Nonclassical dynamic modeling of nano/microparticles during nanomanipulation processes

• Moharam Habibnejad Korayem,
• Ali Asghar Farid and
• Rouzbeh Nouhi Hefzabad

Beilstein J. Nanotechnol. 2020, 11, 147–166, doi:10.3762/bjnano.11.13

• time simulation using the Lundberg cylindrical contact model for DNA. A) Present study simulation method. B) Korayem and Saraee simulation [16]. Comparison of the deflections of a polystyrene nanorod using classical and nonclassical models assuming l/d = 0.25. Comparison of polystyrene nanorod

Molecular architectonics of DNA for functional nanoarchitectures

• Debasis Ghosh,
• Lakshmi P. Datta and
• Thimmaiah Govindaraju

Beilstein J. Nanotechnol. 2020, 11, 124–140, doi:10.3762/bjnano.11.11

• Debasis Ghosh Lakshmi P. Datta Thimmaiah Govindaraju Bioorganic Chemistry Laboratory, New Chemistry Unit and The School of Advanced Materials (SAMat), Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur P. O., Bengaluru 560064, Karnataka, India 10.3762/bjnano.11.11 Abstract DNA is

• the key biomolecule central to almost all processes in living organisms. The eccentric idea of utilizing DNA as a material building block in molecular and structural engineering led to the creation of numerous molecular-assembly systems and materials at the nanoscale. The molecular structure of DNA is

• believed to have evolved over billions of years, with structure and stability optimizations that allow life forms to sustain through the storage and transmission of genetic information with fidelity. The nanoscale structural characteristics of DNA (2 nm thickness and ca. 40–50 nm persistence length) have

Internalization mechanisms of cell-penetrating peptides

• Ivana Ruseska and
• Andreas Zimmer

Beilstein J. Nanotechnol. 2020, 11, 101–123, doi:10.3762/bjnano.11.10

• process [30]. Membrane perturbation as an internalization mechanism has also been proposed for the MPG-family of amphipathic peptides (Figure 2) [3][17][31]. MPG carriers are amphipathic peptides able to form stable complexes with antisense oligonucleotides, plasmid DNA, siRNA and peptides, which improve

The different ways to chitosan/hyaluronic acid nanoparticles: templated vs direct complexation. Influence of particle preparation on morphology, cell uptake and silencing efficiency

• Arianna Gennari,
• Julio M. Rios de la Rosa,
• Erwin Hohn,
• Maria Pelliccia,
• Enrique Lallana,
• Roberto Donno,
• Annalisa Tirella and
• Nicola Tirelli

Beilstein J. Nanotechnol. 2019, 10, 2594–2608, doi:10.3762/bjnano.10.250

• luciferase silencing using nanoparticles obtained via a templated or direct complexation method. The results are expressed as the percentage of luciferase expression relative to the average RLUs of the negative control (i.e., cells pre-transfected with the pGL3 plasmid DNA, without anti-Luc siRNA treatment

Small protein sequences can induce cellular uptake of complex nanohybrids

• Jan-Philip Merkl,
• Malak Safi,
• Christian Schmidtke,
• Fadi Aldeek,
• Johannes Ostermann,
• Tatiana Domitrovic,
• Sebastian Gärtner,
• John E. Johnson,
• Horst Weller and
• Hedi Mattoussi

Beilstein J. Nanotechnol. 2019, 10, 2477–2482, doi:10.3762/bjnano.10.238

• various proteins, and among them the human transferrin protein was found to induce the highest intracellular uptake following 24 h incubation of these hybrids with cell cultures [5]. In the second, functional colloidal superstructures assembled using DNA linkers elicited a reduction in the response of

Integration of sharp silicon nitride tips into high-speed SU8 cantilevers in a batch fabrication process

• Nahid Hosseini,
• Matthias Neuenschwander,
• Oliver Peric,
• Santiago H. Andany,
• Jonathan D. Adams and
• Georg E. Fantner

