 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:40:15,299 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:40:15,300 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:40:15,981 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 04:40:15,981 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:40:16,101 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:40:16,101 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:40:16,102 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:40:16,102 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 04:40:16,102 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:40:16,103 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:40:16,114 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:40:16,185 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:40:16,191 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:40:16,192 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 04:42:25,152 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0046.ibw (each dataset is a channel).
2025-07-25 04:42:25,226 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 04:42:25,226 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:42:25,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:42:25,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:42:25,227 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:42:25,357 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 141, R: 139
2025-07-25 04:42:25,357 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 141, R: 139
2025-07-25 04:42:25,359 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0017981766833892294
2025-07-25 04:42:25,391 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.59797135e-07  7.05023817e-09] m.
2025-07-25 04:42:25,391 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-4.65951546e-12 -2.79123367e-12] m / s.
2025-07-25 04:42:25,392 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 04:42:25,392 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:42:25,478 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:42:25,484 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:42:25,668 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:42:25,670 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:42:25,731 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:42:25,731 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:42:25,736 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:42:25,760 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:42:25,832 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:42:25,832 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:42:25,914 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 04:42:25,915 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:42:25,937 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:42:26,015 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:42:26,162 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 04:42:26,163 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:42:26,189 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:42:26,196 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:42:26,408 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:42:26,408 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:42:26,437 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:42:26,437 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:42:26,437 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 04:42:26,438 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:42:26,438 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:42:26,438 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:42:26,469 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:42:26,500 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:42:26,501 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:42:26,501 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 04:42:26,502 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:42:26,534 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:42:26,535 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:42:26,535 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:42:26,887 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:43:26,521 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:43:26,522 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:43:26,523 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:44:26,587 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:44:26,587 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:44:26,587 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:45:26,722 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:45:26,722 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:45:26,722 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:46:26,807 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:46:26,807 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:46:26,807 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:47:26,843 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:47:26,843 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:47:26,843 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:48:26,903 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:48:26,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:48:26,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:49:27,029 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:49:27,029 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:49:27,031 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:50:27,064 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:50:27,064 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:50:27,065 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:51:27,073 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:51:27,073 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:51:27,073 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:52:27,120 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:52:27,121 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:52:27,122 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:53:27,150 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:53:27,151 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:53:27,151 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:54:27,283 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:54:27,284 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:54:27,284 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:55:27,383 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:55:27,383 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 04:55:27,383 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:55:27,554 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:55:27,556 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46344603767648457
      y: -0.004864401350914112
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:55:27,616 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.46344603767648457
      y: -0.004864401350914112
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 04:55:27,883 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 04:55:27,884 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:55:27,885 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:55:27,885 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:55:27,886 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:55:28,071 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:55:28,072 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:55:28,154 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:55:28,154 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 04:55:28,154 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:55:28,170 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:55:28,170 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 04:55:28,170 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:55:28,178 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:55:28,195 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 04:55:28,195 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 04:55:28,338 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 04:55:28,339 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 04:55:28,417 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 04:55:28,417 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 04:55:28,417 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:55:28,418 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:55:28,420 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 04:55:28,420 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 04:55:28,518 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:55:28,518 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 04:55:28,599 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 04:55:28,617 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 04:55:28,686 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 04:55:28,686 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 04:55:28,848 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:55:28,849 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:55:28,849 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:55:28,849 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:55:28,849 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:55:28,849 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:55:28,850 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 04:55:28,850 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:55:28,850 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:55:28,850 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 04:55:28,850 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 04:55:28,850 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 04:55:28,851 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 04:55:28,851 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 04:55:28,898 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:55:29,203 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 04:55:29,204 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:55:29,204 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 04:55:30,146 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 04:55:30,147 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 04:55:30,147 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 04:55:30,901 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 04:55:30,902 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:55:30,959 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:55:30,959 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:55:30,960 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:55:30,960 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:55:30,960 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 04:55:30,968 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:55:30,968 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:55:30,968 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 04:55:30,968 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:55:31,003 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:57:39,372 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0047.ibw (each dataset is a channel).
2025-07-25 04:57:39,390 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 04:57:39,391 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:57:39,391 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:57:39,391 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:57:39,392 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 04:57:39,414 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 128, R: 147
2025-07-25 04:57:39,415 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 128, R: 147
2025-07-25 04:57:39,416 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.002411275480180563
2025-07-25 04:57:39,503 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.56560948e-07  2.24688868e-09] m.
2025-07-25 04:57:39,503 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 3.53729859e-12 -5.25027788e-12] m / s.
2025-07-25 04:57:39,504 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 04:57:39,505 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:57:39,505 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:57:39,505 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:57:39,761 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:57:39,771 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:57:39,771 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:57:39,783 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:57:39,892 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 04:57:39,892 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 04:57:39,993 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 04:57:39,993 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 04:57:40,009 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 04:57:40,038 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:57:40,038 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:57:40,060 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:57:40,241 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 04:57:40,302 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:57:40,302 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:57:40,342 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:57:40,475 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:57:40,475 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 04:57:40,476 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 04:57:40,477 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 04:57:40,477 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 04:57:40,477 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 04:57:40,477 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 04:57:40,567 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 04:57:40,567 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 04:57:40,567 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 04:57:40,568 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 04:57:40,568 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:57:40,568 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:57:40,568 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:57:40,675 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 04:57:40,675 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 04:57:40,675 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 04:58:40,598 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:58:40,598 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:58:40,599 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 04:59:40,672 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 04:59:40,673 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 04:59:40,673 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:00:40,772 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:00:40,773 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:00:40,773 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:01:40,875 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:01:40,875 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:01:40,876 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:02:40,877 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:02:40,877 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:02:40,879 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:03:40,977 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:03:40,979 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:03:40,979 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:04:41,074 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:04:41,074 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:04:41,076 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:05:41,204 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:05:41,205 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:05:41,205 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:06:41,290 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:06:41,290 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:06:41,292 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:07:41,370 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:07:41,371 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:07:41,371 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:08:41,508 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:08:41,508 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:08:41,508 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:09:41,582 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:09:41,583 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:09:41,584 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:10:41,631 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:10:41,631 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 05:10:41,632 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:10:41,678 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:10:41,679 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45379352154525288
      y: 0.0018606969141129587
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:10:41,943 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.45379352154525288
      y: 0.0018606969141129587
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:10:42,209 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 05:10:42,209 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:10:42,209 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:10:42,211 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:10:42,211 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:10:42,396 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:10:42,396 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:10:42,396 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:10:42,397 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 05:10:42,397 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:10:42,417 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:10:42,470 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:10:42,478 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:10:42,478 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 05:10:42,519 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 05:10:42,520 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 05:10:42,638 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 05:10:42,639 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 05:10:42,640 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 05:10:42,681 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 05:10:42,737 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 05:10:42,738 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 05:10:42,738 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:10:42,738 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:10:42,840 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:10:42,841 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 05:10:42,888 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 05:10:42,901 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 05:10:42,924 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 05:10:42,946 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 05:10:43,136 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:10:43,137 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:10:43,137 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:10:43,137 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:10:43,139 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 05:10:43,139 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:10:43,165 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:10:43,165 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:10:43,165 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 05:10:43,165 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 05:10:43,165 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 05:10:43,166 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 05:10:43,166 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 05:10:43,204 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:10:43,212 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:10:43,525 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 05:10:43,525 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:10:43,526 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 05:10:44,487 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:10:44,487 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:10:44,488 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:10:45,180 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 05:10:45,180 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:10:45,301 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:10:45,302 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:10:45,302 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:10:45,303 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 05:10:45,303 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:10:45,303 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:10:45,303 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:10:45,304 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 05:10:45,342 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:10:45,381 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:12:54,249 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0048.ibw (each dataset is a channel).
2025-07-25 05:12:54,268 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 05:12:54,268 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:12:54,268 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:12:54,269 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:12:54,269 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:12:54,442 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 145, R: 145
2025-07-25 05:12:54,442 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 145, R: 145
2025-07-25 05:12:54,444 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.002127267711570137
2025-07-25 05:12:54,474 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.45452726e-07 -4.75824422e-09] m.
2025-07-25 05:12:54,474 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 1.21492263e-11 -7.66161763e-12] m / s.
2025-07-25 05:12:54,475 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 05:12:54,476 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:12:54,476 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:12:54,476 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:12:54,730 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:12:54,740 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:12:54,740 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:12:54,748 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:12:54,749 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:12:54,749 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:12:54,850 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:12:54,850 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:12:54,977 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 05:12:55,005 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:12:55,029 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:12:55,211 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 05:12:55,270 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:12:55,271 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:12:55,311 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:12:55,461 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:12:55,462 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:12:55,462 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:12:55,535 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:12:55,536 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:12:55,536 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:12:55,536 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 05:12:55,536 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:12:55,536 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:12:55,536 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:12:55,539 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:12:55,539 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:12:55,539 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:12:55,551 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:12:55,552 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:12:55,552 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 05:12:55,552 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:13:55,680 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:13:55,680 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:13:55,680 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:14:55,758 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:14:55,759 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:14:55,759 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:15:55,781 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:15:55,781 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:15:55,781 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:16:55,912 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:16:55,912 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:16:55,913 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:17:55,990 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:17:55,990 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:17:55,990 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:18:56,094 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:18:56,094 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:18:56,094 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:19:56,124 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:19:56,125 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:19:56,125 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:20:56,275 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:20:56,275 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:20:56,276 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:21:56,346 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:21:56,346 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:21:56,348 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:22:56,384 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:22:56,386 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:22:56,386 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:23:56,434 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:23:56,434 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:23:56,434 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:24:56,581 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:24:56,581 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:24:56,582 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:25:56,638 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:25:56,638 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 05:25:56,638 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:25:56,808 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:25:56,809 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.43593781191416026
      y: 0.010758596427048496
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:25:57,027 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.43593781191416026
      y: 0.010758596427048496
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:25:57,308 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 05:25:57,308 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:25:57,308 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:25:57,309 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:25:57,309 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:25:57,491 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:25:57,492 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:25:57,493 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:25:57,493 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:25:57,517 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:25:57,517 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 05:25:57,517 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:25:57,563 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:25:57,563 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 05:25:57,621 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 05:25:57,621 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 05:25:57,723 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 05:25:57,724 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 05:25:57,751 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 05:25:57,774 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 05:25:57,852 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 05:25:57,852 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 05:25:57,853 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:25:57,853 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:25:57,954 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:25:57,955 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 05:25:57,972 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 05:25:57,999 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 05:25:58,014 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 05:25:58,054 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 05:25:58,219 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:25:58,219 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:25:58,219 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:25:58,263 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:25:58,263 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:25:58,263 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 05:25:58,263 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 05:25:58,263 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 05:25:58,264 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 05:25:58,264 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 05:25:58,279 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:25:58,294 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:25:58,294 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:25:58,294 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 05:25:58,294 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:25:58,636 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 05:25:58,636 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:25:58,637 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 05:25:59,902 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:25:59,902 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:25:59,903 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:26:00,622 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 05:26:00,622 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:26:00,723 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:26:00,723 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:26:00,724 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:26:00,724 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:26:00,724 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 05:26:00,737 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:26:00,761 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:26:00,761 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:26:00,761 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 05:26:00,761 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:28:09,585 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0049.ibw (each dataset is a channel).
2025-07-25 05:28:09,604 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 05:28:09,604 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:28:09,606 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:28:09,606 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:28:09,606 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:28:09,839 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 125, R: 136
2025-07-25 05:28:09,839 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 125, R: 136
2025-07-25 05:28:09,840 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0027368690876754336
2025-07-25 05:28:09,869 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.41080006e-07 -5.39778522e-09] m.
2025-07-25 05:28:09,870 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 4.77663702e-12 -6.98616663e-13] m / s.
2025-07-25 05:28:09,871 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 05:28:09,872 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:28:09,872 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:28:09,958 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:28:10,114 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:28:10,115 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:28:10,140 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:28:10,141 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:28:10,141 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:28:10,216 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:28:10,216 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:28:10,239 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:28:10,392 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 05:28:10,393 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:28:10,403 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:28:10,403 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:28:10,640 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 05:28:10,669 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:28:10,669 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:28:10,679 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:28:10,889 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:28:10,889 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:28:10,889 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:28:10,890 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:28:10,890 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 05:28:10,890 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:28:10,904 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:28:10,904 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:28:10,904 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:28:10,934 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-25 05:28:10,934 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:28:10,934 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 05:28:10,934 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:28:10,934 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:28:10,934 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:28:10,959 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:29:10,967 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:29:10,967 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:29:10,967 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:30:11,110 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:30:11,110 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:30:11,110 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:31:11,214 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:31:11,215 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:31:11,215 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:32:11,351 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:32:11,352 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:32:11,352 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:33:11,357 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:33:11,357 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:33:11,357 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:34:11,413 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:34:11,413 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:34:11,413 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:35:11,467 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:35:11,467 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:35:11,467 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:36:11,597 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:36:11,597 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:36:11,597 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:37:11,753 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:37:11,754 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:37:11,754 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:38:11,800 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:38:11,800 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:38:11,800 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:39:11,950 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:39:11,950 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:39:11,950 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:40:11,957 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:40:11,957 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:40:11,958 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:41:12,092 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:41:12,092 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 05:41:12,092 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:41:12,247 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:41:12,248 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4373390842846917
      y: 0.0059449212821614528
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:41:12,558 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4373390842846917
      y: 0.0059449212821614528
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:41:12,841 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 05:41:12,841 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:41:12,841 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:41:12,841 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:41:12,842 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:41:13,022 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:41:13,023 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:41:13,025 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:41:13,035 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:41:13,035 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 05:41:13,035 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:41:13,044 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:41:13,097 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:41:13,097 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 05:41:13,154 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 05:41:13,155 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 05:41:13,255 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 05:41:13,256 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 05:41:13,285 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 05:41:13,327 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 05:41:13,374 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 05:41:13,374 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 05:41:13,374 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:41:13,374 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:41:13,475 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:41:13,475 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 05:41:13,493 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 05:41:13,493 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 05:41:13,520 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 05:41:13,553 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 05:41:13,728 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:41:13,729 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:41:13,766 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:41:13,773 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:41:13,773 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:41:13,773 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 05:41:13,773 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:41:13,788 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:41:13,788 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:41:13,788 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 05:41:13,788 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 05:41:13,788 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 05:41:13,788 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 05:41:13,790 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 05:41:13,819 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:41:14,162 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 05:41:14,162 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:41:14,163 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 05:41:15,113 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:41:15,113 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:41:15,114 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:41:15,819 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 05:41:15,820 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:41:15,925 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:41:15,925 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:41:15,926 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:41:15,926 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:41:15,926 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:41:15,927 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 05:41:15,927 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:41:16,012 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:41:16,012 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 05:41:16,012 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:43:25,019 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0050.ibw (each dataset is a channel).
