A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• /bleomycin resistance protein/dioxygenase superfamily (PF00903) sequences, 81 associated with CrcB-like protein, camphor resistance (PF02537) sequences, 22 associated with aminoglycoside antibiotic resistance kinase (PF04655) sequences, and 2 associated with putative multidrug resistance efflux protein

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes

• Shun Saito,
• Kanji Indo,
• Naoya Oku,
• Hisayuki Komaki,
• Masashi Kawasaki and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2939–2949, doi:10.3762/bjoc.17.203

• Streptomyces, are especially noted, accounting for more than 800 metabolites of actinomycetes origin [11], which include the antiinfective aminoglycoside gentamicin [13], antidiabetic glycoside acarbose [14], glycopeptide antibiotic teicoplanin [15], enediyne antitumor component of drug-antibody conjugate

Stereoselective syntheses of 3-aminocyclooctanetriols and halocyclooctanetriols

• Emine Salamci and
• Yunus Zozik

Beilstein J. Org. Chem. 2021, 17, 705–710, doi:10.3762/bjoc.17.59

• of the most important conduramines 4 is valienamine (3) [17], which is found as a building block in several aminoglycoside antibiotics [2]. Furthermore, conduramines 4 and their derivatives are used as both inhibitors of glycosidases and useful intermediates in organic synthesis [18]. Halocyclitols

Targeting the Pseudomonas quinolone signal quorum sensing system for the discovery of novel anti-infective pathoblockers

• Christian Schütz and
• Martin Empting

Beilstein J. Org. Chem. 2018, 14, 2627–2645, doi:10.3762/bjoc.14.241

• machineries consisting of several protein components, which in total span from the inner to the outer side of the cell membrane. Their function is to expel a wide range of xenobiotics, among them antibiotics from the cephalosporin, carbapenem, fluroquinolone and aminoglycoside classes [13]. Through this

An overview of recent advances in duplex DNA recognition by small molecules

• Sayantan Bhaduri,
• Nihar Ranjan and
• Dev P. Arya

Beilstein J. Org. Chem. 2018, 14, 1051–1086, doi:10.3762/bjoc.14.93

An eco-compatible strategy for the diversity-oriented synthesis of macrocycles exploiting carbohydrate-derived building blocks

• Sushil K. Maurya and
• Rohit Rana

Beilstein J. Org. Chem. 2017, 13, 1106–1118, doi:10.3762/bjoc.13.110

• rings and have shown important biological properties [5][6][7][8][9][10][11][12]. For example, macrocyclic aminoglycoside analogues have shown binding with the trans-activating region (TAR) RNA of the human immunodeficiency virus (HIV); an attractive target for RNA-based drug discovery [13]. Further

Cyclisation mechanisms in the biosynthesis of ribosomally synthesised and post-translationally modified peptides

• Andrew W. Truman

Beilstein J. Org. Chem. 2016, 12, 1250–1268, doi:10.3762/bjoc.12.120

• cells [147]. Surprisingly, the human genome contains six θ-defensin pseudogenes that are actually expressed [148]. However, these contain premature stop codons that prevent the proper expression of these precursor peptides. Remarkably, aminoglycoside-induced stop codon readthrough of these genes in

Muraymycin nucleoside-peptide antibiotics: uridine-derived natural products as lead structures for the development of novel antibacterial agents

• Daniel Wiegmann,
• Stefan Koppermann,
• Marius Wirth,
• Giuliana Niro,
• Kristin Leyerer and
• Christian Ducho

Beilstein J. Org. Chem. 2016, 12, 769–795, doi:10.3762/bjoc.12.77

• reported for aminoglycoside-modifying proteins [13], and alteration of the drug target, as can be found in macrolide-resistant bacteria that contain mutations in the bacterial ribosome [14]. Further mechanisms are an increased efflux [15] and a change in permeability of the cell wall [16][17]. Due to the

Mycothiol synthesis by an anomerization reaction through endocyclic cleavage

• Shino Manabe and
• Yukishige Ito

Beilstein J. Org. Chem. 2016, 12, 328–333, doi:10.3762/bjoc.12.35

• cell from toxic chemicals. The inhibition of the mycothiol biosynthesis is considered as a treatment for tuberculosis. Mycothiol contains an α-aminoglycoside, which is difficult to prepare stereoselectively by a conventional glycosylation reaction. In this study, mycothiol was synthesized by an

• anomerization reaction from an easily prepared β-aminoglycoside through endocyclic cleavage. Keywords: anomerization; aminoglycoside; endocyclic cleavage reaction; inositol; mycothiol; Introduction Tuberculosis is an infectious disease and has had a high death rate over the past few decades [1][2][3][4]. The

• ]. The Ni(4-F-PhCN)4(OTf)2-catalyzed synthesis of N-substituted benzylideneaminoglycosides has also been achieved to fabricate MSH [25]. The α-stereoselective formation of aminoglycoside is the crucial step in MSH synthesis. However, except for the intramolecular aglycone delivery method developed by

Come-back of phenanthridine and phenanthridinium derivatives in the 21st century

• Lidija-Marija Tumir,
• Marijana Radić Stojković and
• Ivo Piantanida

Beilstein J. Org. Chem. 2014, 10, 2930–2954, doi:10.3762/bjoc.10.312

• neomycin–methidium conjugate 16 (Figure 7) [80], which selectively recognized the DNA:RNA hybrid duplex (poly(dA):poly(rU)) with sub-nanomolar affinity, much higher than the affinities shown for traditional aminoglycoside–nucleic acid targets. This joins the mentioned EB analogue to a small number of