Beilstein J. Nanotechnol. 2019, 10, 2357–2363, doi:10.3762/bjnano.10.226

• fabrication yield and an easy bottom-up recipe. Genolet et al. have shown AFM images of DNA-plasmid molecules using SU8 cantilevers [21]. SU8-based Hall effect sensor cantilevers have also been presented by Mouaziz and co-workers [22]. In addition, SU8 cantilevers have shown a performance of high-speed

Targeted therapeutic effect against the breast cancer cell line MCF-7 with a CuFe₂O₄/silica/cisplatin nanocomposite formulation

• B. Rabindran Jermy,
• Vijaya Ravinayagam,
• Widyan A. Alamoudi,
• Dana Almohazey,
• Hatim Dafalla,
• Lina Hussain Allehaibi,
• Abdulhadi Baykal,
• Muhammet S. Toprak and
• Thirunavukkarasu Somanathan

Beilstein J. Nanotechnol. 2019, 10, 2217–2228, doi:10.3762/bjnano.10.214

• ). In vitro anticancer studies Cisplatin is a well-known efficient anticancer drug that binds to DNA blocking cell division. As with many anticancer drugs, cisplatin has off-target toxicity, mainly in the kidneys, liver, heart, nerves, and ears. In addition, most patients develop chemoresistance to

Nitrogen-vacancy centers in diamond for nanoscale magnetic resonance imaging applications

• Alberto Boretti,
• Lorenzo Rosa,
• Jonathan Blackledge and
• Stefania Castelletto

Beilstein J. Nanotechnol. 2019, 10, 2128–2151, doi:10.3762/bjnano.10.207

Review of advanced sensor devices employing nanoarchitectonics concepts

• Katsuhiko Ariga,
• Tatsuyuki Makita,
• Masato Ito,
• Taizo Mori,
• Shun Watanabe and
• Jun Takeya

Beilstein J. Nanotechnol. 2019, 10, 2014–2030, doi:10.3762/bjnano.10.198

• receptors and enzymes, and macromolecular interfaces at DNA and proteins. This mechanism for the enhancement of the molecular recognition capability at interfaces is surely applicable to other molecular recognition pairs and should also lead to highly efficient molecular recognition of various aqueous

• optimize the discrimination between uracil and thymine derivatives [178][179] that cannot be discriminated by naturally occurring DNA and RNA. Although the structural difference between uracil and thymine is only one methyl group, the difference in the binding constant between them is more than 60 times. A

Porous silver-coated pNIPAM-co-AAc hydrogel nanocapsules

• William W. Bryan,
• Riddhiman Medhi,
• Maria D. Marquez,
• Supparesk Rittikulsittichai,
• Michael Tran and
• T. Randall Lee

Beilstein J. Nanotechnol. 2019, 10, 1973–1982, doi:10.3762/bjnano.10.194

• various core materials [21][22][23][24]. Recent studies involving spherical capsules have introduced a variety of materials into the core such as DNA, antibiotics, fluorescent dyes, and metal nanoparticles [25][26][27][28][29][30]. These types of particles show great promise for applications such as drug

Synthesis and potent cytotoxic activity of a novel diosgenin derivative and its phytosomes against lung cancer cells

• Liang Xu,
• Dekang Xu,
• Ziying Li,
• Yu Gao and
• Haijun Chen

Beilstein J. Nanotechnol. 2019, 10, 1933–1942, doi:10.3762/bjnano.10.189

• anticancer formulation for lung cancer. Experimental Materials 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), DNA-free RNaseA, and propidium iodide (PI) were purchased from Sigma-Aldrich (St Louis, USA). Di was obtained from Energy Chemical (Shanghai, China). RPMI 1640 medium and trypsin

Toxicity and safety study of silver and gold nanoparticles functionalized with cysteine and glutathione

• Barbara Pem,
• Igor M. Pongrac,
• Lea Ulm,
• Ivan Pavičić,
• Valerije Vrček,
• Darija Domazet Jurašin,
• Marija Ljubojević,
• Adela Krivohlavek and
• Ivana Vinković Vrček

