Chemical glycobiology

• Elisa Fadda,
• Rachel Hevey,
• Benjamin Schumann and
• Ulrika Westerlind

Beilstein J. Org. Chem. 2025, 21, 8–9, doi:10.3762/bjoc.21.2

• glycan assembly [9]. Target-directed synthetic strategies are being developed by Reihill et al. [10] and Karak et al. [11], exploring the syntheses of the linker-displaying, sulfated TF disaccharide and lipid II analogues, respectively. The direct application of synthetic glycans is shown by Fan et al

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• protocol (Figure 9). CDH 10b emerged as a potent EeAChEI (IC50 = 0.30 μM) and CDH 10c as a strong eqBuChEI (IC50 = 0.03 μM), both showing promising activity compared to tacrine and donepezil. A SAR analysis indicated the linker length's crucial role in CDH inhibition activity, as all the compounds with n

Extension of the π-system of monoaryl-substituted norbornadienes with acetylene bridges: influence on the photochemical conversion and storage of light energy

• Robin Schulte,
• Dustin Schade,
• Thomas Paululat,
• Till J. B. Zähringer,
• Christoph Kerzig and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 3061–3068, doi:10.3762/bjoc.20.254

• and the analogues 1c and 1e without an alkyne linker [29][30][34]. As the only exception, the m-substituted derivative 1k has a higher quantum yield than its analog 1b, which is, however, still lower than the one of the cyano-substituted norbornadiene 1c [30][34]. In addition, substitution at the 2

• , showed longer half-lives. Therefore, compounds 1h–l,n have significanty lower half-lives than the corresponding analogues without an alkyne linker [29][30]. Conclusion In summary, a small series of mono-, bis-, and tris-norbornadiene derivatives with alkynylbenzene and alkynylnaphthalene core units was

• properties. However, although the integration of alkyne-linker units into otherwise unsubstituted arene-linked mono-, bis-, and tris-norbornadienes resulted in the anticipated red shift of the absorption, this slight advantage was established to the disadvantage of other relevant MOST properties, especially

Cyclodextrin-based rotaxanes for polymer materials: challenge on simultaneous realization of inexpensive production and defined structures

• Yosuke Akae

Beilstein J. Org. Chem. 2024, 20, 3026–3049, doi:10.3762/bjoc.20.252

• named the vinylic supramolecular crosslinker (VSC), which was made of an axle component having a polymerizable vinylic group and a bulky end-capping group on the other side, and α-CD oligomer having around 3–5 α-CDs linked by a PPG linker with urethane bonds as the wheel component. This VSC was easily

5th International Symposium on Synthesis and Catalysis (ISySyCat2023)

• Anthony J. Burke and
• Elisabete P. Carreiro

Beilstein J. Org. Chem. 2024, 20, 2704–2707, doi:10.3762/bjoc.20.227

• organocatalyst for the gram-scale enantioselective synthesis of (S)-baclofen”, an interesting approach to recycling the very useful cinchona squaramide organocatalysts was described. This approach involved functionalization of the organocatalyst with a lipophilic linker (octadecyl side chains), resulting in a

Hypervalent iodine-mediated cyclization of bishomoallylamides to prolinols

• Smaher E. Butt,
• Konrad Kepski,
• Jean-Marc Sotiropoulos and
• Wesley J. Moran

Beilstein J. Org. Chem. 2024, 20, 2455–2460, doi:10.3762/bjoc.20.209

• . Installing a geminal dimethyl group on the alkyl linker was anticipated to lead to an improvement in cyclization, however, very low conversion was observed and the product 7p was isolated in 10% yield. We then investigated the cyclization of cis-disubstituted alkene 3q and were delighted to observe that only

Synthesis, electrochemical properties, and antioxidant activity of sterically hindered catechols with 1,3,4-oxadiazole, 1,2,4-triazole, thiazole or pyridine fragments

• Daria A. Burmistrova,
• Andrey Galustyan,
• Nadezhda P. Pomortseva,
• Kristina D. Pashaeva,
• Maxim V. Arsenyev,
• Oleg P. Demidov,
• Mikhail A. Kiskin,
• Andrey I. Poddel’sky,
• Nadezhda T. Berberova and
• Ivan V. Smolyaninov

