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Search for "molecular dynamics (MD)" in Full Text gives 54 result(s) in Beilstein Journal of Nanotechnology.

Direct monitoring of opto-mechanical switching of self-assembled monolayer films containing the azobenzene group

  • Einat Tirosh,
  • Enrico Benassi,
  • Silvio Pipolo,
  • Marcel Mayor,
  • Michal Valášek,
  • Veronica Frydman,
  • Stefano Corni and
  • Sidney R. Cohen

Beilstein J. Nanotechnol. 2011, 2, 834–844, doi:10.3762/bjnano.2.93

Graphical Abstract
  • geometry. The structure of the SAM was built to reproduce the experimentally observed periodicity [10] (Figure 6) and the gold surface is described, in this first model, only implicitly by fixing the sulfur atom positions. Molecular dynamics (MD) simulations within the canonical ensemble at T = 300 K were
  • dynamics (MD) simulations of the SAM. In the QM approach, the stiffness of the SAM is first related to a molecular quantity, the weighted molecular force constant , through a simple model. Then, is obtained by rigorous ab initio calculations (details in Experimental section). The molecular
  • The investigation of the relative stiffness of the azobenzene SAM at the molecular level was also approached by computational modeling. The problem was modeled within two different schemes, one based on a quantum mechanical (QM) description of the single molecule, and the other on classical molecular
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Published 20 Dec 2011

Current-induced dynamics in carbon atomic contacts

  • Jing-Tao Lü,
  • Tue Gunst,
  • Per Hedegård and
  • Mads Brandbyge

Beilstein J. Nanotechnol. 2011, 2, 814–823, doi:10.3762/bjnano.2.90

Graphical Abstract
  • computer simulation techniques, such as molecular dynamics (MD), preferably without adjustable parameters, to study in detail the complex current-driven atomic processes. To this end, we recently developed an approach based on the semiclassical Langevin equation, which may form the basis of MD. In this
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Adds. & Corrs.
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Published 16 Dec 2011

Self-organizing bioinspired oligothiophene–oligopeptide hybrids

  • Alexey K. Shaytan,
  • Eva-Kathrin Schillinger,
  • Elena Mena-Osteritz,
  • Sylvia Schmid,
  • Pavel G. Khalatur,
  • Peter Bäuerle and
  • Alexei R. Khokhlov

Beilstein J. Nanotechnol. 2011, 2, 525–544, doi:10.3762/bjnano.2.57

Graphical Abstract
  • and the fibrillar morphology. When 3-D atomistic structures of microcrystals or oligomeric aggregates are available they may be used to construct computational models of the fibrillar aggregates, and through the application of atomistic molecular dynamics (MD) simulations the structural data can be
  • individual molecules in their respective states, kinked and stretched, differs profoundly. Theoretical approaches based on quantum chemistry calculations and atomistic molecular dynamics (MD) simulations were attempted in order to reveal the possible intermolecular arrangements, their characteristic features
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Review
Published 05 Sep 2011

Structure, morphology, and magnetic properties of Fe nanoparticles deposited onto single-crystalline surfaces

  • Armin Kleibert,
  • Wolfgang Rosellen,
  • Mathias Getzlaff and
  • Joachim Bansmann

Beilstein J. Nanotechnol. 2011, 2, 47–56, doi:10.3762/bjnano.2.6

Graphical Abstract
  • far from thermal equilibrium forming due to the complex landing kinetics of the smaller particles which are connected with the spontaneous reorientation process. Recent molecular-dynamics (MD) simulations give microscopic insight into the processes in nanoparticle deposition experiments [65]. In
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Published 21 Jan 2011
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