Beilstein J. Nanotechnol. 2019, 10, 1802–1817, doi:10.3762/bjnano.10.175

• , reactive oxygen species (ROS) production, apoptosis induction and DNA damage in murine fibroblast cells (L929), while ecotoxicity was tested using the aquatic model organism Daphnia magna. The toxicity of these nanoparticles was considerably lower compared to their ionic metal forms (i.e., Ag+ and Au3

• studies indicating that AgNPs negatively impact cell membranes, interfere with signaling pathways, disrupt the cell cycle, and cause mitochondrial dysfunction, oxidative stress, DNA damage and apoptosis [7][8][9]. Many reports on AgNP toxicity attribute it fully or partially to dissolved or released ionic

• toxic than their ionic counterparts, requiring 10–50 times higher doses to achieve the same toxic effect. As oxidative stress may induce damage to DNA molecules [79], which will consequently lead to apoptosis if severe enough, the DNA damage signaling pathway was evaluated by detecting the ataxia

Novel hollow titanium dioxide nanospheres with antimicrobial activity against resistant bacteria

• Carol López de Dicastillo,
• Cristian Patiño,
• María José Galotto,
• Yesseny Vásquez-Martínez,
• Claudia Torrent,
• Daniela Alburquenque,
• Alejandro Pereira and
• Juan Escrig

Beilstein J. Nanotechnol. 2019, 10, 1716–1725, doi:10.3762/bjnano.10.167

• cells through various processes, such as lipid peroxidation of cell membrane, damaging DNA and/or amino acid- and protein-based cell oxidation [50][51]. This analysis also evidenced that, although an important enhancement of CSTiO2 antimicrobial activity occurred within 60 min of UV irradiation, no

Layered double hydroxide/sepiolite hybrid nanoarchitectures for the controlled release of herbicides

• Ediana Paula Rebitski,
• Margarita Darder and
• Pilar Aranda

Beilstein J. Nanotechnol. 2019, 10, 1679–1690, doi:10.3762/bjnano.10.163

• materials, and macromolecular systems of DNA and cells [2][3][4][5]. In this context, clay-based nanoarchitectonic materials have been developed over the years, starting from classical pillared clays and porous clay heterostructures (PCH) to more innovative materials involving the assembly of different

• the above mentioned applications, in particular, for uses as host substrate in the immobilization of active species (e.g., drugs, pesticides, and DNA) for controlled-delivery applications [27][28][29]. LDH have been also used in the construction of different types of nanoarchitectonic materials. The

Chiral nanostructures self-assembled from nitrocinnamic amide amphiphiles: substituent and solvent effects

• Hejin Jiang,
• Huahua Fan,
• Yuqian Jiang,
• Li Zhang and
• Minghua Liu

Beilstein J. Nanotechnol. 2019, 10, 1608–1617, doi:10.3762/bjnano.10.156

• , Beijing 100049, China Laboratory for Nanosystem and Hierarchical Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190, China 10.3762/bjnano.10.156 Abstract Chiral nanostructures, such as α-helical proteins and double helix DNA, are widely

• of living matter and perhaps even a requirement for life [1][2]. For example, the α-helix of peptides, the DNA double helix, and the triple helix of collagens are vital biological structures. It is an important issue to understand how such chiral nanostructures can be formed from simple small

Materials nanoarchitectonics at two-dimensional liquid interfaces

• Katsuhiko Ariga,
• Michio Matsumoto,
• Taizo Mori and
• Lok Kumar Shrestha

Beilstein J. Nanotechnol. 2019, 10, 1559–1587, doi:10.3762/bjnano.10.153

• , various materials such as molecular machines, molecular receptors, block-copolymer, DNA origami, nanocarbon, phages, and stem cells were assembled at liquid interfaces by using various useful techniques. This review overviews techniques such as conventional Langmuir–Blodgett method, vortex Langmuir

• sophisticated strategy to realize chemotherapy targeting at cancer cells using the controlled assembly and disassembly of layer-by-layer hybrid structures made of two dimensional MoS2 nanosheets with DNA [87]. The preparation of functional low-dimensional materials requires preservation of nanoscale features in