2025-07-25 05:43:25,087 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 05:43:25,088 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:43:25,088 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:43:25,088 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:43:25,088 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:43:25,112 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 138, R: 134
2025-07-25 05:43:25,112 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 138, R: 134
2025-07-25 05:43:25,115 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003619211027335863
2025-07-25 05:43:25,145 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.61314795e-07 -1.11588936e-09] m.
2025-07-25 05:43:25,145 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-2.21100364e-11  4.67871801e-12] m / s.
2025-07-25 05:43:25,146 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 05:43:25,146 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:43:25,180 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:43:25,195 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:43:25,400 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:43:25,421 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:43:25,443 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:43:25,459 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:43:25,579 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:43:25,580 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:43:25,651 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 05:43:25,681 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:43:25,681 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:43:25,681 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:43:25,704 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:43:25,711 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:43:25,726 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:43:25,917 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 05:43:25,975 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:43:25,984 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:43:25,991 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:43:26,167 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:43:26,167 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:43:26,167 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:43:26,168 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:43:26,168 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 05:43:26,168 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:43:26,241 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:43:26,241 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:43:26,241 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 05:43:26,241 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:43:26,241 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:43:26,241 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:43:26,257 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:43:26,265 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:43:26,366 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:43:26,366 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:44:26,290 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:44:26,292 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:44:26,292 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:45:26,313 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:45:26,313 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:45:26,314 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:46:26,403 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:46:26,403 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:46:26,404 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:47:26,567 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:47:26,568 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:47:26,568 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:48:26,636 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:48:26,636 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:48:26,637 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:49:26,790 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:49:26,791 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:49:26,791 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:50:26,962 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:50:26,962 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:50:26,962 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:51:26,984 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:51:26,985 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:51:26,985 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:52:27,111 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:52:27,112 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:52:27,112 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:53:27,198 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:53:27,198 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:53:27,199 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:54:27,318 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:54:27,318 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:54:27,318 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:55:27,323 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:55:27,324 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:55:27,324 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:56:27,365 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:56:27,365 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 05:56:27,367 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:56:27,368 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:56:27,370 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.47862928926710907
      y: -0.0025480410213978362
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:56:27,540 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.47862928926710907
      y: -0.0025480410213978362
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 05:56:27,805 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 05:56:27,805 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:56:27,806 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:56:27,806 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:56:27,806 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:56:27,988 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:56:27,988 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:56:27,990 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:56:27,990 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 05:56:27,990 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:56:27,990 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:56:27,991 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:56:28,076 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:56:28,076 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 05:56:28,115 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 05:56:28,116 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 05:56:28,241 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 05:56:28,262 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 05:56:28,270 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 05:56:28,332 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 05:56:28,333 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 05:56:28,333 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:56:28,333 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:56:28,340 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 05:56:28,434 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:56:28,434 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 05:56:28,481 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 05:56:28,481 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 05:56:28,525 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 05:56:28,549 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 05:56:28,731 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:56:28,731 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:56:28,744 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:56:28,744 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:56:28,744 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 05:56:28,744 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 05:56:28,744 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 05:56:28,745 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 05:56:28,745 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 05:56:28,759 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:56:28,759 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:56:28,759 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 05:56:28,759 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:56:28,790 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:56:28,830 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:56:29,120 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 05:56:29,121 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:56:29,122 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 05:56:30,075 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 05:56:30,075 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 05:56:30,076 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 05:56:30,839 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 05:56:30,840 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:56:30,896 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:56:30,896 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:56:30,896 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:56:30,897 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:56:30,898 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 05:56:30,937 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:56:30,937 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 05:56:30,937 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:56:30,941 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:56:30,983 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:58:39,985 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0051.ibw (each dataset is a channel).
2025-07-25 05:58:40,006 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 05:58:40,007 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:58:40,007 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:58:40,007 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:58:40,008 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 05:58:40,206 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 141, R: 142
2025-07-25 05:58:40,206 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 141, R: 142
2025-07-25 05:58:40,208 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0025990750209210745
2025-07-25 05:58:40,239 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.05404433e-07 -1.66343732e-09] m.
2025-07-25 05:58:40,239 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 6.11066341e-11 -5.98436700e-13] m / s.
2025-07-25 05:58:40,240 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 05:58:40,240 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:58:40,240 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:58:40,485 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 05:58:40,487 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 05:58:40,547 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:58:40,549 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:58:40,549 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
race
2025-07-25 05:58:40,587 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 05:58:40,587 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 05:58:40,790 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 05:58:40,804 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:58:40,820 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:58:40,827 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:58:41,039 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 05:58:41,066 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:58:41,083 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:58:41,108 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:58:41,271 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:58:41,272 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 05:58:41,272 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 05:58:41,272 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 05:58:41,273 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 05:58:41,301 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 05:58:41,301 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 05:58:41,301 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 05:58:41,301 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 05:58:41,332 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 05:58:41,332 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 05:58:41,332 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 05:58:41,332 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:58:41,332 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:58:41,332 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 05:58:41,348 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 05:58:41,970 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 05:59:41,451 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 05:59:41,451 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 05:59:41,451 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:00:41,596 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:00:41,596 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:00:41,597 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:01:41,674 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:01:41,674 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:01:41,675 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:02:41,796 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:02:41,798 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:02:41,798 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:03:41,904 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:03:41,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:03:41,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:04:42,034 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:04:42,035 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:04:42,035 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:05:42,146 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:05:42,146 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:05:42,147 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:06:42,276 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:06:42,276 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:06:42,277 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:07:42,381 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:07:42,382 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:07:42,382 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:08:42,455 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:08:42,455 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:08:42,455 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:09:42,509 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:09:42,509 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:09:42,509 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:10:42,642 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:10:42,642 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:10:42,644 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:11:42,743 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:11:42,744 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 06:11:42,744 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:11:43,039 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:11:43,043 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.35750819413661139
      y: 0.00213250041680631
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:11:43,227 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.35750819413661139
      y: 0.00213250041680631
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:11:43,490 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 06:11:43,491 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:11:43,491 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:11:43,491 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:11:43,492 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:11:43,669 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:11:43,671 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:11:43,672 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:11:43,684 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:11:43,684 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 06:11:43,684 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:11:43,740 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:11:43,761 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:11:43,761 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 06:11:43,803 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 06:11:43,803 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 06:11:44,013 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 06:11:44,019 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 06:11:44,019 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 06:11:44,020 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 06:11:44,020 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:11:44,020 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:11:44,026 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 06:11:44,103 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 06:11:44,120 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:11:44,120 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 06:11:44,259 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 06:11:44,261 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 06:11:44,289 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 06:11:44,298 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 06:11:44,509 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:11:44,509 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:11:44,523 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:11:44,554 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:11:44,554 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:11:44,554 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 06:11:44,554 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 06:11:44,554 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 06:11:44,555 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 06:11:44,555 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 06:11:44,578 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:11:44,601 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:11:44,601 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:11:44,601 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 06:11:44,601 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:11:44,805 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 06:11:44,805 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:11:44,806 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 06:11:45,764 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:11:45,764 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:11:45,765 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:11:46,461 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 06:11:46,461 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:11:46,564 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:11:46,564 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:11:46,564 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:11:46,564 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:11:46,564 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 06:11:46,566 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:11:46,566 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:11:46,566 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 06:11:46,584 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:11:46,591 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:13:55,280 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0052.ibw (each dataset is a channel).
2025-07-25 06:13:55,300 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 06:13:55,300 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:13:55,300 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:13:55,300 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:13:55,300 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:13:55,370 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 149, R: 144
2025-07-25 06:13:55,370 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 149, R: 144
2025-07-25 06:13:55,373 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003153352885379018
2025-07-25 06:13:55,406 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.00206945e-07 -7.73077696e-09] m.
2025-07-25 06:13:55,407 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 5.67409587e-12 -6.62371260e-12] m / s.
2025-07-25 06:13:55,409 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 06:13:55,409 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:13:55,450 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:13:55,466 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:13:55,676 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:13:55,690 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:13:55,713 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:13:55,729 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:13:55,786 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:13:55,786 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:13:55,887 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:13:55,887 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:13:55,923 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 06:13:55,972 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:13:55,980 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:13:55,995 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:13:56,169 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 06:13:56,243 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:13:56,251 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:13:56,259 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:13:56,419 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:13:56,419 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:13:56,420 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:13:56,420 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:13:56,421 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:13:56,421 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 06:13:56,423 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:13:56,423 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:13:56,423 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:13:56,446 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:13:56,446 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:13:56,446 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 06:13:56,446 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:13:56,509 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:13:56,572 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:13:56,572 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:13:56,572 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:14:56,522 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:14:56,522 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:14:56,522 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:15:56,630 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:15:56,630 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:15:56,632 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:16:56,785 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:16:56,785 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:16:56,785 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:17:56,838 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:17:56,838 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:17:56,839 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:18:56,949 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:18:56,949 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:18:56,950 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:19:56,954 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:19:56,954 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:19:56,954 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:20:57,042 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:20:57,042 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:20:57,043 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:21:57,205 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:21:57,205 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:21:57,205 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:22:57,239 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:22:57,240 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:22:57,240 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:23:57,259 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:23:57,260 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:23:57,260 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:24:57,425 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:24:57,425 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:24:57,425 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:25:57,492 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:25:57,493 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:25:57,493 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:26:57,637 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:26:57,637 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 06:26:57,637 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:26:57,778 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:26:57,781 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.39576667756083944
      y: 0.012914167847325941
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:26:57,919 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.39576667756083944
      y: 0.012914167847325941
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:26:58,201 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 06:26:58,202 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:26:58,202 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:26:58,203 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:26:58,203 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:26:58,385 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:26:58,385 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:26:58,385 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:26:58,387 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:26:58,387 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 06:26:58,387 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:26:58,456 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:26:58,456 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 06:26:58,464 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:26:58,511 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 06:26:58,512 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 06:26:58,631 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 06:26:58,633 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 06:26:58,643 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 06:26:58,722 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 06:26:58,731 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 06:26:58,731 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 06:26:58,731 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:26:58,731 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:26:58,832 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:26:58,832 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 06:26:58,883 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 06:26:58,883 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 06:26:58,909 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 06:26:58,918 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 06:26:59,113 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:26:59,113 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:26:59,113 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:26:59,114 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:26:59,114 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 06:26:59,115 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:26:59,143 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:26:59,143 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:26:59,143 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 06:26:59,143 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 06:26:59,143 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 06:26:59,144 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 06:26:59,144 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 06:26:59,174 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:26:59,199 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:26:59,523 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 06:26:59,523 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:26:59,523 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 06:27:00,832 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:27:00,832 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:27:00,833 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:27:01,627 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 06:27:01,627 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:27:01,628 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:27:01,628 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:27:01,628 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:27:01,629 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:27:01,629 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 06:27:01,629 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 06:27:01,629 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:27:01,640 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:27:01,711 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:27:01,728 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:29:10,706 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0053.ibw (each dataset is a channel).
2025-07-25 06:29:10,725 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 06:29:10,725 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:29:10,725 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:29:10,725 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:29:10,726 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:29:10,924 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 146
2025-07-25 06:29:10,924 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 146
2025-07-25 06:29:10,926 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0033497688961493114
2025-07-25 06:29:10,957 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.22083153e-07 -1.58993286e-08] m.
2025-07-25 06:29:10,957 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-2.39133826e-11 -8.92923040e-12] m / s.
2025-07-25 06:29:10,958 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 06:29:10,959 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:29:10,959 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:29:11,038 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:29:11,206 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:29:11,207 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:29:11,214 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:29:11,226 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:29:11,234 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:29:11,304 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:29:11,308 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:29:11,309 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:29:11,462 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 06:29:11,463 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:29:11,490 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:29:11,515 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:29:11,714 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 06:29:11,724 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:29:11,756 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:29:11,797 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:29:11,962 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:29:11,962 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:29:11,964 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:29:11,976 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:29:11,976 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:29:11,976 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 06:29:11,976 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:29:11,991 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:29:11,993 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:29:11,993 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:29:11,994 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:29:12,022 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:29:12,022 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:29:12,022 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 06:29:12,022 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:29:12,022 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:29:12,023 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:30:12,141 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:30:12,141 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:30:12,143 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:31:12,233 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:31:12,233 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:31:12,233 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:32:12,248 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:32:12,249 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:32:12,249 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:33:12,327 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:33:12,327 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:33:12,328 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:34:12,482 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:34:12,482 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:34:12,482 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:35:12,485 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:35:12,485 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:35:12,485 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:36:12,521 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:36:12,521 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:36:12,521 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:37:12,536 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:37:12,536 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:37:12,537 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:38:12,545 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:38:12,545 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:38:12,546 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:39:12,609 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:39:12,609 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:39:12,609 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:40:12,612 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:40:12,612 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:40:12,613 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:41:12,690 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:41:12,690 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:41:12,690 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:42:12,850 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:42:12,850 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 06:42:12,850 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:42:13,005 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:42:13,007 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.44080650313262887
      y: 0.022890606616883118
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:42:13,195 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.44080650313262887
      y: 0.022890606616883118
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:42:13,460 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 06:42:13,461 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:42:13,461 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:42:13,461 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:42:13,462 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:42:13,642 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:42:13,644 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:42:13,645 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:42:13,686 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:42:13,686 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 06:42:13,686 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:42:13,711 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:42:13,733 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:42:13,733 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 06:42:13,775 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 06:42:13,775 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 06:42:13,893 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 06:42:13,922 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 06:42:13,985 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 06:42:13,994 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 06:42:13,996 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 06:42:13,996 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 06:42:13,996 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:42:13,996 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:42:14,097 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:42:14,097 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 06:42:14,147 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 06:42:14,147 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 06:42:14,147 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 06:42:14,189 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 06:42:14,394 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:42:14,395 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:42:14,407 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:42:14,407 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:42:14,407 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 06:42:14,407 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 06:42:14,407 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 06:42:14,408 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 06:42:14,408 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 06:42:14,438 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:42:14,438 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:42:14,438 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 06:42:14,438 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:42:14,446 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:42:14,453 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:42:14,797 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 06:42:14,797 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:42:14,797 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 06:42:15,747 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:42:15,748 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:42:15,748 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:42:16,504 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 06:42:16,505 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:42:16,544 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:42:16,544 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:42:16,544 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:42:16,545 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 06:42:16,572 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:42:16,572 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:42:16,572 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 06:42:16,572 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:42:16,606 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:42:16,613 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:44:25,543 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0054.ibw (each dataset is a channel).
