Impact of Pseudomonas aeruginosa quorum sensing signaling molecules on adhesion and inflammatory markers in endothelial cells

• Carmen Curutiu,
• Florin Iordache,
• Veronica Lazar,
• Aurelia Magdalena Pisoschi,
• Aneta Pop,
• Mariana Carmen Chifiriuc and
• Alina Maria Hoban

Beilstein J. Org. Chem. 2018, 14, 2580–2588, doi:10.3762/bjoc.14.235

• , and this effect appears to be related to NFκB activation. These autoinducers (AIs) stimulate the production of membrane-associated prostaglandin E (PGE) and PGE2 but not PGE from cytosol. It is known that PGE2 plays a role in inducing mucus secretion, vasodilatation and edema, acting as a lipid

A self-assembled photoresponsive gel consisting of chiral nanofibers

• Lei Zou,
• Dan Han,
• Zhiyi Yuan,
• Dongdong Chang and
• Xiang Ma

Beilstein J. Org. Chem. 2018, 14, 1994–2001, doi:10.3762/bjoc.14.174

• and co-workers [20][21][22][23][24][25][26][27][28][29][30][31] have built a multifunctional controllable gel system, which utilized L-glutamic lipid to construct nanofibers, nanotwists, and nanotubes with the property of chirality. Azobenzene, which is structurally photosensitive, is widely chosen to

• construct optically controlled systems [17][30][32][33][34][35]. This moiety is also frequently employed as a building block because of its strong π–π stacking in nonpolar solvents. Herein, a novel compound 3 containing both chiral L-glutamic lipid and azobenzene was designed and synthesized (Scheme 1). It

Synthesis of new p-tert-butylcalix[4]arene-based polyammonium triazolyl amphiphiles and their binding with nucleoside phosphates

• Vladimir A. Burilov,
• Guzaliya A. Fatikhova,
• Mariya N. Dokuchaeva,
• Ramil I. Nugmanov,
• Diana A. Mironova,
• Pavel V. Dorovatovskii,
• Victor N. Khrustalev,
• Svetlana E. Solovieva and
• Igor S. Antipin

Beilstein J. Org. Chem. 2018, 14, 1980–1993, doi:10.3762/bjoc.14.173

• diacetylene surfactant matrix by amphiphilic receptors with subsequent photopolymerization is a commonly used approach for the design of colorimetric analytical devices [50]. Taking into account the cationic nature of the synthesized calixarene macrocycles, the amido-diacetylene lipid bearing a terminal amino

• at room temperature to give a thin lipid film on the glass surface, which was dried under reduced pressure (0.01 Torr) for 2 h to remove all traces of organic solvent. Then a buffer solution (MES, 50 mM, pH 6.5) was added. The samples were then sonicated for 2 h at 60 °C. The resulting vesicle

Artificial bioconjugates with naturally occurring linkages: the use of phosphodiester

• Takao Shoji,
• Hiroki Fukutomi,
• Yohei Okada and
• Kazuhiro Chiba

Beilstein J. Org. Chem. 2018, 14, 1946–1955, doi:10.3762/bjoc.14.169

• Information File 1 for side reactions), both the lipid 9 and the protected sugar 10 were also effectively conjugated to the activated 5’-terminus under the same reaction conditions to give the desired bioconjugates 11 and 12, respectively (Table 2, entries 3 and 4). We finally examined whether relatively

Design and biological characterization of novel cell-penetrating peptides preferentially targeting cell nuclei and subnuclear regions

• Anja Gronewold,
• Mareike Horn and
• Ines Neundorf

Beilstein J. Org. Chem. 2018, 14, 1378–1388, doi:10.3762/bjoc.14.116

• nuclei; cell-penetrating peptides; nucleoli; subcellular targeting; Introduction Various drugs act on targets that are located within the nucleus, the control center of the eukaryotic cell. A lipid bilayer membrane, which is perforated with nuclear pore complex structures through which the transfer of

• C-terminal aa of the cationic antimicrobial peptide CAP18 [18]. When it comes in contact with lipid membranes, it forms a helical structure, probably supporting membrane interaction [19]. However, the main uptake mechanism that was observed followed endocytotic processes, although we have seen that

