Metal-mediated base pairs in parallel-stranded DNA

Scholarly Works

• Zeng, G.-C.; Wang, Y.-L. Development and Validation of a Thermally Stable Aptamer-Based BioFET Sensor for Sensitive Mercury Ion Detection. In 2025 23rd International Conference on Solid-State Sensors, Actuators and Microsystems (Transducers), IEEE, 2025; pp 2036–2039. doi:10.1109/transducers61432.2025.11110738
• Bardehle, C.; Hebenbrock, M.; Hepp, A.; Müller, J. Lumos: A β‐Diketone‐Derived Artificial Nucleobase Forming Inter‐Strand Complexes in DNA that Promote Lanthanoid Ion Luminescence. ChemistryEurope 2025, 3. doi:10.1002/ceur.202400116
• Zeng, G.-C.; Huang, H.-W.; Lin, C.-K.; Chen, J.-C.; Dong, G.-C.; Hung, S.-C.; Wang, Y.-L. Design and demonstration of a temperature-resistant aptamer structure for highly sensitive mercury ion detection with BioFETs. Talanta 2024, 283, 127138. doi:10.1016/j.talanta.2024.127138
• Zeng, G.-C.; Huang, H.-W.; Lin, C.-K.; Chen, J.-C.; Dong, G.-C.; Hung, S.-C.; Wang, Y.-L. Design and Demonstration of a Temperature-Resistant Aptamer Structure for Highly Sensitive Mercury Ion Detection with Biofets. Elsevier BV 2024. doi:10.2139/ssrn.4904918
• Peng, S.; Chang, Y.; Zeng, X.; Lai, R.; Yang, M.; Wang, D.; Zhou, X.; Shao, Y. Selectivity of natural isoquinoline alkaloid assembler in programming poly(dA) into parallel duplex by polyvalent synergy. Analytica chimica acta 2023, 1241, 340777. doi:10.1016/j.aca.2022.340777
• Hebenbrock, M.; Müller, J. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering - Metal-mediated base pairs in nucleic acid duplexes. Comprehensive Inorganic Chemistry III; Elsevier, 2023; pp 664–713. doi:10.1016/b978-0-12-823144-9.00033-9
• Atsugi, T.; Ono, A.; Tasaka, M.; Eguchi, N.; Fujiwara, S.; Kondo, J. A Novel AgI -DNA Rod Comprising a One-Dimensional Array of 11 Silver Ions within a Double Helical Structure. Angewandte Chemie (International ed. in English) 2022, 61, e202204798. doi:10.1002/anie.202204798
• Atsugi, T.; Ono, A.; Tasaka, M.; Eguchi, N.; Fujiwara, S.; Kondo, J. A Novel AgI‐DNA Rod Comprising a One‐Dimensional Array of 11 Silver Ions within a Double Helical Structure. Angewandte Chemie 2022, 134. doi:10.1002/ange.202204798
• Escher, D.; Müller, J. Silver(I)-mediated hetero base pairs of 6-pyrazolylpurine and its deaza derivatives. Zeitschrift für anorganische und allgemeine Chemie 2021, 647, 513–518. doi:10.1002/zaac.202000481
• Schönrath, I.; Tsvetkov, V. B.; Barceló-Oliver, M.; Hebenbrock, M.; Zatsepin, T. S.; Aralov, A. V.; Müller, J. Silver(I)-mediated base pairing in DNA involving the artificial nucleobase 7,8-dihydro-8-oxo-1,N6-ethenoadenine. Journal of inorganic biochemistry 2021, 219, 111369. doi:10.1016/j.jinorgbio.2021.111369
• Bachmann, J.; Schönrath, I.; Müller, J.; Doltsinis, N. L. Dynamic Structure and Stability of DNA Duplexes Bearing a Dinuclear Hg(II)-Mediated Base Pair. Molecules (Basel, Switzerland) 2020, 25, 4942. doi:10.3390/molecules25214942
• Kohl, F. R.; Zhang, Y.; Charnay, A. P.; Martínez-Fernández, L.; Kohler, B. Ultrafast excited state dynamics of silver ion-mediated cytosine-cytosine base pairs in metallo-DNA. The Journal of chemical physics 2020, 153, 105104. doi:10.1063/5.0020463
• Üngördü, A. The performance of Cu-mediated metal-DNA parts for nanowires: DFT and NEGF-DFT studies. Materials Today Communications 2020, 24, 101036. doi:10.1016/j.mtcomm.2020.101036
• Kliuev, P. N.; Sokolov, P. A.; Ramazanov, R. R. QM/MM-MD dissociation of Ag+ and H+ mediated cytosine pairs: Monomers and dimers. Journal of Organometallic Chemistry 2020, 919, 121333. doi:10.1016/j.jorganchem.2020.121333
• Jash, B.; Müller, J. Stable Hg(II)-mediated base pairs with a phenanthroline-derived nucleobase surrogate in antiparallel-stranded DNA. Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2020, 25, 647–654. doi:10.1007/s00775-020-01788-x
• Šebesta, F.; Šebera, J.; Sychrovský, V.; Tanaka, Y.; Burda, J. V. QM and QM/MM umbrella sampling MD study of the formation of Hg(II)-thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH. Journal of computational chemistry 2020, 41, 1509–1520. doi:10.1002/jcc.26194
• Blevins, M. S.; Kim, D.; Crittenden, C. M.; Hong, S.; Yeh, H.-C.; Petty, J. T.; Brodbelt, J. S. Footprints of Nanoscale DNA-Silver Cluster Chromophores via Activated-Electron Photodetachment Mass Spectrometry. ACS nano 2019, 13, 14070–14079. doi:10.1021/acsnano.9b06470
• Naskar, S.; Guha, R.; Müller, J. Metallmodifizierte Nukleinsäuren: Metallvermittelte Basenpaare, ‐tripel und ‐tetraden. Angewandte Chemie 2019, 132, 1413–1423. doi:10.1002/ange.201905913
• Naskar, S.; Guha, R.; Müller, J. Metal-Modified Nucleic Acids: Metal-Mediated Base Pairs, Triples, and Tetrads. Angewandte Chemie (International ed. in English) 2019, 59, 1397–1406. doi:10.1002/anie.201905913
• Kliuev, P. N.; Ramazanov, R. R. The mechanism of dissociation of cytosine pairs mediated by silver ions. Computer Research and Modeling 2019, 11, 685–693. doi:10.20537/2076-7633-2019-11-4-685-693

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