Regio- and stereoselective synthesis of new diaminocyclopentanols

• Evgeni A. Larin,
• Valeri S. Kochubei and
• Yuri M. Atroshchenko

Beilstein J. Org. Chem. 2014, 10, 2513–2520, doi:10.3762/bjoc.10.262

• those mimics may subtly influence their biological activity [11][12][13][14]. The functionalization of synthetic, unnatural aminocyclitols represents an attractive strategy towards the preparation of aminoglycoside and nucleoside mimics, and the development of common synthesis routes to various regio

Autonomous assembly of synthetic oligonucleotides built from an expanded DNA alphabet. Total synthesis of a gene encoding kanamycin resistance

• Kristen K. Merritt,
• Kevin M. Bradley,
• Daniel Hutter,
• Mariko F. Matsuura,
• Diane J. Rowold and
• Steven A. Benner

Beilstein J. Org. Chem. 2014, 10, 2348–2360, doi:10.3762/bjoc.10.245

• conversion can be performed in vitro, but also in E. coli in a strain (SEGUE) being developed to replicate plasmids containing expanded genetic systems. Here, we illustrate this strategy by performing a total synthesis of a gene encoding an aminoglycoside 3’-phosphotransferase that confers kanamycin

• altogether (Figure 6a). These results demonstrated successful autonomous assembly of a gene encoding an active aminoglycoside 3’-phosphotransferase. They allowed us to estimate the success of the overall “start-to-finish” process, including insertion into the plasmid and other steps unrelated to the OligArch

• ) ultralong DNA (UL-DNA) constructs, including whole chromosomes. Experimental Materials and methods Design The sequence for an aminoglycoside 3’-phosphotransferase that encodes resistance to kanamycin is commonly used in cloning vectors and was obtained from the National Center for Biotechnology Information

Indium-mediated allylation in carbohydrate synthesis: A short and efficient approach towards higher 2-acetamido-2-deoxy sugars

• Christopher Albler,
• Ralph Hollaus,
• Hanspeter Kählig and
• Walther Schmid

Beilstein J. Org. Chem. 2014, 10, 2230–2234, doi:10.3762/bjoc.10.231

• -Cope rearrangement of N-galactosyl-N-homoallylamines [18]. Aminooctoses, on the other hand, are present in the aminoglycoside antibiotic apramycin [19], in the form of an aminooctodiose derivative. However, only few syntheses of this dipyranoid aminosugar [20][21] were reported so far. Thus, we were

• interested in developing a general route towards the synthesis of these higher aminosugars. Since the preparation of new potent aminoglycoside antibiotics remains an important topic in medicinal chemistry [22], our precursors used should be flexible in terms of stereochemical variety, thus potentially

Design and synthesis of multivalent neoglycoconjugates by click conjugations

• Feiqing Ding,
• Li Ji,
• Ronny William,
• Hua Chai and
• Xue-Wei Liu

Beilstein J. Org. Chem. 2014, 10, 1325–1332, doi:10.3762/bjoc.10.134

• ∙OEt2 in DCE at room temperature for 20 min, the desired aminoglycoside 2a was obtained in good yield with exclusive α-stereoselectivity [50]. Later, a systematic screening was executed using 3-tosylamino-2,3-dideoxysugar 2a and benzyl azide (3a) as our model system under varied conditions of catalysts

Novel fatty acid methyl esters from the actinomycete Micromonospora aurantiaca

• Jeroen S. Dickschat,
• Hilke Bruns and
• Ramona Riclea

Beilstein J. Org. Chem. 2011, 7, 1697–1712, doi:10.3762/bjoc.7.200

• genus includes producers of important antibiotics such as the aminoglycoside gentamycin [15] and the antitumor antibiotics lomaiviticins A and B (Micromonospora lomaivitiensis) [16]. Here the results of the headspace analyses of M. aurantiaca are described. Besides compounds from other classes, several

(Pseudo)amide-linked oligosaccharide mimetics: molecular recognition and supramolecular properties

• José L. Jiménez Blanco,
• Fernando Ortega-Caballero,
• Carmen Ortiz Mellet and
• José M. García Fernández

Beilstein J. Org. Chem. 2010, 6, No. 20, doi:10.3762/bjoc.6.20

• other, a high degree of diversity can be achieved by employing only a small set of different SDAs. Moreover, oligomeric SDAs with unprotected groups represent a novel type of aminoglycoside mimetics with potential recognition properties towards new RNA targets emerging in the post-genome era. Cyclic SAA

Synthesis of a new class of aminocyclitol analogues with the conduramine D-2 configuration

• Latif Kelebekli,
• Yunus Kara and
• Murat Celik

Beilstein J. Org. Chem. 2010, 6, No. 15, doi:10.3762/bjoc.6.15

• ; oxidation; X-ray analysis; Introduction Among the myriad of naturally occurring compounds are the aminocyclitol-containing natural products, which represent a large family of sugar derived microbial secondary metabolites and include the clinically active aminoglycoside inhibitors [1][2][3][4][5][6][7][8][9