Beilstein J. Org. Chem. 2024, 20, 2378–2391, doi:10.3762/bjoc.20.202

• -derivatives of thiazole or pyridine, this process leads to the formation of the corresponding thioethers with a methylene linker. At the same time, thiolated 1,3,4-oxadiazole or 1,2,4-triazole undergo alkylation at the nitrogen atom in the reaction with 3,5-di-tert-butyl-6-methoxymethylcatechol to form the

• previously found that the reaction between 3,5-di-tert-butyl-6-methoxymethylcatechol and different functionalized thiols occurs via an acid-catalyzed mechanism and leads to corresponding thioethers with methylene linker [53][54]. Hybrid structures of this type are of particular interest from the point of

• –80%) (Scheme 1a). The reaction between 3,5-di-tert-butyl-6-methoxymethylcatechol and 2-mercapto-4-phenylthiazole or 3-nitropyridine-2-thiol occurs via an acid-catalyzed mechanism and leads to corresponding thioethers 4, 5 with methylene linker in a good yield (80% and 63%, correspondingly) (Scheme 1b

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• provide unprecedented depth of proteome coverage and the possibility to detect desired modified peptides with high sensitivity. The chemical ‘linker’ connecting an active compound–protein conjugate with a detection tag is the critical component of all chemical proteomic workflows. In this review, we

• comprehensively in several reviews [45][46][47][48]. Applications of cleavable linkers, which might be considered as pioneers of MS fragmentation-based platforms to search peptide-linker remainders, were reviewed thoroughly as well [49][50][51]. Recent advances in mass spectrometers technology and analysis

• nowadays mass spectrometric hardware and bioinformatic software tools. Review Principles of chemical proteomics workflows The linker connects the affinity or reporter tag to the probe–protein conjugate to offer several principally different analytical pathways (Figure 3) [53][54]. Although chemical

Factors influencing the performance of organocatalysts immobilised on solid supports: A review

• Zsuzsanna Fehér,
• Dóra Richter,
• Gyula Dargó and
• József Kupai

Beilstein J. Org. Chem. 2024, 20, 2129–2142, doi:10.3762/bjoc.20.183

• and selectivity. Proper design of the linker between the catalytic sites and the support surface, along with careful selection of the solid support, can help to optimise the accessibility of the active sites and mitigate this limitation [65][125]. Consequently, the properties of the supported

• organocatalyst also depend on the density of catalytic sites on the support surface, as well as the nature and length of the linker [8]. Additionally, the linker itself could serve as a competitive active site. In the case of enantioselective catalysis, the linker could promote the formation of racemic products

• derivatives 29–31 were immobilised on this polymer support by utilising its reactive epoxy groups (Scheme 9). These structurally diverse precatalysts were prepared by modifying the cinchona skeleton at different positions to investigate how the amino group-containing linker affects them. The immobilised

Cage-like microstructures via sequential Ugi reactions in aqueous emulsions

• Rita S. Alqubelat,
• Yaroslava A. Menzorova and
• Maxim A. Mironov

Beilstein J. Org. Chem. 2024, 20, 2078–2083, doi:10.3762/bjoc.20.179

• droplets. Fixing this structure with a cross-linker opened the way to the one-step synthesis of colloidosomes with large pores on the surface. Results and Discussion Previously, we have obtained stable colloidal particles by ionic gelation of carboxymethylcellulose (CMC) and low-molecular-weight chitosan

2-Heteroarylethylamines in medicinal chemistry: a review of 2-phenethylamine satellite chemical space

• Carlos Nieto,
• Alejandro Manchado,
• Ángel García-González,
• David Díez and
• Narciso M. Garrido

Beilstein J. Org. Chem. 2024, 20, 1880–1893, doi:10.3762/bjoc.20.163

• techniques in any medicinal chemistry program – knowledge-based or computationally aided – is bioisosteric replacement, where a particular arrangement of atoms, such as a functional group, chain, ring, linker, etc., is substituted by motifs with size, electronic, and physicochemical characteristics

