Photobleaching of YOYO-1 in super-resolution single DNA fluorescence imaging

Scholarly Works

• Ali, T. H.; Alhasan, A.; Naeem, H. S.; Jaber, I.; Abdulhussein, R. S.; Al-Rashedi, N. A. M.; Hasbullah, S. A. Fluorescence dye-conjugated magnetic core-shell silica nanoparticles for enhanced nucleic acid visualization. RSC advances 2025, 15, 24289–24303. doi:10.1039/d5ra01931a
• Piantanida, L.; Li, I. T. S.; Hughes, W. L. Advancements in DNA-PAINT: applications and challenges in biological imaging and nanoscale metrology. Nanoscale 2025, 17, 14016–14034. doi:10.1039/d4nr04544k
• Mohanta, D.; Dvirnas, A.; Ambjörnsson, T. Random sampling of ligand arrangements on a one-dimensional lattice. Physical review. E 2025, 111, 014412. doi:10.1103/physreve.111.014412
• Pandey, S.; Gautam, D.; Chen, J. Measuring the Adsorption Cross Section of YOYO-1 to Immobilized DNA Molecules. The journal of physical chemistry. B 2024, 128, 7254–7262. doi:10.1021/acs.jpcb.4c03359
• Gautam, D.; Pandey, S.; Chen, J. Effect of Flow Rate and Ionic Strength on the Stabilities of YOYO-1 and YO-PRO-1 Intercalated in DNA Molecules. The journal of physical chemistry. B 2023, 127, 2450–2456. doi:10.1021/acs.jpcb.3c00777
• Chen, J. Simulating stochastic adsorption of diluted solute molecules at interfaces. AIP advances 2022, 12, 015318. doi:10.1063/5.0064140
• Azuma, N.; Fukuzawa, K.; Itoh, S. Super-localization of individual fluorophores along a DNA strand in a microchannel. Applied Physics Letters 2021, 119, 023701. doi:10.1063/5.0046939
• Saini, A.; Messenger, H.; Kisley, L. Fluorophores “Turned-On” by Corrosion Reactions Can Be Detected at the Single-Molecule Level. ACS applied materials & interfaces 2020, 13, 2000–2006. doi:10.1021/acsami.0c18994
• Yardimci, S.; Burnham, D. R.; Terry, S. Y.; Yardimci, H. Three-dimensional super-resolution fluorescence imaging of DNA. Scientific reports 2020, 10, 12504. doi:10.1038/s41598-020-68892-5
• J, C. Monte Carlo Simulation of Stochastic Adsorption of Diluted Solute Molecules at an Interface. 2020. doi:10.26434/chemrxiv.12402404.v1
• Wang, J.; Wan, J.; Yang, N.; Li, Q.; Wang, D. Hollow multishell structures exercise temporal–spatial ordering and dynamic smart behaviour. Nature reviews. Chemistry 2020, 4, 159–168. doi:10.1038/s41570-020-0161-8
• Yardimci, S.; Burnham, D. R.; Terry, S. Y.; Yardimci, H. Three-dimensional super-resolution fluorescence imaging of DNA. Cold Spring Harbor Laboratory 2019, 796151. doi:10.1101/796151
• Pyle, J. R.; Piecco, K. W. E. S.; Vicente, J. R.; Chen, J. In Situ Sensing of Reactive Oxygen Species on Dye-Stained Single DNA Molecules under Illumination. Langmuir : the ACS journal of surfaces and colloids 2019, 35, 11308–11314. doi:10.1021/acs.langmuir.9b01822
• Stehr, F.; Stein, J.; Schueder, F.; Schwille, P.; Jungmann, R. Flat-top TIRF illumination boosts DNA-PAINT imaging and quantification. Nature communications 2019, 10, 1268. doi:10.1038/s41467-019-09064-6
• Kisley, L. Single molecule spectroscopy at interfaces. Spectroscopy and Dynamics of Single Molecules; Elsevier, 2019; pp 117–161. doi:10.1016/b978-0-12-816463-1.00003-1
• Wang, L.; Pyle, J. R.; Cimatu, K.; Chen, J. Ultrafast Transient Absorption Spectra of Photoexcited YOYO-1 molecules call for additional investigations of their fluorescence quenching mechanism. Journal of photochemistry and photobiology. A, Chemistry 2018, 367, 411–419. doi:10.1016/j.jphotochem.2018.09.012
• Luckner, M.; Wanner, G. Precise and economic FIB/SEM for CLEM: with 2 nm voxels through mitosis. Histochemistry and cell biology 2018, 150, 149–170. doi:10.1007/s00418-018-1681-x

Explore citations to this article at