Fatigue crack growth characteristics of Fe and Ni under cyclic loading using a quasi-continuum method

• Ren-Zheng Qiu,
• Yi-Chen Lin and
• Te-Hua Fang

Beilstein J. Nanotechnol. 2018, 9, 1000–1014, doi:10.3762/bjnano.9.93

• , strong materials. Considerable attention has been focused on the investigation of the fatigue crack growth behavior in single crystals under cyclic loading using molecular dynamics (MD), which is an effective tool for analyzing the mechanical deformation and mechanical properties of materials at the

Dynamics and fragmentation mechanism of (C₅H₄CH₃)Pt(CH₃)₃ on SiO₂ surfaces

• Kaliappan Muthukumar,
• Harald O. Jeschke and
• Roser Valentí

Beilstein J. Nanotechnol. 2018, 9, 711–720, doi:10.3762/bjnano.9.66

• beam pretreated surfaces. Hence, in order to extend the knowledge on the adsorption and to address the open questions in the deposition process, in this study we use DFT and finite temperature DFT-based molecular dynamics (MD) simulations and investigate the adsorption behavior of (C5H4CH3)Pt(CH3)3 on

Interface conditions of roughness-induced superoleophilic and superoleophobic surfaces immersed in hexadecane and ethylene glycol

• Yifan Li,
• Yunlu Pan and
• Xuezeng Zhao

Beilstein J. Nanotechnol. 2017, 8, 2504–2514, doi:10.3762/bjnano.8.250

• of roughness by using AFM. Results show that the slip length enhanced with larger RMS roughness, as the increasing roughness could magnify the intrinsic wetting properties of surface. In addition, the published studies based on LB simulation and molecular dynamics (MD) also show that roughness could

Molecular dynamics simulations of nanoindentation and scratch in Cu grain boundaries

• Shih-Wei Liang,
• Ren-Zheng Qiu and
• Te-Hua Fang

Beilstein J. Nanotechnol. 2017, 8, 2283–2295, doi:10.3762/bjnano.8.228

• scratch conditions were studied by molecular dynamics (MD) simulations. The type of grain boundary is the main factor in the control of the substrate atoms with respect to the size of dislocations since the existence of the grain boundary itself restricts the movement associated with dislocations. In this

• ][18][19][20][21]. Molecular dynamics (MD) simulation is an effective tool for studying material behavior and system design at the nanometer scale while avoiding experimental noise and turbulence issues. Landman et al. [7] studied the interactional properties (i.e., the characteristics of deformation

Velocity dependence of sliding friction on a crystalline surface

• Christian Apostoli,
• Giovanni Giusti,
• Jacopo Ciccoianni,
• Gabriele Riva,
• Rosario Capozza,
• Rosalie Laure Woulaché,
• Andrea Vanossi,
• Emanuele Panizon and
• Nicola Manini

Beilstein J. Nanotechnol. 2017, 8, 2186–2199, doi:10.3762/bjnano.8.218

• of the atomic force microscope (AFM) and its friction force microscope (FFM) variant [6][7][8], as well as the extensive usage of atomistic molecular dynamics (MD) simulations and modeling made possible by the vastly increased computing power availability [9][10][11][12][13][14][15][16]. Despite this

Calculating free energies of organic molecules on insulating substrates

• Julian Gaberle,
• David Z. Gao and
• Alexander L. Shluger

Beilstein J. Nanotechnol. 2017, 8, 667–674, doi:10.3762/bjnano.8.71

• molecular dynamics (MD) simulations have been developed for many years and the most popular ones are summarised in [31]. Instead of calculating free energies directly, they can be expressed as averages over ensembles of atomic configurations. Such ensembles can be obtained from Monte Carlo (MC) or MD

Numerical investigation of depth profiling capabilities of helium and neon ions in ion microscopy