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• pentacyclic secondary amine 97 bearing the ester linker in the C1 side chain in one pot. After removal of SfmC by precipitation and centrifugation, the reaction mixture containing secondary amine 97 was subjected to the reductive amination using 2-picoline borane as a hydride source, yielding tertiary amine

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• UV light, we have previously reported a design of amphiphilic donor–acceptor Stenhouse adducts (DASAs) controlled by white light. Herein, we present a series of DASA amphiphiles (DAs) with minor structural modifications on the alkyl linker chain length connecting the DASA motif with the hydrophilic

• design of the reported DAs, we designed and synthesized a series of DAs featuring a second-generation DASA switching motif and different chain lengths of the alkyl linker (i.e., DAn) that connects the DASA indoline motif with the hydrophilic part (i.e., the carboxylic acid motif, Scheme 1). The alkyl

• linker length allowed fine adjustment of the hydrophobic volume of DAn, enabling significant packing parameters changes upon supramolecular assembly in aqueous medium. On a microscopic length scale, the expected supramolecular assembly and the related assembly transformations can be controlled

Bioinformatic prediction of the stereoselectivity of modular polyketide synthase: an update of the sequence motifs in ketoreductase domain

• Changjun Xiang,
• Shunyu Yao,
• Ruoyu Wang and
• Lihan Zhang

Beilstein J. Org. Chem. 2024, 20, 1476–1485, doi:10.3762/bjoc.20.131

• KRC, the N-terminal helix αB and the lid region αFG located at the C-terminal of KRC (Figure 2d). Indeed, this lid region exhibits a direct interaction with the DH and DH-KR linker (Figure 2c). However, such interaction was not observed between the N-terminal helix αB and DH in the crystal structure

Synthesis and characterization of water-soluble C₆₀–peptide conjugates

• Yue Ma,
• Lorenzo Persi and
• Yoko Yamakoshi

Beilstein J. Org. Chem. 2024, 20, 777–786, doi:10.3762/bjoc.20.71

• -Lys (5a) was recorded in D2O. As shown in Figure 5, the spectrum of 5a (upper spectrum) clearly shows peaks for protons corresponding to the fulleropyrrolidine part, which are in line with the peaks in the spectrum of the C60 Prato monoadduct (lower spectrum), linker part, and oligo-Lys side chain

• , and HMBC spectra (Figures S3–S9, Supporting Information File 1), all peaks corresponding to the pyrrolidine part, linker part, and oligo-Lys part were assigned as shown in the chemical structure. In the sp2 region of 5a (Figure 6a, top), 17 signals (1C × 3 + 2C × 13) were observed similarly to the

Synthesis of new representatives of A₃B-type carboranylporphyrins based on meso-tetra(pentafluorophenyl)porphyrin transformations

• Victoria M. Alpatova,
• Evgeny G. Rys,
• Elena G. Kononova and
• Valentina A. Ol'shevskaya

Beilstein J. Org. Chem. 2024, 20, 767–776, doi:10.3762/bjoc.20.70

• tetrapyrrole compounds [9] since the delivery of a drug at a specific area in the body has vital importance to treat diseases. An alternative approach to solve this problem focused on the postfunctionalization of the porphyrin macrocycle with different linker groups capable for targeting conjugation of these

• conjugates with functionalized linker groups suitable for bioconjugation or which may be efficient for PDT and BNCT improvement. Results and Discussion Synthesis Nucleophilic substitution reactions of the four p-fluorine atoms in 5,10,15,20-tetrakis(pentafluorophenyl)porphyrin (1) are well studied [15][16

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• biomimetic linker to imitate peptide-S-PCP [46], which not only employed in the efficient cyclization of tyrocidine A (1) but also worked on hundreds of other linear substrates, some of which exhibited broad-spectrum activity against both Gram-positive and Gram-negative organisms. By combining natural

• exhibits a cyclization activity against a peptide methyl ester that is feeble but readily detectable [61]. This finding indicates that SurE has a high tolerance for leaving groups. In the light of this property, Wakimoto, Matsuda, and co-workers discovered that ethylene glycol (EG) can act as a linker on