• residues within the sequences. These effects were already described by other groups working with highly cationic CPPs [29][30][31][32]. Moreover, the formation of amphipathic α-helices is often one major factor for efficient peptide/lipid interaction, initiating the following internalization process [33

On the design principles of peptide–drug conjugates for targeted drug delivery to the malignant tumor site

• Eirinaios I. Vrettos,
• Gábor Mező and
• Andreas G. Tzakos

Beilstein J. Org. Chem. 2018, 14, 930–954, doi:10.3762/bjoc.14.80

• conducted via a rationally designed linker able to release the drug inside the cancer microenvironment [19]. The ideal targeting molecular device would consist of the following modules: a) the cytotoxic agent (drug), b) the transporting - drug delivery vehicle (i.e., lipid, mannan [28][29][30]), c) the

Crystal structure of the inclusion complex of cholesterol in β-cyclodextrin and molecular dynamics studies

• Elias Christoforides,
• Andreas Papaioannou and
• Kostas Bethanis

Beilstein J. Org. Chem. 2018, 14, 838–848, doi:10.3762/bjoc.14.69

• increased safety in NPC animal models [12]. Moreover, superstructures of cyclodextrins like mono-lactose-appended β-CD [13] and biocleavable pluronic/β-CD-based polyrotaxanes [14] as well as PEG-lipid micelles (DSPE-PEG) in combination with HP-β-CD [15] have shown enhanced therapeutic effects and exhibit a

Nanoreactors for green catalysis

• M. Teresa De Martino,
• Loai K. E. A. Abdelmohsen,
• Floris P. J. T. Rutjes and
• Jan C. M. van Hest

Beilstein J. Org. Chem. 2018, 14, 716–733, doi:10.3762/bjoc.14.61

• hydrophobic membrane and as a consequence a higher reaction rate. Dergunov et al. reported on the design of a porous polymeric nanoreactor with a lipid bilayer for coupling reactions [87]. These nanocapsules were loaded with palladium catalysts and successfully used in Suzuki, Sonogashira and Heck cross

Aminosugar-based immunomodulator lipid A: synthetic approaches

• Alla Zamyatina

Beilstein J. Org. Chem. 2018, 14, 25–53, doi:10.3762/bjoc.14.3

• cytokines, chemokines, prostaglandins and reactive oxygen species which manifest an acute inflammatory response to infection. The “endotoxic principle” of LPS resides in its amphiphilic membrane-bound fragment glycophospholipid lipid A which directly binds to the TLR4·MD-2 receptor complex. The lipid A

• content of LPS comprises a complex mixture of structural homologs varying in the acylation pattern, the length of the (R)-3-hydroxyacyl- and (R)-3-acyloxyacyl long-chain residues and in the phosphorylation status of the β(1→6)-linked diglucosamine backbone. The structural heterogeneity of the lipid A

• isolates obtained from bacterial cultures as well as possible contamination with other pro-inflammatory bacterial components makes it difficult to obtain unambiguous immunobiological data correlating specific structural features of lipid A with its endotoxic activity. Advanced understanding of the

Synthesis of naturally-derived macromolecules through simplified electrochemically mediated ATRP

• Paweł Chmielarz,
• Tomasz Pacześniak,
• Katarzyna Rydel-Ciszek,
• Izabela Zaborniak,
• Paulina Biedka and
• Andrzej Sobkowiak

Beilstein J. Org. Chem. 2017, 13, 2466–2472, doi:10.3762/bjoc.13.243

• ions [27]. Quercetin inhibits xanthine oxidase [27][28][29], inhibits lipid peroxidation in vitro [27][28][30], and scavenges oxygen radicals [27][28][31][32][33]. There is a tremendous importance of this antioxidant in the prevention of a range of cardiovascular diseases [27][34][35], cancer [26][27

Enzymatic synthesis of glycosides: from natural O- and N-glycosides to rare C- and S-glycosides