2025-07-25 06:44:25,562 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 06:44:25,562 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:44:25,562 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:44:25,562 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:44:25,562 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:44:25,705 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 137, R: 143
2025-07-25 06:44:25,706 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 137, R: 143
2025-07-25 06:44:25,707 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003509341647574509
2025-07-25 06:44:25,744 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.15643408e-07 -1.81979774e-08] m.
2025-07-25 06:44:25,744 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 7.03850711e-12 -2.51237522e-12] m / s.
2025-07-25 06:44:25,745 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 06:44:25,746 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:44:25,783 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:44:25,840 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:44:26,005 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:44:26,006 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:44:26,006 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:44:26,048 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:44:26,057 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:44:26,057 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:44:26,158 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:44:26,158 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:44:26,252 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 06:44:26,281 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:44:26,305 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:44:26,312 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:44:26,500 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 06:44:26,547 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:44:26,563 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:44:26,586 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:44:26,752 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:44:26,752 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:44:26,752 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:44:26,752 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:44:26,752 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:44:26,754 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 06:44:26,754 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:44:26,813 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:44:26,829 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:44:26,829 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:44:26,829 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 06:44:26,829 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:44:26,829 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:44:26,830 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:44:26,831 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:44:26,831 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:44:26,831 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:45:26,949 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:45:26,949 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:45:26,950 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:46:27,043 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:46:27,043 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:46:27,044 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:47:27,078 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:47:27,078 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:47:27,079 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:48:27,231 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:48:27,231 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:48:27,231 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:49:27,235 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:49:27,235 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:49:27,235 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:50:27,266 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:50:27,266 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:50:27,266 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:51:27,284 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:51:27,285 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:51:27,285 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:52:27,322 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:52:27,322 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:52:27,322 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:53:27,431 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:53:27,431 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:53:27,431 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:54:27,564 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:54:27,564 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:54:27,565 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:55:27,644 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:55:27,644 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:55:27,644 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:56:27,681 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:56:27,682 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:56:27,682 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:57:27,822 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:57:27,822 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 06:57:27,822 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:57:27,930 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:57:27,933 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.41013253138894834
      y: 0.020165069293728615
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:57:28,195 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.41013253138894834
      y: 0.020165069293728615
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 06:57:28,451 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 06:57:28,452 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:57:28,452 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:57:28,452 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:57:28,453 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:57:28,635 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:57:28,635 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:57:28,635 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:57:28,707 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg

2025-07-25 06:57:28,707 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 06:57:28,707 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 06:57:28,707 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:57:28,717 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:57:28,766 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 06:57:28,766 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 06:57:28,887 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 06:57:28,888 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 06:57:28,895 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 06:57:28,974 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 06:57:28,983 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 06:57:28,983 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 06:57:28,983 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:57:28,983 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:57:29,085 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:57:29,085 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 06:57:29,132 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 06:57:29,132 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 06:57:29,162 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 06:57:29,170 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 06:57:29,366 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:57:29,366 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:57:29,394 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:57:29,394 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:57:29,394 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 06:57:29,394 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 06:57:29,394 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 06:57:29,394 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 06:57:29,395 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 06:57:29,426 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:57:29,441 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:57:29,441 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:57:29,442 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 06:57:29,442 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:57:29,450 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:57:29,771 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 06:57:29,771 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:57:29,771 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 06:57:30,733 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 06:57:30,734 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 06:57:30,735 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 06:57:31,571 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 06:57:31,572 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:57:31,572 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:57:31,573 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:57:31,573 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:57:31,573 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 06:57:31,631 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:57:31,654 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:57:31,670 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:57:31,670 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 06:57:31,670 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:57:31,672 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 06:59:40,385 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0055.ibw (each dataset is a channel).
2025-07-25 06:59:40,455 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 06:59:40,455 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:59:40,455 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:59:40,456 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:59:40,456 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 06:59:40,481 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 140
2025-07-25 06:59:40,481 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 140
2025-07-25 06:59:40,482 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0037241810463540183
2025-07-25 06:59:40,512 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.23826240e-07 -1.71222606e-08] m.
2025-07-25 06:59:40,512 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-8.94283746e-12  1.17562737e-12] m / s.
2025-07-25 06:59:40,513 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 06:59:40,514 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:59:40,559 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:59:40,567 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:59:40,780 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:59:40,781 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:59:40,825 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:59:40,848 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:59:40,943 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 06:59:40,944 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 06:59:41,027 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 06:59:41,042 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:59:41,044 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 06:59:41,044 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 06:59:41,044 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:59:41,090 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:59:41,129 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 06:59:41,277 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 06:59:41,279 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:59:41,307 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:59:41,353 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:59:41,527 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:59:41,528 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 06:59:41,528 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 06:59:41,529 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 06:59:41,529 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 06:59:41,529 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 06:59:41,565 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 06:59:41,571 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 06:59:41,618 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 06:59:41,618 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 06:59:41,618 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 06:59:41,618 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 06:59:41,618 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 06:59:41,619 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 06:59:41,729 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 06:59:41,729 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:00:41,715 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:00:41,716 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:00:41,716 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:01:41,828 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:01:41,828 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:01:41,828 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:02:41,919 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:02:41,919 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:02:41,919 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:03:41,931 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:03:41,931 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:03:41,931 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:04:42,054 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:04:42,055 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:04:42,055 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:05:42,134 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:05:42,135 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:05:42,135 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:06:42,300 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:06:42,300 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:06:42,302 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:07:42,338 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:07:42,338 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:07:42,339 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:08:42,468 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:08:42,469 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:08:42,469 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:09:42,495 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:09:42,495 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:09:42,495 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:10:42,606 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:10:42,606 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:10:42,608 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:11:42,624 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:11:42,624 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:11:42,624 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:12:42,772 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:12:42,772 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 07:12:42,772 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:12:42,958 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:12:42,961 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.43082825258805285
      y: 0.016201774415385693
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:12:43,459 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.43082825258805285
      y: 0.016201774415385693
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:12:43,727 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 07:12:43,728 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:12:43,728 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:12:43,728 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:12:43,728 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:12:43,911 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:12:43,912 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:12:43,912 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:12:43,913 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 07:12:43,913 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:12:43,913 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:12:43,966 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:12:43,996 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:12:43,997 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 07:12:44,038 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 07:12:44,038 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 07:12:44,156 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 07:12:44,157 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 07:12:44,193 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 07:12:44,232 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 07:12:44,258 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 07:12:44,258 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 07:12:44,258 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:12:44,258 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:12:44,359 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:12:44,359 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 07:12:44,409 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 07:12:44,420 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 07:12:44,475 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 07:12:44,498 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 07:12:44,661 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:12:44,661 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:12:44,683 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:12:44,683 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:12:44,683 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 07:12:44,683 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 07:12:44,683 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 07:12:44,684 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 07:12:44,684 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 07:12:44,699 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:12:44,699 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:12:44,699 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 07:12:44,699 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:12:44,754 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:12:44,761 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:12:45,045 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 07:12:45,046 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:12:45,046 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 07:12:46,007 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:12:46,008 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:12:46,008 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:12:46,755 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 07:12:46,755 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:12:46,814 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:12:46,814 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:12:46,816 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:12:46,816 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 07:12:46,816 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:12:46,817 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 07:12:46,817 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:12:46,839 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:12:46,856 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:12:46,912 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:14:55,194 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0056.ibw (each dataset is a channel).
2025-07-25 07:14:55,214 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 07:14:55,214 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:14:55,214 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:14:55,214 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:14:55,214 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:14:55,298 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 138, R: 134
2025-07-25 07:14:55,299 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 138, R: 134
2025-07-25 07:14:55,300 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0014686471519747206
2025-07-25 07:14:55,331 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-3.93632840e-07 -1.43921647e-08] m.
2025-07-25 07:14:55,331 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [3.29923682e-11 2.98317934e-12] m / s.
2025-07-25 07:14:55,333 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 07:14:55,334 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:14:55,396 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:14:55,420 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:14:55,604 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:14:55,607 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:14:55,677 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:14:55,684 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:14:55,711 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:14:55,711 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:14:55,812 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:14:55,812 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:14:55,866 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 07:14:55,873 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:14:55,951 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:14:55,960 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:14:56,111 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 07:14:56,111 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:14:56,140 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:14:56,364 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:14:56,366 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:14:56,366 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:14:56,367 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:14:56,367 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 07:14:56,367 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:14:56,388 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:14:56,388 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:14:56,388 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 07:14:56,388 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:14:56,388 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:14:56,388 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:14:56,396 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:14:56,403 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:14:56,498 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:14:56,498 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:14:56,498 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:15:56,502 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:15:56,502 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:15:56,503 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:16:56,593 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:16:56,593 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:16:56,593 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:17:56,674 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:17:56,674 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:17:56,674 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:18:56,766 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:18:56,766 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:18:56,766 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:19:56,863 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:19:56,863 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:19:56,863 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:20:56,983 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:20:56,983 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:20:56,983 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:21:57,146 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:21:57,146 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:21:57,146 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:22:57,269 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:22:57,270 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:22:57,270 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:23:57,372 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:23:57,372 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:23:57,372 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:24:57,410 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:24:57,410 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:24:57,411 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:25:57,437 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:25:57,437 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:25:57,437 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:26:57,531 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:26:57,531 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:26:57,531 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:27:57,689 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:27:57,689 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 07:27:57,689 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:27:57,690 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:27:57,691 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.36781493157332423
      y: 0.012057702088257223
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:27:57,735 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.36781493157332423
      y: 0.012057702088257223
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:27:58,003 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 07:27:58,003 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:27:58,003 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:27:58,003 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:27:58,004 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:27:58,184 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:27:58,185 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:27:58,186 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:27:58,211 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:27:58,258 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:27:58,258 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 07:27:58,258 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:27:58,274 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:27:58,274 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 07:27:58,314 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 07:27:58,314 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 07:27:58,434 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 07:27:58,436 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 07:27:58,469 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 07:27:58,475 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 07:27:58,531 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 07:27:58,532 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 07:27:58,532 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:27:58,532 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:27:58,633 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:27:58,633 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 07:27:58,681 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 07:27:58,693 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 07:27:58,740 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 07:27:58,749 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 07:27:58,915 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:27:58,915 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:27:58,916 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:27:58,958 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:27:58,958 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:27:58,958 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 07:27:58,958 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 07:27:58,958 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 07:27:58,959 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 07:27:58,959 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 07:27:58,989 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:27:58,989 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:27:58,989 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 07:27:58,989 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:27:59,004 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:27:59,317 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 07:27:59,317 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:27:59,318 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 07:28:00,277 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:28:00,278 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:28:00,278 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:28:00,944 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 07:28:00,944 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:28:01,078 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:28:01,078 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:28:01,078 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:28:01,079 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 07:28:01,079 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:28:01,079 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:28:01,079 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:28:01,079 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:28:01,079 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 07:28:01,085 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:30:09,890 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0057.ibw (each dataset is a channel).
2025-07-25 07:30:09,914 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 07:30:09,915 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:30:09,915 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:30:09,915 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:30:09,915 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:30:09,940 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 128, R: 143
2025-07-25 07:30:09,940 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 128, R: 143
2025-07-25 07:30:09,942 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003927375689954835
2025-07-25 07:30:09,970 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.27927722e-07 -5.14207897e-08] m.
2025-07-25 07:30:09,971 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-3.75106244e-11 -4.05007023e-11] m / s.
2025-07-25 07:30:09,972 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 07:30:09,973 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:30:10,016 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:30:10,016 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:30:10,246 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:30:10,259 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:30:10,280 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:30:10,280 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:30:10,402 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:30:10,403 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:30:10,503 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 07:30:10,503 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:30:10,504 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:30:10,538 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:30:10,546 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:30:10,546 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:30:10,749 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 07:30:10,809 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:30:10,809 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:30:10,818 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:30:10,999 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:30:10,999 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:30:11,059 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:30:11,059 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:30:11,059 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 07:30:11,059 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:30:11,074 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:30:11,074 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:30:11,074 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:30:11,074 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 07:30:11,074 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:30:11,074 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:30:11,074 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:30:11,099 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:30:11,202 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:30:11,202 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:30:11,203 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:31:11,172 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:31:11,172 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:31:11,172 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:32:11,175 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:32:11,175 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:32:11,177 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:33:11,302 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:33:11,302 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:33:11,302 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:34:11,380 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:34:11,380 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:34:11,380 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:35:11,506 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:35:11,506 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:35:11,506 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:36:11,509 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:36:11,509 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:36:11,510 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:37:11,682 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:37:11,682 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:37:11,683 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:38:11,685 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:38:11,685 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:38:11,685 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:39:11,717 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:39:11,717 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:39:11,718 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:40:11,791 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:40:11,791 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:40:11,791 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:41:11,929 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:41:11,929 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:41:11,929 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:42:11,986 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:42:11,986 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:42:11,987 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:43:12,040 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:43:12,040 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 07:43:12,041 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:43:12,164 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:43:12,166 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4572889775701835
      y: 0.0831225134427584
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:43:12,648 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.4572889775701835
      y: 0.0831225134427584
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:43:13,259 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 07:43:13,260 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:43:13,260 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:43:13,261 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:43:13,262 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:43:13,444 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:43:13,445 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:43:13,451 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:43:13,451 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 07:43:13,451 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:43:13,498 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:43:13,530 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:43:13,530 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 07:43:13,539 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:43:13,571 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 07:43:13,571 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 07:43:13,689 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 07:43:13,689 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 07:43:13,690 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 07:43:13,764 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 07:43:13,791 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 07:43:13,791 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 07:43:13,791 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:43:13,791 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:43:13,892 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:43:13,892 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 07:43:13,945 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 07:43:13,961 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 07:43:13,968 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 07:43:14,031 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 07:43:14,191 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:43:14,192 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:43:14,192 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:43:14,233 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:43:14,233 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:43:14,233 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 07:43:14,233 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:43:14,233 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 07:43:14,233 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:43:14,233 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 07:43:14,233 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 07:43:14,233 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:43:14,233 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 07:43:14,242 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:43:14,579 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 07:43:14,579 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:43:14,581 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 07:43:15,537 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:43:15,537 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:43:15,538 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:43:16,251 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 07:43:16,251 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:43:16,339 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:43:16,339 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:43:16,339 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:43:16,340 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 07:43:16,340 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:43:16,341 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:43:16,341 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:43:16,341 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 07:43:16,352 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:43:16,406 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:45:24,714 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0058.ibw (each dataset is a channel).