• Patrick Philipp,
• Lukasz Rzeznik and
• Tom Wirtz

Beilstein J. Nanotechnol. 2016, 7, 1749–1760, doi:10.3762/bjnano.7.168

• dynamics (MD) simulations, possible changes in the sample upon irradiation due to chemical reactions, as they are included in reactive force fields [27][28][29], are not contained in the model, but SD_TRIM_SP has the advantage to allow for the simulation of high fluences up in the 1018 ions/cm2 range, i.e

• chemical species present in the different layers, the influence of atomic mass on atomic mixing and the sputtering processes can be studied for different primary ion species. For this reason, layers of polytetrafluoroethylene (PTFE), PS or PMMA have been embedded into PE layers. Compared to molecular

Three-gradient regular solution model for simple liquids wetting complex surface topologies

• Sabine Akerboom,
• Marleen Kamperman and
• Frans A. M. Leermakers

Beilstein J. Nanotechnol. 2016, 7, 1377–1396, doi:10.3762/bjnano.7.129

• methods [29], molecular dynamics (MD) [23][30][31][32], and mesoscopic lattice-Boltzmann (LB) models [33][34][35][36][37] are a viable option for this problem, but are challenging because wetting on complex structures involves multiple length scales [38] and the time needed to converge to a solution can

Experimental and simulation-based investigation of He, Ne and Ar irradiation of polymers for ion microscopy

• Lukasz Rzeznik,
• Yves Fleming,
• Tom Wirtz and
• Patrick Philipp

Beilstein J. Nanotechnol. 2016, 7, 1113–1128, doi:10.3762/bjnano.7.104

• + bombardment influences roughness formation and preferential sputtering for polymer samples and how they compare to Ar+ primary ions used in classical SIMS by combining experimental techniques with Molecular Dynamics (MD) simulations and SD_TRIM_SP modelling. The results show that diffusion coefficients for He

• of the sample under ion bombardment is obtained. As an example, one may cite molecular dynamics (MD) simulations of Ar+ irradiation on a benzene overlayer on a Ni(001) surface [17] and on an ethylidyne (C2H3) overlayer on a Pt(111) substrate [18]. Ion bombardment on polymers was reported first for 1

• average roughness measurement is based on the roughness from 6 different linescans covering different areas of the scanned image. Numerical methods Diffusion of rare gas atoms To study the mobility of noble gas atoms in a polymer matrix molecular dynamics (MD) simulations have been used to track the time

Coupled molecular and cantilever dynamics model for frequency-modulated atomic force microscopy

• Michael Klocke and
• Dietrich E. Wolf

Beilstein J. Nanotechnol. 2016, 7, 708–720, doi:10.3762/bjnano.7.63

• these models use ab initio molecular dynamics or DFT methods [2][18][19], which represent the material properties most reliably. Their computational demand is very high, though, so that the force between tip and sample surface is usually calculated for a quasistatic tip. Molecular dynamics (MD

Plasticity-mediated collapse and recrystallization in hollow copper nanowires: a molecular dynamics simulation

• Amlan Dutta,
• Arup Kumar Raychaudhuri and
• Tanusri Saha-Dasgupta

Beilstein J. Nanotechnol. 2016, 7, 228–235, doi:10.3762/bjnano.7.21

• still needs to be probed through rigorous atomistic simulation without relying on the preconceived notion of diffusive transport of vacancies. In this article, we study the above-mentioned issue by performing molecular dynamics (MD) simulation of ultra-thin single crystalline copper nanowire (NW) with

Electroviscous effect on fluid drag in a microchannel with large zeta potential

• Dalei Jing and
• Bharat Bhushan

Beilstein J. Nanotechnol. 2015, 6, 2207–2216, doi:10.3762/bjnano.6.226

• molecular dynamics (MD) simulations. They found that a large surface charge density results in a smaller slip. Jing and Bhushan [13] experimentally studied the coupling relationship between the surface charge and the slip of a smooth and hydrophobic octadecyltrichlorosilane (OTS) sample immersed in

Simulation of thermal stress and buckling instability in Si/Ge and Ge/Si core/shell nanowires