• Jihen Ati,
• Pierre Lafite and
• Richard Daniellou

Beilstein J. Org. Chem. 2017, 13, 1857–1865, doi:10.3762/bjoc.13.180

• donor (lipid, nucleotide…) [13]. It is considered that GTs are encoded by 1% of total genes, and over 300 000 representatives of GT superfamily have been classified according to their nucleotide sequence into 103 subfamilies [8]. Depending on the conservation of the anomeric atom stereochemistry of the

The chemistry and biology of mycolactones

• Matthias Gehringer and
• Karl-Heinz Altmann

Beilstein J. Org. Chem. 2017, 13, 1596–1660, doi:10.3762/bjoc.13.159

• , based on studies investigating the stability of M. ulcerans extracts towards different chemicals and enzymes [31]. The true nature of the toxin, however, remained elusive until 1998, when Small and co-workers identified a polyketide isolated from acetone-soluble M. ulcerans lipid extracts as the key

• was the correct one [57]. Besides mycolactone E (6), a minor metabolite (7) with a keto group replacing the hydroxy function at the C13’-position was found in M. ulcerans ecovar liflandii lipid extracts [50][56]. Again, the structure was finally established by Kishi and co-workers using a combination

Chemical systems, chemical contiguity and the emergence of life

• Terrence P. Kee and
• Pierre-Alain Monnard

Beilstein J. Org. Chem. 2017, 13, 1551–1563, doi:10.3762/bjoc.13.155

• alternative approaches in relation to the emergence of specific biomolecules and biochemical assemblies. The pursuance of such, normally parallel, approaches has led to the development of hypotheses either called by their chemical embodiment, such the lipid- [5], PAH- (polycyclic aromatic hydrocarbons) [6

• acid monomers has been achieved in this manner: When amphiphile vesicles or liposomes are dried in the presence of solutes on a silicate support, a system of stacked lipid bilayers with intercalated solutes is formed [52]. In this arrangement, the nucleotides are optimally spaced to react and form

• , nor preclude the “re”-dispersion of the lipid phases into dispersed aggregates with encapsulated catalysis products [52]. Chemical systems and chemical contiguity in the dispersed state The chemical systems aspect during the emergence of cell-like entities can also be highlighted once the chemical

A new member of the fusaricidin family – structure elucidation and synthesis of fusaricidin E

• Marcel Reimann,
• Louis P. Sandjo,
• Luis Antelo,
• Eckhard Thines,
• Isabella Siepe and
• Till Opatz

Beilstein J. Org. Chem. 2017, 13, 1430–1438, doi:10.3762/bjoc.13.140

• ; Introduction Fusaricidins are lipid-modified non-ribosomal cyclic hexadepsipeptides containing four D-amino acids and two L-amino acids. All of them carry an L-threonine linked to a unique 15-guanidino-3-hydroxypentadecanoic acid side chain through the N-terminus. This particular ω-functionalized lipid side

Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research

• Ben Shirt-Ediss,
• Sara Murillo-Sánchez and
• Kepa Ruiz-Mirazo

Beilstein J. Org. Chem. 2017, 13, 1388–1395, doi:10.3762/bjoc.13.135

• variety of processes that take place across their boundaries – lipid membranes in/on which highly sophisticated mechanisms of transport and energy transduction reside, making possible the maintenance of the system, as a whole, in open, far-from-equilibrium conditions. In a metaphoric sense, a cell is a

• longer we postpone the appearance of chemical encapsulated systems, the more intractable the problem of compartmentalization will surely become. Indeed, if reaction networks could develop their catalytic efficiency in compartment-free scenarios, their eventual encapsulation within lipid vesicles would

• negative and positive feedback loops (autocatalytic cycles) that can take place within the internal water pool, the presence of closed lipid bilayers strongly restricts the free diffusion of the various soluble species involved, allows the selective passage of precursors and excludes water in limited areas

An improved preparation of phorbol from croton oil

• Alberto Pagani,
• Simone Gaeta,
• Andrei I. Savchenko,
• Craig M. Williams and
• Giovanni Appendino