2025-07-25 07:45:24,733 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 07:45:24,733 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:45:24,733 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:45:24,734 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:45:24,734 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 07:45:24,895 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 126, R: 140
2025-07-25 07:45:24,895 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 126, R: 140
2025-07-25 07:45:24,896 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003635164251273634
2025-07-25 07:45:24,928 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.88251147e-07 -9.84270593e-08] m.
2025-07-25 07:45:24,928 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-6.59093681e-11 -5.13590455e-11] m / s.
2025-07-25 07:45:24,929 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 07:45:24,930 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:45:24,930 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:45:24,930 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:45:25,179 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:45:25,192 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:45:25,192 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:45:25,200 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:45:25,217 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:45:25,217 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:45:25,318 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 07:45:25,318 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 07:45:25,409 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 07:45:25,457 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:45:25,457 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:45:25,480 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:45:25,646 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 07:45:25,647 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:45:25,719 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:45:25,719 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:45:25,894 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:45:25,894 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:45:25,896 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:45:25,896 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:45:25,897 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 07:45:25,897 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:45:25,931 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:45:25,984 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:45:25,984 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:45:25,984 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:45:25,985 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 07:45:25,985 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:45:25,985 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:45:25,985 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:45:26,018 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 07:45:26,018 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 07:45:26,018 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:46:26,026 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:46:26,026 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:46:26,028 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:47:26,054 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:47:26,055 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:47:26,055 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:48:26,208 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:48:26,208 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:48:26,208 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:49:26,238 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:49:26,239 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:49:26,239 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:50:26,297 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:50:26,297 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:50:26,297 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:51:26,334 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:51:26,334 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:51:26,335 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:52:26,416 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:52:26,416 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:52:26,418 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:53:26,571 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:53:26,571 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:53:26,572 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:54:26,633 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:54:26,634 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:54:26,634 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:55:26,652 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:55:26,653 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:55:26,653 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:56:26,745 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:56:26,746 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:56:26,746 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:57:26,849 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:57:26,849 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 07:57:26,850 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 07:58:26,911 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 07:58:26,912 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 07:58:26,912 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:58:26,914 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:58:26,916 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.53980857359626189
      y: 0.13860253470230066
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:58:26,917 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.53980857359626189
      y: 0.13860253470230066
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 07:58:27,524 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 07:58:27,525 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:58:27,527 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:58:27,527 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:58:27,528 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:58:27,711 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:58:27,712 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:58:27,713 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:58:27,714 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
_MOVING
2025-07-25 07:58:27,714 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:58:27,725 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:58:27,794 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:58:27,794 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 07:58:27,836 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 07:58:27,836 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 07:58:27,968 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 07:58:27,981 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 07:58:28,005 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 07:58:28,052 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 07:58:28,052 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 07:58:28,054 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 07:58:28,054 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:58:28,059 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 07:58:28,154 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:58:28,154 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 07:58:28,218 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 07:58:28,219 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 07:58:28,247 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 07:58:28,285 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 07:58:28,464 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:58:28,465 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:58:28,479 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 07:58:28,479 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 07:58:28,479 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 07:58:28,479 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 07:58:28,479 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 07:58:28,480 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 07:58:28,480 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 07:58:28,494 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:58:28,494 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 07:58:28,494 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 07:58:28,494 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:58:28,509 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:58:28,566 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:58:28,841 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 07:58:28,842 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 07:58:28,843 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 07:58:29,794 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 07:58:29,796 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 07:58:29,796 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 07:58:30,514 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 07:58:30,514 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 07:58:30,586 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:58:30,587 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 07:58:30,587 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 07:58:30,588 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 07:58:30,588 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 07:58:30,588 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
CANNING
2025-07-25 07:58:30,588 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 07:58:30,589 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 07:58:30,615 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:00:38,977 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0059.ibw (each dataset is a channel).
2025-07-25 08:00:39,051 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 08:00:39,051 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:00:39,051 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:00:39,052 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:00:39,052 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:00:39,076 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 133, R: 136
2025-07-25 08:00:39,076 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 133, R: 136
2025-07-25 08:00:39,078 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004114266285389212
2025-07-25 08:00:39,106 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.96935673e-07 -1.31603855e-07] m.
2025-07-25 08:00:39,106 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-9.4988050e-12 -3.6287521e-11] m / s.
2025-07-25 08:00:39,107 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 08:00:39,140 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:00:39,140 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:00:39,165 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:00:39,369 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:00:39,404 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:00:39,404 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:00:39,444 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:00:39,539 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:00:39,539 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:00:39,623 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 08:00:39,639 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:00:39,639 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:00:39,639 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:00:39,670 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:00:39,670 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:00:39,725 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:00:39,873 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 08:00:39,874 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:00:39,936 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:00:39,936 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:00:40,125 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:00:40,126 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:00:40,150 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:00:40,171 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:00:40,171 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:00:40,171 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 08:00:40,171 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:00:40,203 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:00:40,203 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:00:40,203 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:00:40,203 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 08:00:40,203 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:00:40,203 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:00:40,203 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:00:40,315 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:00:40,315 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:01:40,262 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:01:40,262 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:01:40,262 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:02:40,292 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:02:40,292 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:02:40,292 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:03:40,371 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:03:40,371 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:03:40,372 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:04:40,417 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:04:40,417 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:04:40,417 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:05:40,450 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:05:40,450 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:05:40,451 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:06:40,471 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:06:40,471 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:06:40,471 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:07:40,526 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:07:40,526 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:07:40,526 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:08:40,537 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:08:40,537 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:08:40,537 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:09:40,675 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:09:40,675 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:09:40,676 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:10:40,680 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:10:40,680 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:10:40,680 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:11:40,716 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:11:40,716 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:11:40,716 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:12:40,862 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:12:40,862 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:12:40,862 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:13:40,949 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:13:40,949 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 08:13:40,949 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:13:41,491 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:13:41,493 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.50436895519011848
      y: 0.16000062449178734
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:13:41,976 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.50436895519011848
      y: 0.16000062449178734
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:13:42,243 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 08:13:42,243 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:13:42,243 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:13:42,244 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:13:42,245 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:13:42,428 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:13:42,428 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:13:42,428 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:13:42,429 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 08:13:42,429 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:13:42,429 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:13:42,506 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:13:42,513 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:13:42,513 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 08:13:42,554 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 08:13:42,554 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 08:13:42,671 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 08:13:42,672 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 08:13:42,672 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 08:13:42,701 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 08:13:42,775 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 08:13:42,775 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 08:13:42,775 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:13:42,775 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:13:42,877 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:13:42,878 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 08:13:42,921 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 08:13:42,938 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 08:13:42,948 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 08:13:42,954 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 08:13:43,159 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:13:43,160 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:13:43,189 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:13:43,189 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:13:43,189 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 08:13:43,189 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:13:43,204 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:13:43,204 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:13:43,204 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 08:13:43,204 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 08:13:43,204 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 08:13:43,205 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 08:13:43,205 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 08:13:43,219 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:13:43,227 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:13:43,583 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 08:13:43,584 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:13:43,584 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 08:13:44,840 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:13:44,840 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:13:44,841 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:13:45,544 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 08:13:45,544 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:13:45,644 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:13:45,645 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:13:45,645 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:13:45,646 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 08:13:45,646 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:13:45,646 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:13:45,646 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:13:45,646 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:13:45,646 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:13:45,647 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 08:15:54,401 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0060.ibw (each dataset is a channel).
2025-07-25 08:15:54,421 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 08:15:54,421 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:15:54,421 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:15:54,422 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:15:54,422 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:15:54,563 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 127, R: 138
2025-07-25 08:15:54,563 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 127, R: 138
2025-07-25 08:15:54,565 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004720125270490806
2025-07-25 08:15:54,653 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.29823872e-07 -1.44714076e-07] m.
2025-07-25 08:15:54,653 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-3.59409150e-11 -1.43271246e-11] m / s.
2025-07-25 08:15:54,654 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 08:15:54,655 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:15:54,702 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:15:54,718 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:15:54,898 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:15:54,898 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:15:54,922 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:15:54,929 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:15:54,966 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:15:54,982 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:15:55,000 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:15:55,000 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:15:55,170 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 08:15:55,209 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:15:55,231 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:15:55,247 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:15:55,422 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 08:15:55,489 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:15:55,497 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:15:55,513 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:15:55,674 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:15:55,675 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:15:55,676 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:15:55,676 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:15:55,713 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:15:55,713 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:15:55,713 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 08:15:55,713 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:15:55,760 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:15:55,769 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:15:55,776 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:15:55,776 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:15:55,776 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 08:15:55,776 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:15:55,776 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:15:55,776 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:15:56,336 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:16:55,825 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:16:55,825 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:16:55,825 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:17:55,905 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:17:55,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:17:55,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:18:55,985 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:18:55,985 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:18:55,985 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:19:56,143 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:19:56,143 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:19:56,144 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:20:56,253 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:20:56,253 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:20:56,253 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:21:56,389 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:21:56,390 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:21:56,390 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:22:56,492 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:22:56,493 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:22:56,493 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:23:56,550 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:23:56,550 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:23:56,550 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:24:56,675 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:24:56,675 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:24:56,675 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:25:56,737 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:25:56,737 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:25:56,737 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:26:56,859 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:26:56,859 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:26:56,859 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:27:56,931 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:27:56,931 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:27:56,931 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:28:57,078 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:28:57,078 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 08:28:57,079 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:28:57,093 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:28:57,093 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.55796872553036359
      y: 0.15593345708578571
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:28:57,202 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.55796872553036359
      y: 0.15593345708578571
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:28:57,485 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 08:28:57,485 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:28:57,486 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:28:57,487 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:28:57,487 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:28:57,669 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:28:57,669 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:28:57,669 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:28:57,670 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 08:28:57,670 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:28:57,670 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:28:57,685 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:28:57,755 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:28:57,755 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 08:28:57,795 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 08:28:57,795 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 08:28:57,912 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 08:28:57,913 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 08:28:57,925 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 08:28:57,964 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 08:28:58,012 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 08:28:58,012 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 08:28:58,012 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:28:58,012 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:28:58,114 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:28:58,114 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 08:28:58,145 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 08:28:58,173 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 08:28:58,189 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 08:28:58,245 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 08:28:58,378 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:28:58,378 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:28:58,379 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:28:58,392 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:28:58,392 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:28:58,392 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 08:28:58,392 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:28:58,439 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:28:58,439 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:28:58,439 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 08:28:58,439 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 08:28:58,439 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 08:28:58,454 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:28:58,667 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 08:28:58,667 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 08:28:58,800 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 08:28:58,800 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:28:58,801 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 08:28:59,768 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:28:59,768 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:28:59,769 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:29:00,965 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 08:29:00,965 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:29:00,984 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:29:00,984 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:29:00,997 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:29:00,997 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 08:29:00,997 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:29:01,066 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:29:01,070 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:29:01,076 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:29:01,077 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:29:01,077 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 08:31:09,915 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0061.ibw (each dataset is a channel).
2025-07-25 08:31:09,935 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 08:31:09,936 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:31:09,936 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:31:09,937 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:31:09,937 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:31:10,119 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 135, R: 133
2025-07-25 08:31:10,119 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 135, R: 133
2025-07-25 08:31:10,122 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0034040756387919862
2025-07-25 08:31:10,154 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.45742099e-07 -1.56743155e-07] m.
2025-07-25 08:31:10,154 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.73925383e-11 -1.31431857e-11] m / s.
2025-07-25 08:31:10,155 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 08:31:10,155 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:31:10,156 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:31:10,156 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:31:10,413 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:31:10,414 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:31:10,419 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:31:10,420 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:31:10,420 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:31:10,442 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:31:10,515 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:31:10,515 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:31:10,673 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 08:31:10,683 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:31:10,683 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:31:10,724 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:31:10,921 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 08:31:10,949 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:31:10,949 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:31:11,006 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:31:11,172 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:31:11,172 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:31:11,172 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:31:11,173 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:31:11,173 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:31:11,173 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 08:31:11,173 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:31:11,201 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:31:11,202 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:31:11,202 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:31:11,215 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-25 08:31:11,215 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:31:11,215 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 08:31:11,215 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:31:11,215 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:31:11,215 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:32:11,282 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:32:11,282 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:32:11,282 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:33:11,433 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:33:11,433 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:33:11,436 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:34:11,590 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:34:11,590 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:34:11,591 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:35:11,727 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:35:11,727 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:35:11,729 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:36:11,860 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:36:11,862 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:36:11,863 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:37:11,965 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:37:11,965 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:37:11,965 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:38:12,026 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:38:12,026 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:38:12,026 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:39:12,162 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:39:12,163 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:39:12,163 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:40:12,254 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:40:12,255 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:40:12,255 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:41:12,300 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:41:12,300 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:41:12,300 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:42:12,416 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:42:12,416 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:42:12,416 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:43:12,448 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:43:12,448 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:43:12,448 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:44:12,534 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:44:12,536 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 08:44:12,536 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:44:12,537 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:44:12,539 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.55936564759420648
      y: 0.16703819194001754
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:44:12,734 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.55936564759420648
      y: 0.16703819194001754
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:44:13,002 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 08:44:13,002 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:44:13,003 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:44:13,004 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:44:13,004 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:44:13,186 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:44:13,187 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:44:13,188 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:44:13,203 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:44:13,272 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:44:13,272 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:44:13,272 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 08:44:13,272 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:44:13,272 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 08:44:13,314 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 08:44:13,314 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 08:44:13,432 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 08:44:13,433 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 08:44:13,445 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 08:44:13,483 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 08:44:13,530 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 08:44:13,531 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 08:44:13,531 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:44:13,531 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:44:13,632 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:44:13,632 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 08:44:13,679 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 08:44:13,693 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 08:44:13,709 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 08:44:13,765 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 08:44:13,914 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:44:13,914 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:44:13,915 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:44:13,959 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:44:13,959 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:44:13,960 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 08:44:13,960 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 08:44:13,960 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 08:44:13,961 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 08:44:13,961 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 08:44:13,975 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:44:14,005 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:44:14,006 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:44:14,006 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 08:44:14,006 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:44:14,319 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 08:44:14,320 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:44:14,320 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 08:44:15,264 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:44:15,264 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:44:15,265 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:44:16,347 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 08:44:16,347 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:44:16,375 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:44:16,376 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:44:16,384 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:44:16,384 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:44:16,384 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 08:44:16,415 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:44:16,415 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 08:44:16,415 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:44:16,425 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:44:16,448 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:46:25,208 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0062.ibw (each dataset is a channel).