• reported by Yan, Zhao and co-workers [128]. Other one-dimensional functional structures such as porphyrin-functionalized DNA (by Stulz [129]), DNA-based complex structures for ultrasensitive mercury detection (by Govindaraju and co-workers [130]), self-assembled chiral twisted and helical nanofibers (by

The systemic effect of PEG-nGO-induced oxidative stress in vivo in a rodent model

• Qura Tul Ain,
• Samina Hyder Haq,
• Abeer Alshammari,
• Moudhi Abdullah Al-Mutlaq and
• Muhammad Naeem Anjum

Beilstein J. Nanotechnol. 2019, 10, 901–911, doi:10.3762/bjnano.10.91

• generating free radicals [49]. These free radicals can attack the surrounding biological molecules such as proteins, lipids and even DNA, which could result in a loss or damage of their biological function. In the body of mammals, there are antioxidants to counter these free radicals and protect tissues from

Features and advantages of flexible silicon nanowires for SERS applications

• Hrvoje Gebavi,
• Vlatko Gašparić,
• Dubravko Risović,
• Nikola Baran,
• Paweł Henryk Albrycht and
• Mile Ivanda

Beilstein J. Nanotechnol. 2019, 10, 725–734, doi:10.3762/bjnano.10.72

• economical for synthesis, but suffer from the lack of reproducibility due to unpredictable aggregation. Thus, researchers have implemented various ways to control the aggregation, such as bifunctional linker molecules, stimuli-responsive polymers, short single-stranded DNA chains or aptamers. Optimized solid

Biocompatible organic–inorganic hybrid materials based on nucleobases and titanium developed by molecular layer deposition

• Leva Momtazi,
• Henrik H. Sønsteby and
• Ola Nilsen

Beilstein J. Nanotechnol. 2019, 10, 399–411, doi:10.3762/bjnano.10.39

• and therapy, and probes for biosensing [1]. Nucleobases are constituents of DNA and RNA and can interact with different metals to form several molecular assemblies [2][3]. In the 1960s, a powerful antitumor agent named cisplatin (cis-[Pt(NH3)2Cl2]) was discovered by Rosenberg [4]. Later it was

• realized that the mode of action of this drug is due to coordinative bond formation of the metal ion with nucleobase donor atoms in DNA. This led to an upsurge in interest in organometallic compounds containing nucleobases [5][6][7]. For instance, attempts have been made to bind adenine to dirhodium

Targeting strategies for improving the efficacy of nanomedicine in oncology

• Gonzalo Villaverde and
• Alejandro Baeza

Beilstein J. Nanotechnol. 2019, 10, 168–181, doi:10.3762/bjnano.10.16

• mitochondria membrane by electrostatic interactions. The nucleus contains practically all the genetic information (except for the mitochondrial DNA) and is of paramount importance for the correct function of the entire cell. Targeting nuclei has received huge attention regarding the delivery of cytotoxic

• species that act on DNA or the direct delivery of genes to their place of action. Viruses are one of the inspiration sources for strategies to reach the inner nuclear space. They contain on their membrane small peptide sequences with nuclear translocation capacity such as the KKKRKV peptide in simian

• subcellular localizations [42][82]. There are many cytotoxic drugs, such as doxorubicin, that induce cell apoptosis through intercalation with nuclear DNA. Further, gene silencing therapies based on an effective delivery of short hairpin RNA (shRNA) bearing genes for small interfering RNA (siRNA) need nuclear

New micro/mesoporous nanocomposite material from low-cost sources for the efficient removal of aromatic and pathogenic pollutants from water

• Emmanuel I. Unuabonah,
• Robert Nöske,
• Jens Weber,
• Christina Günter and
• Andreas Taubert

Beilstein J. Nanotechnol. 2019, 10, 119–131, doi:10.3762/bjnano.10.11

• deactivate bacteria by damaging its cell membrane and DNA [50]. It is known that electrostatic adsorbent–adsorbate interactions do occur in solution at pH values either above or below the pHpzc of the adsorbent [51]. Based on the latter, it is believed that the composite adsorbent material in this study does