• Suvankar Das,
• Amitava Moitra,
• Mishreyee Bhattacharya and
• Amlan Dutta

Beilstein J. Nanotechnol. 2015, 6, 1970–1977, doi:10.3762/bjnano.6.201

• stress for elastic instability of the nanowire, which furnishes the safe limits of designing and operating parameters of these nanowire devices. Results and Discussion Simulation scheme The present study involves a series of molecular statics (MS) and molecular dynamics (MD) simulations of core/shell

Multiscale modeling of lithium ion batteries: thermal aspects

• Arnulf Latz and
• Jochen Zausch

Beilstein J. Nanotechnol. 2015, 6, 987–1007, doi:10.3762/bjnano.6.102

• energy barriers caused by the local environment of the Li ions. They may depend in solids on vacancy distributions as well as on the local lithium-ion concentration itself [9][11][12][13]. The diffusion coefficients for liquid electrolytes might more easily obtained from molecular dynamics (MD

Nanometer-resolved mechanical properties around GaN crystal surface steps

• Jörg Buchwald,
• Marina Sarmanova,
• Bernd Rauschenbach and
• Stefan G. Mayr

Beilstein J. Nanotechnol. 2014, 5, 2164–2170, doi:10.3762/bjnano.5.225

• more advanced surface features, including steps, are unclear at this point. The present work addresses the mechanical behavior around a gallium nitride (GaN) step employing a combination of classical molecular dynamics (MD) simulations with a finite element (FEM) approach and CR-AFM experiments. GaN is

Sequence-dependent electrical response of ssDNA-decorated carbon nanotube, field-effect transistors to dopamine

• Hari Krishna Salila Vijayalal Mohan,
• Jianing An and
• Lianxi Zheng

Beilstein J. Nanotechnol. 2014, 5, 2113–2121, doi:10.3762/bjnano.5.220

• devices, suggesting carrier scattering by molecular coating [16]. There were no major changes observed for gmp or H. According to molecular dynamics (MD) simulations [28][29], ssDNA interacts with the SWCNT sidewall through its DNA bases [30][31], with a significant number of the bases being desorbed [32

On the structure of grain/interphase boundaries and interfaces

• K. Anantha Padmanabhan and
• Herbert Gleiter

Beilstein J. Nanotechnol. 2014, 5, 1603–1615, doi:10.3762/bjnano.5.172

• weaker than the grain interior because of the larger interatomic distances.) Therefore, for this class of materials molecular dynamics (MD) simulations may be used to determine the structure of grain/interphase boundaries/interfaces. (As these involve the use of empirical potentials, their relevance has

Double layer effects in a model of proton discharge on charged electrodes

• Johannes Wiebe and
• Eckhard Spohr

Beilstein J. Nanotechnol. 2014, 5, 973–982, doi:10.3762/bjnano.5.111

• proton transfer and discharge at charged electrodes on the basis of reactive force field molecular dynamics (MD), which allows us at present to incorporate for a given model the first four of these requirements into a molecular model. As a starting system we chose a simple platinum (111) surface, because

Resonance of graphene nanoribbons doped with nitrogen and boron: a molecular dynamics study

• Ye Wei,
• Haifei Zhan,
• Kang Xia,
• Wendong Zhang,
• Shengbo Sang and
• Yuantong Gu

Beilstein J. Nanotechnol. 2014, 5, 717–725, doi:10.3762/bjnano.5.84

• different dopants. The study will be carried out by large-scale molecular dynamics (MD) simulations. Both perfect and defective (with initial vacancies) GNRs doped with boron and nitrogen will be considered. Numerical implementation Based on large-scale molecular dynamics (MD) simulations, a series of

Tensile properties of a boron/nitrogen-doped carbon nanotube–graphene hybrid structure