2025-07-25 08:46:25,228 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 08:46:25,228 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:46:25,229 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:46:25,229 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:46:25,229 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 08:46:25,334 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 124, R: 142
2025-07-25 08:46:25,334 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 124, R: 142
2025-07-25 08:46:25,336 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0037867956650360305
2025-07-25 08:46:25,364 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.43492149e-07 -1.67476305e-07] m.
2025-07-25 08:46:25,365 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 2.45792956e-12 -1.17252951e-11] m / s.
2025-07-25 08:46:25,366 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 08:46:25,367 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:46:25,410 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:46:25,431 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:46:25,624 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:46:25,635 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:46:25,691 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:46:25,697 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:46:25,707 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:46:25,708 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:46:25,808 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 08:46:25,808 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 08:46:25,898 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 08:46:25,902 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:46:25,965 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:46:25,975 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:46:26,140 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 08:46:26,141 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:46:26,169 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:46:26,234 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:46:26,398 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:46:26,399 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:46:26,399 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:46:26,399 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:46:26,400 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 08:46:26,400 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:46:26,416 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:46:26,423 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:46:26,423 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:46:26,423 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 08:46:26,423 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:46:26,424 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:46:26,424 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:46:26,485 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:46:26,487 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 08:46:26,487 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 08:46:26,487 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:47:26,485 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:47:26,485 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:47:26,486 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:48:26,587 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:48:26,587 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:48:26,589 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:49:26,703 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:49:26,703 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:49:26,703 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:50:26,774 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:50:26,774 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:50:26,776 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:51:26,816 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:51:26,816 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:51:26,817 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:52:26,900 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:52:26,900 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:52:26,900 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:53:26,962 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:53:26,962 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:53:26,963 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:54:27,095 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:54:27,095 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:54:27,095 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:55:27,150 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:55:27,150 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:55:27,151 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:56:27,197 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:56:27,198 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:56:27,198 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:57:27,246 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:57:27,246 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:57:27,247 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:58:27,329 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:58:27,329 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 08:58:27,329 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 08:59:27,493 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 08:59:27,493 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 08:59:27,493 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:59:27,711 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:59:27,712 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.54156737582358538
      y: 0.17665823501190428
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:59:28,347 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.54156737582358538
      y: 0.17665823501190428
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 08:59:28,613 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 08:59:28,613 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:59:28,615 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:59:28,615 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:59:28,615 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:59:28,796 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:59:28,796 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:59:28,796 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:59:28,796 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:59:28,796 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 08:59:28,797 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:59:28,809 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:59:28,887 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:59:28,887 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 08:59:28,928 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 08:59:28,928 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 08:59:29,044 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 08:59:29,045 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 08:59:29,076 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 08:59:29,084 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 08:59:29,148 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 08:59:29,148 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 08:59:29,149 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 08:59:29,149 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:59:29,250 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:59:29,250 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 08:59:29,295 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 08:59:29,310 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 08:59:29,340 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 08:59:29,365 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 08:59:29,543 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:59:29,544 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:59:29,575 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:59:29,575 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:59:29,575 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 08:59:29,575 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 08:59:29,575 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 08:59:29,575 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 08:59:29,575 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 08:59:29,575 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:59:29,575 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 08:59:29,576 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 08:59:29,576 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 08:59:29,605 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:59:29,646 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:59:29,936 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 08:59:29,936 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 08:59:29,936 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 08:59:30,879 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 08:59:30,880 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 08:59:30,880 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 08:59:31,647 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 08:59:31,647 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 08:59:31,683 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:59:31,684 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 08:59:31,684 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 08:59:31,684 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 08:59:31,684 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 08:59:31,684 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 08:59:31,684 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 08:59:31,684 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 08:59:31,685 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 08:59:31,748 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:01:40,588 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0063.ibw (each dataset is a channel).
2025-07-25 09:01:40,610 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 09:01:40,611 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:01:40,611 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:01:40,611 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:01:40,611 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:01:40,666 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 123, R: 145
2025-07-25 09:01:40,666 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 123, R: 145
2025-07-25 09:01:40,668 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003394003058779888
2025-07-25 09:01:40,697 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.48781010e-07 -1.84073756e-07] m.
2025-07-25 09:01:40,697 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-5.77738737e-12 -1.81305416e-11] m / s.
2025-07-25 09:01:40,698 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 09:01:40,699 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
race
2025-07-25 09:01:40,700 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:01:40,969 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:01:40,971 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:01:40,971 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:01:40,974 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:01:41,114 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:01:41,114 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:01:41,215 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 09:01:41,216 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:01:41,217 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:01:41,245 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:01:41,245 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:01:41,252 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:01:41,463 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 09:01:41,510 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace

2025-07-25 09:01:41,535 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:01:41,714 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:01:41,715 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:01:41,760 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:01:41,760 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:01:41,760 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 09:01:41,760 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:01:41,776 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:01:41,776 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:01:41,776 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:01:41,776 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 09:01:41,776 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:01:41,776 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:01:41,776 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:01:41,816 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:01:41,902 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:01:41,902 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:01:41,903 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:02:41,861 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:02:41,861 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:02:41,862 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:03:41,894 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:03:41,894 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:03:41,894 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:04:41,999 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:04:42,001 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:04:42,001 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:05:42,064 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:05:42,064 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:05:42,066 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:06:42,072 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:06:42,072 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:06:42,072 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:07:42,186 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:07:42,186 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:07:42,186 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:08:42,284 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:08:42,284 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:08:42,286 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:09:42,318 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:09:42,318 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:09:42,320 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:10:42,416 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:10:42,416 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:10:42,417 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:11:42,422 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:11:42,422 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:11:42,423 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:12:42,431 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:12:42,431 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:12:42,432 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:13:42,577 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:13:42,577 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:13:42,579 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:14:42,700 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:14:42,701 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 09:14:42,701 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:14:42,824 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:14:42,825 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.55330331128098675
      y: 0.19826559993563087
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:14:43,398 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.55330331128098675
      y: 0.19826559993563087
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:14:43,666 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 09:14:43,666 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:14:43,667 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 09:14:43,668 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 09:14:43,668 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 09:14:43,856 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:14:43,856 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:14:43,856 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:14:43,857 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 09:14:43,857 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:14:43,866 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:14:43,888 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:14:43,934 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:14:43,934 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 09:14:43,977 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 09:14:43,977 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 09:14:44,109 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 09:14:44,148 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 09:14:44,156 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 09:14:44,195 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 09:14:44,196 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 09:14:44,196 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:14:44,196 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:14:44,203 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 09:14:44,296 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:14:44,297 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 09:14:44,359 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 09:14:44,360 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 09:14:44,419 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 09:14:44,427 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 09:14:44,606 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:14:44,607 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:14:44,621 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:14:44,621 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:14:44,621 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 09:14:44,621 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 09:14:44,621 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 09:14:44,623 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 09:14:44,623 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 09:14:44,637 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:14:44,637 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:14:44,637 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 09:14:44,637 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:14:44,684 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:14:44,707 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:14:44,980 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 09:14:44,980 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:14:44,981 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 09:14:45,946 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 09:14:45,947 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 09:14:45,947 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 09:14:46,630 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 09:14:46,630 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:14:46,750 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:14:46,751 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:14:46,751 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:14:46,752 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:14:46,752 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:14:46,752 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 09:14:46,792 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:14:46,792 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 09:14:46,792 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:14:46,839 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:16:55,138 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0064.ibw (each dataset is a channel).
2025-07-25 09:16:55,211 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 09:16:55,211 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:16:55,211 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:16:55,211 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:16:55,211 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:16:55,373 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 127, R: 135
2025-07-25 09:16:55,374 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 127, R: 135
2025-07-25 09:16:55,375 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0030349283563008574
2025-07-25 09:16:55,404 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.46874847e-07 -1.98770845e-07] m.
2025-07-25 09:16:55,405 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 2.08318285e-12 -1.60619705e-11] m / s.
2025-07-25 09:16:55,406 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 09:16:55,463 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:16:55,471 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:16:55,477 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:16:55,667 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:16:55,708 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:16:55,708 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:16:55,729 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:16:55,745 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:16:55,753 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:16:55,809 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:16:55,809 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:16:55,919 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 09:16:55,920 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:16:55,993 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:16:56,009 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:16:56,230 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 09:16:56,231 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:16:56,258 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:16:56,273 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:16:56,473 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:16:56,474 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:16:56,474 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:16:56,475 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:16:56,475 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 09:16:56,475 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:16:56,491 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:16:56,491 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:16:56,491 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:16:56,514 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:16:56,522 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:16:56,522 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:16:56,522 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 09:16:56,522 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:16:56,522 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:16:56,522 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:16:56,537 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:17:56,527 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:17:56,527 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:17:56,527 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:18:56,635 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:18:56,636 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:18:56,636 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:19:56,776 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:19:56,777 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:19:56,778 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:20:56,824 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:20:56,825 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:20:56,826 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:21:56,896 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:21:56,896 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:21:56,897 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:22:57,041 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:22:57,041 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:22:57,041 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:23:57,181 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:23:57,181 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:23:57,181 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:24:57,255 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:24:57,255 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:24:57,257 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:25:57,372 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:25:57,372 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:25:57,372 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:26:57,464 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:26:57,464 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:26:57,465 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:27:57,513 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:27:57,514 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:27:57,514 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:28:57,637 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:28:57,637 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:28:57,637 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:29:57,766 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:29:57,766 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 09:29:57,767 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:29:57,768 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:29:57,770 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5452443818335786
      y: 0.21134222766060465
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:29:57,907 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5452443818335786
      y: 0.21134222766060465
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:29:58,190 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 09:29:58,190 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:29:58,191 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 09:29:58,191 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 09:29:58,192 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 09:29:58,373 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:29:58,373 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:29:58,374 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:29:58,374 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:29:58,374 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 09:29:58,374 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:29:58,392 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:29:58,460 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:29:58,460 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 09:29:58,502 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 09:29:58,502 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 09:29:58,620 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 09:29:58,621 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 09:29:58,634 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 09:29:58,673 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 09:29:58,721 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 09:29:58,721 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 09:29:58,721 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:29:58,721 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:29:58,823 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:29:58,823 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 09:29:58,869 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 09:29:58,883 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 09:29:58,898 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 09:29:58,954 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 09:29:59,121 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:29:59,122 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:29:59,122 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:29:59,123 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:29:59,123 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:29:59,123 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 09:29:59,124 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:29:59,148 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:29:59,148 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:29:59,148 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 09:29:59,148 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 09:29:59,148 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 09:29:59,149 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 09:29:59,149 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 09:29:59,163 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:29:59,508 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 09:29:59,509 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:29:59,509 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 09:30:00,459 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 09:30:00,459 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 09:30:00,461 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 09:30:01,162 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 09:30:01,163 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:30:01,266 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:30:01,267 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:30:01,267 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:30:01,267 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:30:01,268 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 09:30:01,268 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:30:01,302 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:30:01,340 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:30:01,340 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 09:30:01,340 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:32:09,671 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0065.ibw (each dataset is a channel).
2025-07-25 09:32:09,690 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 09:32:09,690 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:32:09,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:32:09,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:32:09,691 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:32:09,901 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 117, R: 144
2025-07-25 09:32:09,901 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 117, R: 144
2025-07-25 09:32:09,902 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0035279231991208397
2025-07-25 09:32:09,929 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.14446849e-07 -2.24076614e-07] m.
2025-07-25 09:32:09,930 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 3.54587357e-11 -2.76708584e-11] m / s.