Beilstein J. Org. Chem. 2017, 13, 1361–1367, doi:10.3762/bjoc.13.133

• , since the irritancy of phorbol esters is critically dependent on their acylation profile [6]. However, the native phorboid profile of croton oil is still poorly characterized in terms of analytical profile [24], and the recovery of the native highly lipophilic phorboid esters from the lipid matrix of

BODIPY-based fluorescent liposomes with sesquiterpene lactone trilobolide

• Ludmila Škorpilová,
• Silvie Rimpelová,
• Michal Jurášek,
• Miloš Buděšínský,
• Jana Lokajová,
• Roman Effenberg,
• Petr Slepička,
• Tomáš Ruml,
• Eva Kmoníčková,
• Pavel B. Drašar and
• Zdeněk Wimmer

Beilstein J. Org. Chem. 2017, 13, 1316–1324, doi:10.3762/bjoc.13.128

• formulation (ratio 4:4:1:1, respectively). A hydrophobic film prepared by evaporation of a lipid–chloroform solution was hydrated with physiological solution. The desired unilamellar vesicles were obtained by homogenization of the dispersion through a 100 nm pore size polycarbonate filter. Characterization of

Biomimetic molecular design tools that learn, evolve, and adapt

• David A Winkler

Beilstein J. Org. Chem. 2017, 13, 1288–1302, doi:10.3762/bjoc.13.125

• the sterol and fatty acid biosynthetic pathways were activated in the MSCs, and subsequent experiments validated the model predictions of increased levels of proteins in these pathways and the formation of lipid rafts on the cell membranes. In silico sparse feature selection thus revealed a hitherto

Glycoscience@Synchrotron: Synchrotron radiation applied to structural glycoscience

• Serge Pérez and
• Daniele de Sanctis

Beilstein J. Org. Chem. 2017, 13, 1145–1167, doi:10.3762/bjoc.13.114

• offers another example of difficulty in terms of single crystal growth. Glycolipids (or lipo-oligosaccharides) comprise a carbohydrate moiety covalently linked to a lipid that confers on them an amphiphilic character, which makes them reluctant to crystallize. One member of the family is tricolorin A (L

• , UDP-Gal, GDP-Man, and the GTs that process them are often referred to as Leloir enzymes. In certain cases, lipid-linked sugars, e.g., dolichol phosphate saccharides and unsubstituted phosphates are also utilized. The transfer of saccharides by GTs is regio-specific and stereo-specific: depending on

• variants of these folds), namely GT-A and GT-B (Figure 8). Different folds are nevertheless observed for GTs that use lipid phosphate donor substrates. The achievement of the enzyme-transition state complex requires a particular arrangement of the active site that is the result of concomitant protein

From chemical metabolism to life: the origin of the genetic coding process

• Antoine Danchin

Beilstein J. Org. Chem. 2017, 13, 1119–1135, doi:10.3762/bjoc.13.111

• function associated to this view is that the cell separates between an inside and an outside. In 1935, James Danielli proposed with Hugh Davson that this embodiment was achieved by formation of a bilayer made of amphiphilic lipid molecules [11]. This process is entropy-driven (life belongs to physics, it

• to understand the way proteins interact with membrane lipids, and our knowledge in the domain is still far from complete. There exist many models describing the operation (including ideas about the asymmetry of the bilayer, its local changes and lipid rafts). Work exploring the way proteins are

• membrane differs during states of growth and non-growth. The former implies a constructive function of the membrane. Proteins are the effectors of this function with the key operation of allowing protein insertion within the membrane. Studies investigating spontaneous evolution of lipid vesicles showed

Correlation of surface pressure and hue of planarizable push–pull chromophores at the air/water interface

• Frederik Neuhaus,
• Fabio Zobi,
• Gerald Brezesinski,
• Marta Dal Molin,
• Stefan Matile and
• Andreas Zumbuehl

Beilstein J. Org. Chem. 2017, 13, 1099–1105, doi:10.3762/bjoc.13.109

• ; membrane pressure; membrane probes; monolayers; Introduction Physical triggers are a major regulator of biological processes. The lateral bilayer membrane pressure, e.g., influences the nucleation [1] and shape changes [2] of lipid domains, it gates mechanosensitive pores [3] and globally organizes cell

