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1 article(s) from Bermeo, Rafael

Computational tools for drawing, building and displaying carbohydrates: a visual guide

Kanhaya Lal,
Rafael Bermeo and
Serge Perez

Beilstein J. Org. Chem. 2020, 16, 2448–2468, doi:10.3762/bjoc.16.199

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Graphical Abstract

Figure 1: Levels of representation of glycans: from sketching to virtual reality.

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Figure 2: Depiction of lactose by various glycan sketching tools.

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Figure 3: Examples of different glycan structure text formats for the same glycan. Data in these formats are ...

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Figure 4: From top to bottom: SugarSketcher [36] interface with a glycan structure drawn using the “Quick Mode”. ...

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Figure 5: GlyTouCan [38] interface allows to search for glycans structures in the database. Data contained in Gly...

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Figure 6: From top to bottom: GlycanBuilder2 [46] interface with a glycan image in SNFG notation. Original Glycan...

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Figure 7: From top to bottom: DrawGlycan-SNFG [51] web interface with a glycan text input and the resulting image...

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Figure 8: From top to bottom: Glyco.me SugarBuilder [56] interface with a glycan structure showing options to def...

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Figure 9: From top to bottom: Sweet II [62] web-interface with a text input to generate a 3D model. GLYCAM Carboh...

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Figure 10: PolysGlycanBuilder [77] interface illustrating glycan drawing using SNFG symbols. The glycan can be fur...

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Figure 11: From top to bottom: 3D-SNFG representation of glycan using 3D-SNFG script integrated VMD [79]. LiteMol [80]...

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Published 02 Oct 2020

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