2025-07-25 09:32:09,931 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 09:32:09,932 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:32:09,966 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:32:10,014 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:32:10,151 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:32:10,151 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:32:10,202 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:32:10,214 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:32:10,219 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:32:10,252 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:32:10,252 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:32:10,266 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:32:10,442 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 09:32:10,485 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:32:10,493 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:32:10,531 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:32:10,699 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 09:32:10,750 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:32:10,789 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:32:10,797 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:32:10,952 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:32:10,952 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:32:10,954 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:32:10,954 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:32:10,954 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:32:10,955 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:32:10,966 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:32:10,966 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:32:10,966 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 09:32:10,966 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:32:11,013 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:32:11,013 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:32:11,013 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 09:32:11,013 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:32:11,013 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:32:11,013 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:32:11,639 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:33:11,112 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:33:11,112 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:33:11,112 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:34:11,221 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:34:11,221 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:34:11,223 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:35:11,333 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:35:11,333 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:35:11,334 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:36:11,477 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:36:11,477 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:36:11,479 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:37:11,500 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:37:11,500 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:37:11,501 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:38:11,512 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:38:11,512 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:38:11,512 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:39:11,613 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:39:11,613 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:39:11,613 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:40:11,651 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:40:11,651 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:40:11,651 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:41:11,748 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:41:11,748 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:41:11,749 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:42:11,785 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:42:11,785 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:42:11,785 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:43:11,881 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:43:11,881 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:43:11,881 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:44:11,906 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:44:11,906 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:44:11,906 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:45:12,018 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:45:12,019 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 09:45:12,020 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:45:12,095 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:45:12,096 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48670113377068658
      y: 0.24572847849513185
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:45:12,188 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48670113377068658
      y: 0.24572847849513185
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 09:45:12,454 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 09:45:12,454 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:45:12,456 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 09:45:12,456 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 09:45:12,457 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 09:45:12,637 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:45:12,637 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:45:12,637 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:45:12,639 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 09:45:12,639 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:45:12,639 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:45:12,696 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:45:12,727 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:45:12,727 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 09:45:12,769 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 09:45:12,769 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 09:45:12,885 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 09:45:12,886 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 09:45:12,924 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 09:45:12,963 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 09:45:12,987 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 09:45:12,987 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 09:45:12,987 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:45:12,987 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:45:13,089 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:45:13,089 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 09:45:13,140 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 09:45:13,149 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 09:45:13,203 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 09:45:13,226 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 09:45:13,386 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:45:13,386 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:45:13,386 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:45:13,387 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:45:13,387 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:45:13,387 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 09:45:13,388 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:45:13,413 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:45:13,413 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:45:13,413 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 09:45:13,413 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 09:45:13,413 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 09:45:13,415 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 09:45:13,415 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 09:45:13,483 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:45:13,773 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 09:45:13,773 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:45:13,773 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 09:45:14,718 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 09:45:14,719 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 09:45:14,719 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 09:45:15,447 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 09:45:15,448 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:45:15,551 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:45:15,552 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:45:15,552 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:45:15,553 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:45:15,553 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:45:15,553 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 09:45:15,553 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:45:15,554 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:45:15,627 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:45:15,627 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 09:47:24,185 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0066.ibw (each dataset is a channel).
2025-07-25 09:47:24,204 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 09:47:24,204 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:47:24,204 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:47:24,204 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:47:24,204 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 09:47:24,361 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 144
2025-07-25 09:47:24,361 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 144
2025-07-25 09:47:24,363 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003547734727552279
2025-07-25 09:47:24,393 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.38014223e-07 -2.46123527e-07] m.
2025-07-25 09:47:24,393 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-2.57782594e-11 -2.41151620e-11] m / s.
2025-07-25 09:47:24,394 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 09:47:24,394 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:47:24,394 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:47:24,493 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:47:24,659 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:47:24,660 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:47:24,672 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace

2025-07-25 09:47:24,697 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 09:47:24,698 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 09:47:24,799 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 09:47:24,799 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 09:47:24,908 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 09:47:24,937 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:47:24,937 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:47:24,945 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:47:25,154 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 09:47:25,201 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:47:25,201 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:47:25,224 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:47:25,405 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:47:25,405 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 09:47:25,405 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 09:47:25,405 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 09:47:25,406 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 09:47:25,406 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 09:47:25,466 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 09:47:25,466 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 09:47:25,466 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 09:47:25,466 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 09:47:25,466 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:47:25,466 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:47:25,466 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:47:25,483 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 09:47:25,483 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 09:47:25,483 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 09:47:25,505 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 09:48:25,510 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:48:25,510 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:48:25,510 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:49:25,550 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:49:25,550 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:49:25,550 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:50:25,627 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:50:25,627 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:50:25,627 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:51:25,770 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:51:25,770 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:51:25,771 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:52:25,781 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:52:25,781 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:52:25,781 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:53:25,894 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:53:25,894 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:53:25,895 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:54:25,962 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:54:25,963 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:54:25,964 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:55:26,023 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:55:26,023 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:55:26,024 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:56:26,026 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:56:26,027 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:56:26,027 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:57:26,123 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:57:26,123 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:57:26,123 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:58:26,181 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:58:26,181 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:58:26,182 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 09:59:26,286 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 09:59:26,287 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 09:59:26,287 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:00:26,349 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:00:26,350 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 10:00:26,351 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:00:26,364 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:00:26,367 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5581860818354919
      y: 0.26499398800633855
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:00:26,550 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.5581860818354919
      y: 0.26499398800633855
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:00:26,818 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 10:00:26,819 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:00:26,819 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:00:26,819 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:00:26,821 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:00:27,050 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:00:27,052 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:00:27,052 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:00:27,053 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 10:00:27,053 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:00:27,053 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:00:27,090 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:00:27,091 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 10:00:27,130 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 10:00:27,130 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 10:00:27,136 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:00:27,334 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 10:00:27,335 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 10:00:27,348 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 10:00:27,349 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 10:00:27,349 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:00:27,349 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:00:27,355 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 10:00:27,400 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 10:00:27,451 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:00:27,451 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 10:00:27,612 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 10:00:27,612 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 10:00:27,618 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 10:00:27,665 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 10:00:27,889 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:00:27,889 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:00:27,890 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:00:27,891 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:00:27,891 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:00:27,891 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 10:00:27,892 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 10:00:27,892 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 10:00:27,892 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 10:00:27,892 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 10:00:27,928 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:00:27,960 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:00:27,961 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:00:27,961 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 10:00:27,962 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:00:28,132 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 10:00:28,133 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:00:28,133 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 10:00:29,084 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:00:29,086 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:00:29,087 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:00:29,807 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 10:00:29,808 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:00:30,013 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:00:30,013 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:00:30,014 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:00:30,014 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:00:30,015 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 10:00:30,015 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 10:00:30,015 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:00:30,059 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:00:30,113 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:00:30,637 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:02:38,962 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0067.ibw (each dataset is a channel).
2025-07-25 10:02:38,981 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 10:02:38,981 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:02:38,981 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:02:38,981 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:02:38,983 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:02:39,010 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 122, R: 145
2025-07-25 10:02:39,010 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 122, R: 145
2025-07-25 10:02:39,012 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.003943181324073002
2025-07-25 10:02:39,061 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.07198016e-07 -3.05108951e-07] m.
2025-07-25 10:02:39,061 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 3.37014664e-11 -6.45081101e-11] m / s.
2025-07-25 10:02:39,062 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 10:02:39,136 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:02:39,137 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:02:39,162 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:02:39,406 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:02:39,409 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:02:39,409 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:02:39,442 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:02:39,488 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:02:39,488 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:02:39,590 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:02:39,590 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:02:39,683 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 10:02:39,686 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:02:39,686 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:02:39,724 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:02:39,981 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 10:02:39,982 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:02:39,982 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:02:40,004 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:02:40,244 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:02:40,244 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:02:40,245 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:02:40,245 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:02:40,245 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:02:40,245 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 10:02:40,247 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:02:40,247 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:02:40,247 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:02:40,278 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:02:40,279 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:02:40,279 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:02:40,287 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:02:40,340 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:02:40,341 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:02:40,341 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 10:02:40,342 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:03:40,258 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:03:40,259 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:03:40,259 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:04:40,275 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:04:40,275 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:04:40,275 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:05:40,323 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:05:40,323 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:05:40,324 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:06:40,337 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:06:40,338 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:06:40,339 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:07:40,468 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:07:40,468 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:07:40,470 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:08:40,515 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:08:40,515 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:08:40,516 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:09:40,653 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:09:40,654 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:09:40,654 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:10:40,780 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:10:40,780 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:10:40,780 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:11:40,931 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:11:40,931 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:11:40,931 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:12:40,947 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:12:40,947 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:12:40,947 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:13:40,992 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:13:40,992 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:13:40,994 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:14:41,103 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:14:41,104 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:14:41,104 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:15:41,106 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:15:41,106 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 10:15:41,106 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:15:41,263 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:15:41,266 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48080892723464158
      y: 0.35562041024745955
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:15:41,465 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.48080892723464158
      y: 0.35562041024745955
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:15:41,748 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 10:15:41,748 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:15:41,748 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:15:41,749 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:15:41,750 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:15:41,932 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:15:41,933 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:15:41,955 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:15:41,987 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:15:41,987 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 10:15:41,987 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:15:42,017 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:15:42,017 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 10:15:42,041 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:15:42,057 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 10:15:42,058 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 10:15:42,177 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 10:15:42,178 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 10:15:42,178 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 10:15:42,235 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 10:15:42,293 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 10:15:42,293 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 10:15:42,293 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:15:42,293 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:15:42,395 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:15:42,395 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 10:15:42,411 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 10:15:42,440 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 10:15:42,462 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 10:15:42,486 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 10:15:42,645 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:15:42,645 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:15:42,646 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:15:42,702 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:15:42,702 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:15:42,702 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 10:15:42,703 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 10:15:42,703 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 10:15:42,703 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 10:15:42,703 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 10:15:42,733 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:15:42,733 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:15:42,733 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 10:15:42,733 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:15:42,742 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:15:43,094 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 10:15:43,095 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:15:43,095 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 10:15:44,050 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:15:44,050 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:15:44,050 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:15:44,860 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 10:15:44,861 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:15:44,861 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:15:44,863 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:15:44,864 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:15:44,864 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 10:15:44,864 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:15:44,906 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:15:44,927 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:15:44,958 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:15:44,959 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 10:15:44,962 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:17:54,036 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0068.ibw (each dataset is a channel).
2025-07-25 10:17:54,057 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 10:17:54,057 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:17:54,058 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:17:54,058 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:17:54,058 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:17:54,083 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 133, R: 138
2025-07-25 10:17:54,083 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 133, R: 138
2025-07-25 10:17:54,084 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004058386567372888
2025-07-25 10:17:54,115 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-4.98857211e-07 -4.25253435e-07] m.
2025-07-25 10:17:54,115 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [ 9.11529345e-12 -1.31300546e-10] m / s.
2025-07-25 10:17:54,117 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 10:17:54,117 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:17:54,179 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:17:54,179 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:17:54,369 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:17:54,389 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:17:54,443 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:17:54,443 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:17:54,562 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:17:54,562 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:17:54,620 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 10:17:54,663 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:17:54,663 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:17:54,663 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:17:54,670 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:17:54,708 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:17:54,708 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:17:54,867 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 10:17:54,870 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:17:54,870 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:17:54,952 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:17:55,116 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:17:55,116 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:17:55,116 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:17:55,117 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:17:55,117 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:17:55,117 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 10:17:55,117 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:17:55,131 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:17:55,131 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:17:55,131 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:17:55,131 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 10:17:55,131 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:17:55,131 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:17:55,131 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:17:55,348 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:17:55,349 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:18:55,196 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:18:55,197 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:18:55,197 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:19:55,337 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:19:55,338 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:19:55,339 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:20:55,341 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:20:55,342 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:20:55,342 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:21:55,475 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:21:55,475 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:21:55,476 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:22:55,594 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:22:55,594 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:22:55,595 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:23:55,708 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:23:55,708 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:23:55,710 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:24:55,762 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:24:55,762 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:24:55,762 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:25:55,897 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:25:55,897 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:25:55,898 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:26:56,030 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:26:56,030 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:26:56,030 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:27:56,065 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:27:56,065 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:27:56,065 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:28:56,158 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:28:56,158 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:28:56,160 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:29:56,301 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:29:56,301 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:29:56,301 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:30:56,400 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:30:56,400 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 10:30:56,401 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:30:56,446 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:30:56,446 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49171835538343917
      y: 0.52808453501725594
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:30:56,540 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.49171835538343917
      y: 0.52808453501725594
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:30:56,820 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 10:30:56,820 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:30:56,821 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:30:56,821 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:30:56,823 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:30:57,022 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:30:57,023 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:30:57,024 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:30:57,024 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:30:57,024 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 10:30:57,026 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:30:57,089 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-25 10:30:57,089 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 10:30:57,132 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 10:30:57,132 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 10:30:57,265 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 10:30:57,301 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 10:30:57,350 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 10:30:57,350 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 10:30:57,350 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:30:57,350 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:30:57,356 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d

2025-07-25 10:30:57,451 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:30:57,451 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 10:30:57,516 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 10:30:57,519 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 10:30:57,519 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 10:30:57,583 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 10:30:57,770 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:30:57,770 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:30:57,791 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:30:57,791 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:30:57,791 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:30:57,792 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 10:30:57,792 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 10:30:57,792 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 10:30:57,792 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 10:30:57,792 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 10:30:57,807 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:30:57,807 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:30:57,807 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 10:30:57,807 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:30:57,862 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:30:58,135 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 10:30:58,135 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:30:58,136 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 10:30:59,083 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:30:59,084 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:30:59,085 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:30:59,871 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 10:30:59,872 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:30:59,872 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:30:59,873 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:30:59,874 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:30:59,874 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 10:30:59,884 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:30:59,969 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:30:59,969 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:30:59,970 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 10:30:59,970 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:30:59,973 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:33:08,314 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0069.ibw (each dataset is a channel).
2025-07-25 10:33:08,393 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 10:33:08,393 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:33:08,395 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:33:08,395 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:33:08,395 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:33:08,634 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 130
2025-07-25 10:33:08,635 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 130
2025-07-25 10:33:08,636 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0032142528869507797
2025-07-25 10:33:08,730 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.35733913e-07 -5.33308459e-07] m.
2025-07-25 10:33:08,730 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-4.03027727e-11 -1.18093994e-10] m / s.