• manner catalyzed by homolog WolJ [63] and SurE G235L (Scheme 5b). Additionally, the above mentioned type I TE, TycC TE, can also tolerate ethylene glycol as a leaving group and gave tyrocidine A (1) in 70% yield, indicating that this convenient bifunctional linker may have a comparable applied range to N

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• effect remains if the local structure of the linker consisting of an alkyl group and a pyrene group is maintained. Therefore, it is likely that the kinetic behavior of a protein immobilized with a single PASE linker exhibits an activation barrier-type energy surface between the bi-stable conformations on

• of molecules based on nanoscience can lead to a better understanding of the behavior of target biomaterials and improve the sensitivity of specific dynamical systems, such as biosensors. In this study, we investigate the behavior of proteins immobilized with linker molecules on graphene substrates

• . It is known that graphene may not easily adsorb proteins [1]. On the other hand, proteins can be immobilized on graphene by using appropriate linker molecules, such as 1-pyrenebutanoic acid succinimidyl ester (PASE). Actually, pyrene and its derivatives have been demonstrated to form stable bindings

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• introduced a pegylated biotin linker at the 2′-OH group of ʟ-Phe-AMS and confirmed that the probe retains the binding activities toward the A-domain of GrsA, a gramicidin S synthetase. Aldrich et al. developed a Sal-AMS-based activity-based probe (ABP) to profile MbtA in M. tuberculosis [12]. In contrast, we

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• of Fe3O4 nanoparticles (Scheme 15) [101][102]. This organic–inorganic hybrid material was synthesized by the immobilization of the dodecatungstovanadophosphoric acid (HPA) on TPI-Fe3O4 with N-[3-(triethoxysilyl)propyl]isonicotinamide (TPI), acting as the linker for the heterogeneous catalyst, while

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• to analyse when data were recorded in CDCl3. Changing the NMR solvent to CD3OD greatly reduced the complexity of the spectra [21][22][23]. Since 7 possessed an azido group as part of the linker, removal of the Troc group under reductive conditions was ruled out due to probable chemoselectivity issues

• sulfated 2 (Figure 2). This showed that regioselective 3’-O-sulfation had been achieved, with HRMS also indicating that only one sulfate group was present. Conclusion An efficient synthesis of the important TF and 3’-Su-TF antigens equipped with a TEG-N3 linker to allow formation of various conjugates has

• (td, J = 10.6, 3.6 Hz, 1H, H-2), 4.26 (dd, J = 12.6, 2.2 Hz, 1H, H-6(A)), 4.15 (dd, J = 12.5, 1.7 Hz, 1H, H-6(B)), 3.90–3.77 (m, 2H, H-5, CH2(A)Linker), 3.76–3.59 (m, 9H, CH2(B)Linker, 4 × CH2(Linker)), 3.39 (t, J = 5.1 Hz, 2H, CH2(Linker)), 2.07 (s, 3H, CH3(OAc)), 1.08 (s, 9H, C(CH3)3(DTBS)), 1.02 (s

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• and Molecules, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium 10.3762/bjoc.20.3 Abstract A novel and efficient base-catalyzed, transition-metal-free method for the synthesis of diheterocyclic compounds connected by an amidine linker, including apart from the common

• comprising pyrimidine and 1,2,3-triazole rings connected with an amidine linker by the cycloaddition reaction of 3,3-diaminoacrylonitriles with 6-azidopyrimidine (Scheme 1C). Based on this idea, an efficient and novel method with wide scope has been developed which was then applied to obtain a variety of

N-Boc-α-diazo glutarimide as efficient reagent for assembling N-heterocycle-glutarimide diads via Rh(II)-catalyzed N–H insertion reaction

• Grigory Kantin,
• Pavel Golubev,
• Alexander Sapegin,
• Alexander Bunev and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2023, 19, 1841–1848, doi:10.3762/bjoc.19.136

• diazocarbonyl reagent is presented for the first time. The protective group is removed without acid catalysis with near quantitative yields. New benzotriazole derivatives containing functional groups capable of participating in the subsequent modification for linker attachment to assemble the PROTAC molecule