• directionally into lipid bilayer membranes. In order to use fluorescent flipper mechanophores for biological measurements, it is crucial to understand the exact relation between surface pressure and their spectroscopic properties. In earlier studies [8], the fluorescence was qualitatively determined in

• different lipid environments: the mechanosensitive probes (1.3 mol %) were added to large unilamellar vesicles (LUV) of either DPPC (dipalmitoyl-sn-glycero-3-phosphocholine) or DOPC (dioleoyl-sn-glycero-3-phosphocholine) at different temperatures. The flipper probes in DPPC, but not in DOPC, showed a red

Glyco-gold nanoparticles: synthesis and applications

• Federica Compostella,
• Olimpia Pitirollo,
• Alessandro Silvestri and
• Laura Polito

Beilstein J. Org. Chem. 2017, 13, 1008–1021, doi:10.3762/bjoc.13.100

• peanut agglutinin [25]. In this case, the glycosyl residue is not coated on the gold surface by means of a thiol moiety but exploiting the strain-promoted azide–alkyne cycloaddition (SPAAC) to covalently link an azido galactoside on a lipid cyclooctyne. In this manner, the amphiphilic glyco-lipid can be

Aggregation behaviour of a single-chain, phenylene-modified bolalipid and its miscibility with classical phospholipids

• Simon Drescher,
• Vasil M. Garamus,
• Christopher J. Garvey,
• Annette Meister and
• Alfred Blume

Beilstein J. Org. Chem. 2017, 13, 995–1007, doi:10.3762/bjoc.13.99

• -C18pPhC18-PC is partially miscible with saturated phosphatidylcholines; however, closed lipid vesicles with an increased thermal stability were not found. Instead, bilayer fragments and disk-like aggregates are formed. Keywords: aggregation behaviour; bolaamphiphiles; bolalipids; membrane lipids; mixing

• [23]. This simplification strategy led in our group to the synthesis of dotriacontane-1,32-diylbis[2-(trimethylammonio)ethylphosphate] (PC-C32-PC) [24][25], the simplest bola model lipid consisting of two phosphocholine (PC) headgroups connected by a long, unmodified C32 alkyl chain. If PC-C32-PC is

• ., DPPC did not result in the formation of stabilized lipid vesicles and elongated micelles as well as bilayer fragments were found instead. We have now synthesized a bolalipid with phenyl modification and a slightly longer alkyl chain, PC-C18pPhC18-PC (Figure 1), to investigate a possible chain length

Use of costic acid, a natural extract from Dittrichia viscosa, for the control of Varroa destructor, a parasite of the European honey bee

• Kalliopi Sofou,
• Demosthenis Isaakidis,
• Apostolos Spyros,
• Anita Büttner,
• Athanassios Giannis and
• Haralambos E. Katerinopoulos

Beilstein J. Org. Chem. 2017, 13, 952–959, doi:10.3762/bjoc.13.96

• essential oil were found active against Staphylococcus epidermidis, Streptococcus foecalis and Proteus vulgaris [36]. The methanol extract of the aerial parts of the plant showed antioxidant activity in a study on lipid peroxidation of rat liver microsomes [30]. n-Hexane extracts from air dried D. viscosa

Lipids: fatty acids and derivatives, polyketides and isoprenoids

• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2017, 13, 793–794, doi:10.3762/bjoc.13.78

• constituents, for energy storage, or as signaling molecules. If the human lipid metabolism is disturbed, this may lead to serious illnesses such as adipositas and its subsequent complications including cardiovascular diseases or diabetes mellitus. Other consequences of a disordered lipid metabolism include

• , sphingolipids and glycolipids. Lipids also constitute important post-translational protein modifications in lipoproteins. The amphiphilic nature of compounds such as phospholipids with a polar headgroup and a long apolar chain results in the spontaneous formation of lipid bilayers in aqueous environments. This

• was likely a crucial process for the origin of life – and certainly still is for all existing living systems that necessarily contain lipid membranes with their interesting and finely balanced biophysical properties. In prokaryotes, these membranes define the outer surface of individual cells, while