2025-07-25 10:33:08,731 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 10:33:08,731 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:33:08,733 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:33:08,789 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:33:08,900 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:33:08,900 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:33:09,002 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:33:09,004 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:33:09,005 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:33:09,005 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:33:09,069 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:33:09,249 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 10:33:09,278 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:33:09,279 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:33:09,351 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:33:09,502 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 10:33:09,503 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:33:09,546 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace

2025-07-25 10:33:09,717 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:33:09,717 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:33:09,717 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:33:09,747 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:33:09,747 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:33:09,764 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:33:09,764 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:33:09,764 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 10:33:09,764 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:33:09,788 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:33:09,810 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:33:09,810 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:33:09,810 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:33:09,810 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 10:33:09,810 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:33:09,810 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:33:09,810 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:33:10,405 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:34:09,823 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:34:09,823 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:34:09,823 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:35:09,864 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:35:09,864 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:35:09,864 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:36:09,952 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:36:09,952 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:36:09,953 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:37:10,065 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:37:10,065 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:37:10,066 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:38:10,174 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:38:10,175 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:38:10,175 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:39:10,193 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:39:10,193 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:39:10,193 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:40:10,270 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:40:10,270 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:40:10,271 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:41:10,363 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:41:10,363 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:41:10,364 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:42:10,485 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:42:10,485 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:42:10,485 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:43:10,505 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:43:10,505 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:43:10,506 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:44:10,629 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:44:10,629 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:44:10,629 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:45:10,766 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:45:10,766 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:45:10,767 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:46:10,907 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:46:10,907 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 10:46:10,907 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:46:11,141 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:46:11,143 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.56728605071713678
      y: 0.62576160036785666
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:46:11,655 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.56728605071713678
      y: 0.62576160036785666
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 10:46:11,933 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 10:46:11,933 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:46:11,933 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:46:11,935 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:46:11,935 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:46:12,116 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:46:12,117 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:46:12,118 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:46:12,118 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:46:12,118 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 10:46:12,118 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:46:12,120 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:46:12,190 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:46:12,190 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 10:46:12,245 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 10:46:12,247 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 10:46:12,360 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 10:46:12,376 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 10:46:12,401 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 10:46:12,455 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 10:46:12,464 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 10:46:12,464 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 10:46:12,464 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:46:12,464 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:46:12,565 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:46:12,565 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 10:46:12,604 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 10:46:12,604 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 10:46:12,640 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 10:46:12,681 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 10:46:12,861 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:46:12,861 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:46:12,875 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:46:12,875 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:46:12,875 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:46:12,875 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 10:46:12,875 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:46:12,875 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:46:12,875 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 10:46:12,876 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 10:46:12,876 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 10:46:12,876 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 10:46:12,877 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 10:46:12,906 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:46:12,961 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:46:13,263 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 10:46:13,263 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:46:13,265 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 10:46:14,259 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 10:46:14,260 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 10:46:14,260 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 10:46:15,003 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 10:46:15,004 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:46:15,057 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:46:15,057 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:46:15,057 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:46:15,058 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:46:15,058 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 10:46:15,058 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:46:15,058 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:46:15,058 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 10:46:15,105 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:46:15,125 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:48:24,155 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0070.ibw (each dataset is a channel).
2025-07-25 10:48:24,173 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 10:48:24,174 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:48:24,174 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:48:24,174 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:48:24,174 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 10:48:24,283 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 143, R: 133
2025-07-25 10:48:24,283 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 143, R: 133
2025-07-25 10:48:24,285 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004206062622152112
2025-07-25 10:48:24,314 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-5.82921948e-07 -6.23360221e-07] m.
2025-07-25 10:48:24,315 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-5.15596723e-11 -9.83944200e-11] m / s.
2025-07-25 10:48:24,316 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 10:48:24,317 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:48:24,330 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:48:24,403 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:48:24,573 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:48:24,581 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:48:24,596 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:48:24,652 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 10:48:24,652 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 10:48:24,683 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:48:24,753 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 10:48:24,753 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 10:48:24,818 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 10:48:24,819 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:48:24,845 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:48:24,860 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:48:25,049 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 10:48:25,102 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:48:25,111 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:48:25,125 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:48:25,298 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:48:25,298 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 10:48:25,300 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 10:48:25,300 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 10:48:25,301 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 10:48:25,301 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 10:48:25,373 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 10:48:25,383 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 10:48:25,389 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 10:48:25,389 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 10:48:25,389 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 10:48:25,389 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:48:25,389 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:48:25,389 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:48:25,468 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 10:48:25,469 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 10:48:25,469 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 10:49:25,414 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:49:25,415 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:49:25,415 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:50:25,517 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:50:25,518 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:50:25,518 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:51:25,529 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:51:25,529 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:51:25,529 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:52:25,565 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:52:25,565 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:52:25,565 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:53:25,638 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:53:25,638 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:53:25,639 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:54:25,806 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:54:25,806 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:54:25,806 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:55:25,903 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:55:25,903 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:55:25,903 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:56:26,011 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:56:26,012 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:56:26,012 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:57:26,029 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:57:26,030 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:57:26,030 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:58:26,058 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:58:26,058 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:58:26,058 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 10:59:26,178 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 10:59:26,178 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 10:59:26,178 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:00:26,240 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:00:26,240 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:00:26,240 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:01:26,370 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:01:26,370 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 11:01:26,372 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:01:26,402 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:01:26,405 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.62328933395967479
      y: 0.70039572820633589
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:01:26,775 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.62328933395967479
      y: 0.70039572820633589
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:01:27,105 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 11:01:27,105 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:01:27,105 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:01:27,106 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:01:27,106 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:01:27,289 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:01:27,290 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:01:27,290 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:01:27,291 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 11:01:27,291 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:01:27,291 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:01:27,366 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:01:27,374 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:01:27,374 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 11:01:27,413 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 11:01:27,414 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 11:01:27,553 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 11:01:27,561 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 11:01:27,632 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 11:01:27,632 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 11:01:27,632 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:01:27,632 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:01:27,639 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 11:01:27,646 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 11:01:27,733 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:01:27,733 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 11:01:27,800 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 11:01:27,801 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 11:01:27,801 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 11:01:27,826 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 11:01:28,047 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:01:28,047 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:01:28,073 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:01:28,073 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:01:28,073 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:01:28,073 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:01:28,073 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 11:01:28,075 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 11:01:28,075 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:01:28,075 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 11:01:28,075 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 11:01:28,076 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 11:01:28,076 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 11:01:28,082 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:01:28,088 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:01:28,412 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 11:01:28,412 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:01:28,412 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 11:01:29,395 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:01:29,396 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:01:29,396 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:01:30,154 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 11:01:30,154 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:01:30,194 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:01:30,195 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:01:30,247 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:01:30,255 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:01:30,269 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-25 11:01:30,269 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 11:01:30,269 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:01:30,283 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:01:30,283 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 11:03:39,304 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0071.ibw (each dataset is a channel).
2025-07-25 11:03:39,326 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 11:03:39,327 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:03:39,327 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:03:39,327 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:03:39,327 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:03:39,584 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 138
2025-07-25 11:03:39,585 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 138
2025-07-25 11:03:39,588 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004563917158268557
2025-07-25 11:03:39,619 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-6.51032387e-07 -6.90704419e-07] m.
2025-07-25 11:03:39,619 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-7.44267518e-11 -7.35894524e-11] m / s.
2025-07-25 11:03:39,620 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 11:03:39,621 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:03:39,621 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:03:39,661 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:03:39,835 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:03:39,835 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:03:39,892 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:03:39,892 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:03:39,894 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:03:39,937 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:03:39,937 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:03:39,941 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:03:40,143 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 11:03:40,166 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:03:40,166 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:03:40,221 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:03:40,385 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 11:03:40,387 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:03:40,431 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:03:40,431 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:03:40,620 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:03:40,620 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:03:40,638 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:03:40,638 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:03:40,675 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:03:40,698 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:03:40,698 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:03:40,698 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:03:40,698 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 11:03:40,698 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:03:40,698 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:03:40,698 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:03:40,714 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:03:40,714 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:03:40,714 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 11:03:40,714 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:03:41,310 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:04:40,763 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:04:40,764 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:04:40,765 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:05:40,904 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:05:40,904 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:05:40,905 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:06:40,997 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:06:40,997 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:06:40,999 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:07:41,004 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:07:41,004 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:07:41,005 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:08:41,100 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:08:41,100 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:08:41,100 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:09:41,104 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:09:41,104 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:09:41,104 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:10:41,201 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:10:41,201 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:10:41,201 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:11:41,344 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:11:41,344 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:11:41,344 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:12:41,389 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:12:41,389 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:12:41,389 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:13:41,526 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:13:41,526 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:13:41,526 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:14:41,594 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:14:41,594 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:14:41,594 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:15:41,737 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:15:41,737 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:15:41,737 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:16:41,818 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:16:41,818 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 11:16:41,819 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:16:41,819 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:16:41,822 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.70932414014213552
      y: 0.74834039103347361
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:16:41,880 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.70932414014213552
      y: 0.74834039103347361
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:16:42,147 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 11:16:42,147 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:16:42,147 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:16:42,148 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:16:42,148 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:16:42,331 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:16:42,332 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:16:42,333 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:16:42,347 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:16:42,386 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:16:42,386 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 11:16:42,386 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:16:42,417 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:16:42,417 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 11:16:42,457 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 11:16:42,457 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 11:16:42,575 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 11:16:42,577 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 11:16:42,604 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 11:16:42,628 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 11:16:42,677 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 11:16:42,677 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 11:16:42,677 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:16:42,677 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:16:42,778 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:16:42,778 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 11:16:42,826 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 11:16:42,839 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 11:16:42,870 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 11:16:42,912 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 11:16:43,075 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:16:43,077 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:16:43,078 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:16:43,106 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:16:43,106 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:16:43,106 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 11:16:43,107 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 11:16:43,108 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 11:16:43,108 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 11:16:43,108 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 11:16:43,137 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:16:43,168 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:16:43,168 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:16:43,168 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 11:16:43,168 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:16:43,465 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 11:16:43,466 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:16:43,466 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 11:16:44,446 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:16:44,446 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:16:44,447 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:16:45,234 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 11:16:45,234 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:16:45,254 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:16:45,255 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:16:45,256 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:16:45,301 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:16:45,332 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:16:45,332 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:16:45,332 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 11:16:45,333 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 11:16:45,333 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:16:45,336 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:18:54,364 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0072.ibw (each dataset is a channel).
2025-07-25 11:18:54,390 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 11:18:54,390 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:18:54,390 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:18:54,391 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:18:54,391 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:18:54,605 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 119, R: 132
2025-07-25 11:18:54,605 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 119, R: 132
2025-07-25 11:18:54,606 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.00453254855425219
2025-07-25 11:18:54,635 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-7.05136338e-07 -7.04234697e-07] m.
2025-07-25 11:18:54,636 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-5.91285046e-11 -1.47868147e-11] m / s.
2025-07-25 11:18:54,637 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 11:18:54,638 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:18:54,667 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:18:54,682 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:18:54,895 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:18:54,896 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:18:54,913 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:18:54,925 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:18:54,930 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:18:54,946 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:18:54,997 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:18:54,997 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:18:55,168 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 11:18:55,197 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:18:55,205 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:18:55,213 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:18:55,436 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 11:18:55,460 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:18:55,476 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:18:55,485 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:18:55,680 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:18:55,681 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:18:55,687 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:18:55,688 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:18:55,727 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:18:55,741 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:18:55,741 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:18:55,741 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 11:18:55,742 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:18:55,742 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:18:55,742 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:18:55,766 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:18:55,772 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:18:55,772 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:18:55,772 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 11:18:55,773 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:18:56,364 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:19:55,895 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:19:55,895 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:19:55,895 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:20:55,924 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:20:55,924 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:20:55,925 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:21:56,024 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:21:56,026 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:21:56,026 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:22:56,119 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:22:56,120 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:22:56,120 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:23:56,274 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:23:56,274 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:23:56,275 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:24:56,330 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:24:56,330 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:24:56,330 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:25:56,446 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:25:56,446 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:25:56,446 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:26:56,564 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:26:56,564 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:26:56,566 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:27:56,662 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:27:56,662 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:27:56,662 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:28:56,795 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:28:56,795 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:28:56,795 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:29:56,839 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:29:56,840 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:29:56,840 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:30:56,850 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:30:56,851 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:30:56,851 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:31:56,882 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:31:56,882 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 11:31:56,882 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:31:57,055 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:31:57,057 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.75145890888315625
      y: 0.71581901293334349
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:31:57,607 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.75145890888315625
      y: 0.71581901293334349
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:31:57,891 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 11:31:57,891 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:31:57,892 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:31:57,892 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:31:57,894 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:31:58,076 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:31:58,077 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:31:58,078 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:31:58,084 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:31:58,100 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:31:58,100 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 11:31:58,100 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:31:58,164 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:31:58,164 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 11:31:58,205 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 11:31:58,206 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 11:31:58,324 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 11:31:58,324 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 11:31:58,352 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 11:31:58,362 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 11:31:58,425 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 11:31:58,425 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 11:31:58,425 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:31:58,425 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:31:58,526 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:31:58,526 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 11:31:58,574 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 11:31:58,586 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 11:31:58,616 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 11:31:58,641 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 11:31:58,821 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:31:58,821 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:31:58,833 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:31:58,833 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:31:58,833 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 11:31:58,833 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:31:58,848 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:31:58,848 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:31:58,848 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 11:31:58,848 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 11:31:58,848 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 11:31:58,849 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 11:31:58,849 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 11:31:58,880 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:31:58,919 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:31:59,208 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 11:31:59,209 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:31:59,209 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 11:32:00,169 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:32:00,170 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:32:00,170 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:32:00,929 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 11:32:00,929 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:32:00,964 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:32:00,965 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:32:00,965 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:32:00,966 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 11:32:00,966 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:32:00,966 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:32:00,966 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:32:00,966 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:32:00,966 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 11:32:01,030 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:34:10,093 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0073.ibw (each dataset is a channel).
2025-07-25 11:34:10,199 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 11:34:10,199 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:34:10,200 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:34:10,200 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:34:10,200 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:34:10,437 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 124, R: 138
2025-07-25 11:34:10,438 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 124, R: 138
2025-07-25 11:34:10,439 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.004214695164727137
2025-07-25 11:34:10,470 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-7.11669322e-07 -7.00378737e-07] m.
2025-07-25 11:34:10,471 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-7.13450214e-12  4.21099395e-12] m / s.
2025-07-25 11:34:10,471 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 11:34:10,472 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:34:10,472 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:34:10,543 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:34:10,685 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:34:10,685 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:34:10,740 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:34:10,742 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:34:10,742 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:34:10,787 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:34:10,787 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:34:10,821 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:34:11,007 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 11:34:11,015 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:34:11,015 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:34:11,101 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:34:11,257 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 11:34:11,258 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:34:11,281 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:34:11,281 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:34:11,484 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:34:11,485 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:34:11,501 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:34:11,501 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:34:11,501 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:34:11,502 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:34:11,502 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 11:34:11,502 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:34:11,540 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:34:11,547 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg

2025-07-25 11:34:11,547 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:34:11,547 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 11:34:11,547 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:34:11,547 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:34:11,548 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:34:12,187 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:35:11,614 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:35:11,614 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:35:11,614 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:36:11,759 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:36:11,759 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:36:11,759 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:37:11,815 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:37:11,815 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:37:11,815 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:38:11,919 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:38:11,919 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:38:11,919 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:39:12,085 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:39:12,085 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:39:12,085 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:40:12,108 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:40:12,108 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:40:12,110 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:41:12,216 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:41:12,216 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:41:12,217 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:42:12,293 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:42:12,293 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:42:12,294 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:43:12,397 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:43:12,397 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:43:12,398 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:44:12,441 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:44:12,441 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:44:12,442 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:45:12,544 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:45:12,544 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:45:12,544 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:46:12,711 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:46:12,711 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:46:12,711 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:47:12,730 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:47:12,731 | afspm.samples.keep_scanning.experiment | DEBUG:49 | Sending out old scan params to keep scanning.