• Kang Xia,
• Haifei Zhan,
• Ye Wei and
• Yuantong Gu

Beilstein J. Nanotechnol. 2014, 5, 329–336, doi:10.3762/bjnano.5.37

• majority of the current works that are conducted on graphene variations are focusing on the electrical and chemical properties. However, to facilitate the applications of nanomaterials, a comprehensive understanding of their mechanical properties/performance is crucial. By using molecular dynamics (MD

Deformation-induced grain growth and twinning in nanocrystalline palladium thin films

• Aaron Kobler,
• Jochen Lohmiller,
• Jonathan Schäfer,
• Michael Kerber,
• Anna Castrup,
• Ankush Kashiwar,
• Patric A. Gruber,
• Karsten Albe,
• Horst Hahn and
• Christian Kübel

Beilstein J. Nanotechnol. 2013, 4, 554–566, doi:10.3762/bjnano.4.64

• density was found during straining. On the other hand, starting from a higher twin density, the twins were depleted with increasing strain. The findings from ACOM-TEM were confirmed by results from molecular dynamics (MD) simulations and from conventional and in-situ synchrotron X-ray diffraction (CXRD

• synchrotron X-ray diffraction (SXRD) on equivalent samples. Furthermore, the experimental results for the twin density evolution are qualitatively supported by molecular dynamics (MD) simulations. Results Microstructural characterization of the as deposited Pd films The sputtering parameters were chosen to

Nanoglasses: a new kind of noncrystalline materials

• Herbert Gleiter

Beilstein J. Nanotechnol. 2013, 4, 517–533, doi:10.3762/bjnano.4.61

• nanoglass produced by introducing a high density of shear bands, the results of recent studies by molecular dynamics (MD) [12][13] and Mössbauer spectroscopy of a ball-milled melt-quenched Fe90Sc10 glassy ribbon and a Fe90Sc10 nanoglass suggest that the atomic structure of both kinds of nanoglass differ

• NRVS data do not depend on porosity. Structural stability Due to the important role of the structural stability of nanoglasses, this issue is addressed in Figure 14 on application of molecular dynamics (MD). Although already discussed in [28], the essential results obtained so far are briefly repeated

• here in order to provide a complete picture of our present understanding. Figure 14a–g compares the results of a molecular dynamics (MD) simulation of the microstructural evolution of a three-dimensional nanoglass formed by sintering glassy spheres of Ge [27]. The sintering process occurred under a

Molecular dynamics simulations of mechanical failure in polymorphic arrangements of amyloid fibrils containing structural defects

• Hlengisizwe Ndlovu,
• Alison E. Ashcroft,
• Sheena E. Radford and
• Sarah A. Harris

Beilstein J. Nanotechnol. 2013, 4, 429–440, doi:10.3762/bjnano.4.50

• fibrils formed from 10-residue fragments of the amylin protein (sequence SNNFGAILSS) as structurally determined by ssNMR [24] are simulated in full atomistic detail using molecular dynamics (MD). These models are classified according to symmetry packing classes, after the Eisenberg steric zipper

Plasticity of Cu nanoparticles: Dislocation-dendrite-induced strain hardening and a limit for displacive plasticity

• Antti Tolvanen and
• Karsten Albe

Beilstein J. Nanotechnol. 2013, 4, 173–179, doi:10.3762/bjnano.4.17

• further elucidates how the nanoscale processes differ from the familiar macroscopic counterparts and motivates more studies to understand the possible limits of displacive plasticity. Methods Molecular dynamics (MD) simulations were performed by using a modified version of the LAMMPS [14] simulation

Graphite, graphene on SiC, and graphene nanoribbons: Calculated images with a numerical FM-AFM

• Fabien Castanié,
• Laurent Nony,
• Sébastien Gauthier and
• Xavier Bouju

Beilstein J. Nanotechnol. 2012, 3, 301–311, doi:10.3762/bjnano.3.34

• and a constant-height mode image, whatever the interaction regime is. Moreover, a molecular dynamics (MD) module is added by linking the n-AFM to the MD code DL_POLY [85]. This MD module can be implemented when it is necessary to take temperature conditions and/or deformations of the tip and the