Characterization and influence of hydroxyapatite nanopowders on living cells

• Przemyslaw Oberbek,
• Tomasz Bolek,
• Adrian Chlanda,
• Seishiro Hirano,
• Sylwia Kusnieruk,
• Julia Rogowska-Tylman,
• Ganna Nechyporenko,
• Viktor Zinchenko,
• Wojciech Swieszkowski and
• Tomasz Puzyn

Beilstein J. Nanotechnol. 2018, 9, 3079–3094, doi:10.3762/bjnano.9.286

• surface areas ranging from 66.3 m2/g to 163.9 m2/g, indicating a small size of the particles confirmed by bright-field TEM imaging (see AS values in Table 2). Since the particle sizes in the range of 1–10 nm are comparable to the size of DNA, they may cause toxic and mutagenic effects [49][50]. Therefore

• treatment. Basing on same logic, NOAA of highly crystalline HApSA should also cause a similar retention effect, but F201 and F202 also had some content of very small particles the size of which is comparable to the size of DNA (ca. 10 nm). When their nanoobjects start to dissolve inside the cells, these

Nanostructured liquid crystal systems and applications

• Alexei R. Khokhlov and
• Alexander V. Emelyanenko

Beilstein J. Nanotechnol. 2018, 9, 2644–2645, doi:10.3762/bjnano.9.245

• well as in food production. The molecules of the human body (e.g., DNA, proteins) can also form liquid crystal phases. Many applications of liquid crystals require the manipulation of structures on the nanometer scale. For example, these highly sensitive materials are capable of changing their

Cytotoxicity of doxorubicin-conjugated poly[N-(2-hydroxypropyl)methacrylamide]-modified γ-Fe₂O₃ nanoparticles towards human tumor cells

• Zdeněk Plichta,
• Yulia Kozak,
• Rostyslav Panchuk,
• Viktoria Sokolova,
• Matthias Epple,
• Lesya Kobylinska,
• Pavla Jendelová and
• Daniel Horák

Beilstein J. Nanotechnol. 2018, 9, 2533–2545, doi:10.3762/bjnano.9.236

• doxorubicin (Dox), which is considered as one of the most potent FDA-approved antitumor drugs [1]. Dox realizes its therapeutic effect via the inhibition of DNA topoisomerase II and the generation of free radicals, leading to cell membrane damage, inhibition of macromolecule production, and ultimately

• , however, still under study. It can be concluded that the newly designed γ-Fe2O3@P(HPMA-MMAA)-Dox nanoparticles are highly promising for the delivery of cancer medications into tumors, offering enhanced cell adhesion, increased apoptosis, minimal immunogenicity, lipid peroxidation, DNA damage, and reduced

Non-agglomerated silicon–organic nanoparticles and their nanocomplexes with oligonucleotides: synthesis and properties

• Asya S. Levina,
• Marina N. Repkova,
• Nadezhda V. Shikina,
• Zinfer R. Ismagilov,
• Svetlana A. Yashnik,
• Dmitrii V. Semenov,
• Yulia I. Savinovskaya,
• Natalia A. Mazurkova,
• Inna A. Pyshnaya and
• Valentina F. Zarytova

Beilstein J. Nanotechnol. 2018, 9, 2516–2525, doi:10.3762/bjnano.9.234

• practical medicine. Despite many efforts in this field, this problem cannot be considered as completely solved. А promising approach is the use of various nanoparticles as delivery vehicles. We have previously developed methods for immobilizing DNA fragments onto titanium dioxide nanoparticles with the

• formation of TiO2·PL–DNA nanocomposites [1][2]. Silica nanoparticles can also be used as vehicles to deliver nucleic acid fragments into cells [3][4]. SiO2 nanoparticles bearing amino groups on the surface were shown to bind plasmid DNA, allowing the nanoparticles to penetration into cells, and even nuclei

• , and to protect DNA against intracellular nucleases [5][6]. The prospect of using SiO2 nanoparticles as nonviral nanovectors to deliver plasmid DNA and their lower toxicity compared to the widely used transfection agent lipofectamine was shown in previous work [6]. It was demonstrated that SiO2