2025-07-25 11:47:12,731 | afspm.io.control.client | DEBUG:242 | Sending set_scan_params with: spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:47:12,967 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0
      y: 0
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:47:12,970 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.717260241653148
      y: 0.69707881061298738
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:47:13,356 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_SET_SCAN_PARAMS, spatial {
  roi {
    top_left {
      x: 0.717260241653148
      y: 0.69707881061298738
    }
    size {
      x: 5
      y: 5
    }
  }
  length_units: "um"
  angular_units: "degrees"
}
data {
  shape {
    x: 128
    y: 128
  }
}

2025-07-25 11:47:13,638 | afspm.components.microscope.translator | INFO:616 | New scope state SS_MOVING, sending out.
2025-07-25 11:47:13,639 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:47:13,640 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:47:13,640 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:47:13,642 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:47:13,824 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:47:13,825 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:47:13,826 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:47:13,862 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:47:13,909 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:47:13,909 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:47:13,909 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_MOVING
2025-07-25 11:47:13,909 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_MOVING
2025-07-25 11:47:13,909 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:47:13,950 | afspm.components.microscope.translator | INFO:485 | New scan_params, sending out.
2025-07-25 11:47:13,950 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScanParameters2d
2025-07-25 11:47:14,067 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScanParameters2d
2025-07-25 11:47:14,068 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScanParameters2d
2025-07-25 11:47:14,106 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScanParameters2d
2025-07-25 11:47:14,128 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScanParameters2d
2025-07-25 11:47:14,171 | afspm.components.microscope.translator | INFO:497 | New probe position, sending out.
2025-07-25 11:47:14,171 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ProbePosition
2025-07-25 11:47:14,171 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:47:14,171 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:47:14,272 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:47:14,273 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScanParameters2d
2025-07-25 11:47:14,303 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ProbePosition
2025-07-25 11:47:14,333 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ProbePosition
2025-07-25 11:47:14,390 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ProbePosition
2025-07-25 11:47:14,396 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ProbePosition
2025-07-25 11:47:14,538 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:47:14,539 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:47:14,539 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:47:14,539 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:47:14,539 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:47:14,540 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:47:14,540 | afspm.components.scan.handler | INFO:202 | rescanner: Finished moving, will request collection.
2025-07-25 11:47:14,540 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:47:14,600 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:47:14,600 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:47:14,600 | afspm.components.scan.handler | INFO:202 | experiment: Finished moving, will request collection.
2025-07-25 11:47:14,600 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_SCANNING.
2025-07-25 11:47:14,600 | afspm.io.control.client | DEBUG:194 | Sending start-scan request.
2025-07-25 11:47:14,827 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client experiment: REQ_ACTION, action: "start-scan"

2025-07-25 11:47:14,828 | afspm.io.control.router | DEBUG:250 | scheduler: Handling send request: REQ_ACTION, action: "start-scan"

2025-07-25 11:47:14,960 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ProbePosition
2025-07-25 11:47:14,960 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:47:14,961 | afspm.io.control.server | DEBUG:69 | translator: Message received: REQ_ACTION, action: "start-scan"

2025-07-25 11:47:15,923 | afspm.io.control.server | DEBUG:88 | translator: Sending reply: REP_SUCCESS, None
2025-07-25 11:47:15,924 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to experiment: REP_SUCCESS, None
2025-07-25 11:47:15,924 | afspm.io.control.client | DEBUG:130 | experiment: Received reply: REP_SUCCESS, None
2025-07-25 11:47:16,644 | afspm.components.microscope.translator | INFO:502 | New scope state SS_SCANNING, sending out.
2025-07-25 11:47:16,644 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:47:16,722 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:47:16,723 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:47:16,723 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:47:16,723 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:47:16,724 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_SCANNING
2025-07-25 11:47:16,728 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:47:16,728 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:47:16,729 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_SCANNING
2025-07-25 11:47:16,729 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:47:16,745 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:49:25,115 | afspm.components.microscope.translators.asylum.translator | DEBUG:350 | Getting datasets from C:/Users/Asylum User/Documents/Asylum Research Data/250724\Image0074.ibw (each dataset is a channel).
2025-07-25 11:49:25,137 | afspm.components.microscope.translator | INFO:536 | New scans, sending out.
2025-07-25 11:49:25,137 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:49:25,137 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:49:25,138 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:49:25,138 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message Scan2d
2025-07-25 11:49:25,365 | afspm.components.drift.drift | DEBUG:331 | # keypoints L: 131, R: 142
2025-07-25 11:49:25,365 | afspm.components.drift.drift | DEBUG:333 | # descriptors L: 131, R: 142
2025-07-25 11:49:25,367 | afspm.components.drift.drift | DEBUG:459 | Drift estimate fitting score (normalized): 0.0028385029301791673
2025-07-25 11:49:25,397 | afspm.components.drift.scheduler | DEBUG:673 | The PCS-to-SCS correction vector has changed: [-7.25857998e-07 -7.00167919e-07] m.
2025-07-25 11:49:25,397 | afspm.components.drift.scheduler | DEBUG:676 | With corr rate: [-1.54941383e-11  2.30214833e-13] m / s.
2025-07-25 11:49:25,400 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_HeightRetrace
2025-07-25 11:49:25,400 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:49:25,412 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:49:25,497 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:49:25,635 | afspm.components.microscope.translator | INFO:502 | New scope state SS_FREE, sending out.
2025-07-25 11:49:25,636 | afspm.io.pubsub.publisher | DEBUG:76 | translator: Sending message ScopeStateMsg
2025-07-25 11:49:25,656 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:49:25,656 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:49:25,670 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:49:25,695 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:49:25,736 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_HeightRetrace
2025-07-25 11:49:25,737 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_AmplitudeRetrace
2025-07-25 11:49:25,910 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_PhaseRetrace
2025-07-25 11:49:25,918 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:49:25,934 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:49:25,974 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:49:26,155 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message Scan2d_0.0_ZSensorRetrace
2025-07-25 11:49:26,185 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:49:26,201 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:49:26,255 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:49:26,405 | afspm.io.pubsub.publisher | DEBUG:76 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:49:26,406 | afspm.io.pubsub.cache | DEBUG:242 | scheduler: Sending message ScopeStateMsg
2025-07-25 11:49:26,406 | afspm.io.pubsub.subscriber | DEBUG:212 | rescanner: Message received ScopeStateMsg
2025-07-25 11:49:26,407 | afspm.components.scan.handler | DEBUG:170 | rescanner: Received new scope state: SS_FREE
2025-07-25 11:49:26,407 | afspm.io.pubsub.subscriber | DEBUG:212 | ui: Message received ScopeStateMsg
2025-07-25 11:49:26,408 | afspm.components.scan.handler | INFO:198 | rescanner: Finished scan, preparing next scan params.
2025-07-25 11:49:26,408 | afspm.components.scan.handler | DEBUG:224 | rescanner: Not performing scanning logic because ScopeState undefined or problem not in problems set.
2025-07-25 11:49:26,419 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_PhaseRetrace
2025-07-25 11:49:26,419 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received Scan2d_0.0_ZSensorRetrace
2025-07-25 11:49:26,419 | afspm.io.pubsub.subscriber | DEBUG:212 | translator: Message received ScopeStateMsg
2025-07-25 11:49:26,448 | afspm.io.pubsub.subscriber | DEBUG:212 | metadata: Message received ScopeStateMsg
2025-07-25 11:49:26,464 | afspm.io.pubsub.subscriber | DEBUG:212 | experiment: Message received ScopeStateMsg
2025-07-25 11:49:26,464 | afspm.components.scan.handler | DEBUG:170 | experiment: Received new scope state: SS_FREE
2025-07-25 11:49:26,464 | afspm.components.scan.handler | INFO:198 | experiment: Finished scan, preparing next scan params.
2025-07-25 11:49:26,465 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:49:26,465 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:49:26,465 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:50:26,495 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:50:26,495 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:50:26,495 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:51:26,583 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:51:26,583 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:51:26,584 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:52:26,605 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:52:26,605 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:52:26,606 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:53:26,679 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:53:26,679 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:53:26,679 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:54:26,791 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:54:26,792 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:54:26,793 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:55:26,852 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:55:26,852 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:55:26,852 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:56:26,896 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:56:26,896 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:56:26,896 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:57:26,905 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:57:26,905 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:57:26,907 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:58:27,003 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:58:27,003 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:58:27,004 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 11:59:27,062 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 11:59:27,062 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 11:59:27,062 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 12:00:27,115 | afspm.components.scan.handler | INFO:234 | experiment: In state SS_FREE, wanting state SS_MOVING.
2025-07-25 12:00:27,115 | afspm.samples.keep_scanning.experiment | DEBUG:45 | Insufficient time has passed between scans. Returning None.
2025-07-25 12:00:27,115 | afspm.components.scan.handler | DEBUG:246 | experiment: Cannot send params, because get_next_params returned None.Sleeping and retrying.
2025-07-25 12:00:53,412 | afspm.components.control_ui | INFO:176 | End experiment selected.
2025-07-25 12:00:53,413 | afspm.io.control.client | DEBUG:396 | Sending end_experiment.
2025-07-25 12:00:53,425 | afspm.io.control.router | DEBUG:343 | scheduler: Message received from client ui: REQ_END_EXPERIMENT, None
2025-07-25 12:00:53,425 | afspm.io.control.router | INFO:293 | scheduler: End of experiment requested.
2025-07-25 12:00:53,426 | afspm.io.control.router | DEBUG:350 | scheduler: Sending reply to ui: REP_SUCCESS, None
2025-07-25 12:00:53,426 | afspm.io.pubsub.publisher | DEBUG:82 | scheduler: Sending kill signal.
2025-07-25 12:00:53,426 | afspm.components.microscope.scheduler | INFO:108 | Shutdown requested, sending kill signal out.
2025-07-25 12:00:53,426 | afspm.io.pubsub.cache | DEBUG:248 | scheduler: Sending kill signal.
2025-07-25 12:00:53,426 | afspm.io.control.client | DEBUG:130 | ui: Received reply: REP_SUCCESS, None
2025-07-25 12:00:53,431 | afspm.io.pubsub.subscriber | INFO:207 | metadata: Shutdown was requested!
2025-07-25 12:00:53,431 | afspm.components.component | INFO:160 | metadata: Shutdown received. Stopping.
2025-07-25 12:00:53,456 | afspm.io.pubsub.subscriber | INFO:207 | ui: Shutdown was requested!
2025-07-25 12:00:53,456 | afspm.components.component | INFO:160 | ui: Shutdown received. Stopping.
2025-07-25 12:00:53,463 | afspm.io.pubsub.subscriber | INFO:207 | rescanner: Shutdown was requested!
2025-07-25 12:00:53,464 | afspm.components.component | INFO:160 | rescanner: Shutdown received. Stopping.
2025-07-25 12:00:53,464 | afspm.io.heartbeat.heartbeat | DEBUG:171 | scheduler: Listener received kill signal!
2025-07-25 12:00:53,464 | afspm.components.monitor | INFO:265 | Component scheduler has finished. Closing.
2025-07-25 12:00:53,478 | afspm.io.pubsub.subscriber | INFO:207 | experiment: Shutdown was requested!
2025-07-25 12:00:53,478 | afspm.components.component | INFO:160 | experiment: Shutdown received. Stopping.
2025-07-25 12:00:53,484 | afspm.io.heartbeat.heartbeat | DEBUG:171 | ui: Listener received kill signal!
2025-07-25 12:00:53,484 | afspm.components.monitor | INFO:265 | Component ui has finished. Closing.
2025-07-25 12:00:53,532 | afspm.io.heartbeat.heartbeat | DEBUG:171 | metadata: Listener received kill signal!
2025-07-25 12:00:53,532 | afspm.components.monitor | INFO:265 | Component metadata has finished. Closing.
2025-07-25 12:00:53,564 | afspm.io.heartbeat.heartbeat | DEBUG:171 | rescanner: Listener received kill signal!
2025-07-25 12:00:53,564 | afspm.components.monitor | INFO:265 | Component rescanner has finished. Closing.
2025-07-25 12:00:53,565 | afspm.components.monitor | INFO:248 | All components closed, exiting.
2025-07-25 12:00:53,579 | afspm.io.heartbeat.heartbeat | DEBUG:171 | experiment: Listener received kill signal!
2025-07-25 12:00:53,579 | afspm.components.monitor | INFO:265 | Component experiment has finished. Closing.
2025-07-25 12:00:53,586 | afspm.components.monitor | INFO:248 | All components closed, exiting.
2025-07-25 12:00:53,633 | afspm.components.monitor | INFO:248 | All components closed, exiting.
2025-07-25 12:00:53,665 | afspm.components.monitor | INFO:248 | All components closed, exiting.
2025-07-25 12:00:53,680 | afspm.components.monitor | INFO:248 | All components closed, exiting.
2025-07-25 12:00:53,865 | afspm.io.pubsub.subscriber | INFO:207 | translator: Shutdown was requested!
2025-07-25 12:00:53,865 | afspm.components.component | INFO:160 | translator: Shutdown received. Stopping.
2025-07-25 12:00:53,901 | afspm.io.heartbeat.heartbeat | DEBUG:171 | translator: Listener received kill signal!
2025-07-25 12:00:53,901 | afspm.components.monitor | INFO:265 | Component translator has finished. Closing.
2025-07-25 12:00:54,002 | afspm.components.monitor | INFO:248 | All components closed, exiting.
