Fluorogenic PNA probes

Tirayut Vilaivan
Beilstein J. Org. Chem. 2018, 14, 253–281. https://doi.org/10.3762/bjoc.14.17

Cite the Following Article

Fluorogenic PNA probes
Tirayut Vilaivan
Beilstein J. Org. Chem. 2018, 14, 253–281. https://doi.org/10.3762/bjoc.14.17

How to Cite

Vilaivan, T. Beilstein J. Org. Chem. 2018, 14, 253–281. doi:10.3762/bjoc.14.17

Download Citation

Citation data can be downloaded as file using the "Download" button or used for copy/paste from the text window below.
Citation data in RIS format can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Zotero.

Presentation Graphic

Picture with graphical abstract, title and authors for social media postings and presentations.
Format: PNG Size: 711.3 KB Download

Citations to This Article

Up to 20 of the most recent references are displayed here.

Scholarly Works

  • Tepper, O.; Appella, D. H.; Zheng, H.; Dzikowski, R.; Yavin, E. A Biotinylated cpFIT-PNA Platform for the Facile Detection of Drug Resistance to Artemisinin in Plasmodium falciparum. ACS sensors 2024. doi:10.1021/acssensors.3c02553
  • Katkevics, M.; MacKay, J. A.; Rozners, E. Triplex-forming peptide nucleic acids as emerging ligands to modulate structure and function of complex RNAs. Chemical communications (Cambridge, England) 2024, 60, 1999–2008. doi:10.1039/d3cc05409h
  • Alavijeh, N. S.; Serrano, A.; Peters, M. S.; Wölper, C.; Schrader, T. Design and Synthesis of Artificial Nucleobases for Sequence-Selective DNA Recognition within the Major Groove. Chemistry, an Asian journal 2023, 18, e202300637. doi:10.1002/asia.202300637
  • Noppakuadrittidej, P.; Charlermroj, R.; Makornwattana, M.; Kaew-Amdee, S.; Waditee-Sirisattha, R.; Vilaivan, T.; Praneenararat, T.; Karoonuthaisiri, N. Development of peptide nucleic acid-based bead array technology for Bacillus cereus detection. Scientific reports 2023, 13, 12482. doi:10.1038/s41598-023-38877-1
  • Shigeto, H.; Miyata, H.; Ashizawa, T.; Iizuka, A.; Kikuchi, Y.; Hozumi, C.; Maeda, C.; Yamaguchi, K.; Yamamura, S.; Akiyama, Y. Localization of EGFR Mutations in Non-small-cell Lung Cancer Tissues Using Mutation-specific PNA-DNA Probes. Cancer genomics & proteomics 2023, 20, 375–382. doi:10.21873/cgp.20389
  • Liang, Y.; Willey, S.; Chung, Y.-C.; Lo, Y.-M.; Miao, S.; Rundell, S.; Tu, L.-C.; Bong, D. Intracellular RNA and DNA tracking by uridine-rich internal loop tagging with fluorogenic bPNA. Nature communications 2023, 14, 2987. doi:10.1038/s41467-023-38579-2
  • Murayama, K.; Yamano, Y.; Asanuma, H. Functionalization of acyclic xenonucleic acid with modified nucleobases. Polymer Journal 2023, 55, 743–752. doi:10.1038/s41428-023-00776-7
  • Chowdhury, M.; Hudson, R. H. E. Exploring Nucleobase Modifications in Oligonucleotide Analogues for Use as Environmentally Responsive Fluorophores and Beyond. Chemical record (New York, N.Y.) 2022, 23, e202200218. doi:10.1002/tcr.202200218
  • Kulkarni, P.; Datta, D.; Ganesh, K. N. Gemdimethyl Peptide Nucleic Acids (α/β/γ-gdm-PNA): E/Z-Rotamers Influence the Selectivity in the Formation of Parallel/Antiparallel gdm-PNA:DNA/RNA Duplexes. ACS omega 2022, 7, 40558–40568. doi:10.1021/acsomega.2c05873
  • Shiraj, A.; Ramabhadran, R. O.; Ganesh, K. N. Aza-PNA: Engineering E-Rotamer Selectivity Directed by Intramolecular H-bonding. Organic letters 2022, 24, 7421–7427. doi:10.1021/acs.orglett.2c02993
  • Yin, P.; Yao, G.; Zou, T.; A, N.; Na, P.; Yang, W.; Wang, H.; Tan, W. Facile preparation of N, S co-doped carbon dots and their application to a novel off-on fluorescent probe for selective determination of Hg2+. Dyes and Pigments 2022, 206, 110668. doi:10.1016/j.dyepig.2022.110668
  • Liang, Y.; Willey, S.; Chung, Y.-C.; Lo, Y.-M.; Miao, S.; Rundell, S.; Tu, L.-C.; Bong, D. Fluorogenic U-rich internal loop (FLURIL) tagging with bPNA enables intracellular RNA and DNA tracking. Cold Spring Harbor Laboratory 2022. doi:10.1101/2022.07.21.501035
  • Xiang, Z.; Li, L.; Zhao, Y. Recent progress in PNA-based biosensing technology. SCIENTIA SINICA Chimica 2022, 52, 1592–1600. doi:10.1360/ssc-2022-0070
  • Nácher-Vázquez, M.; Santos, B.; Azevedo, N. F.; Cerqueira, L. The role of Nucleic Acid Mimics (NAMs) on FISH-based techniques and applications for microbial detection. Microbiological research 2022, 262, 127086. doi:10.1016/j.micres.2022.127086
  • Suparpprom, C.; Vilaivan, T. Perspectives on conformationally constrained peptide nucleic acid (PNA): insights into the structural design, properties and applications. RSC chemical biology 2022, 3, 648–697. doi:10.1039/d2cb00017b
  • Ishii, K.; Tsuchitani, S.; Toyama, M.; Shigeto, H.; Yamamura, S.; Ohtsuki, T.; Imai, Y.; Kitamatsu, M. Fluorescence ratiometric DNA detection by peptide nucleic acid-pyrene binary probes. Bioorganic & medicinal chemistry letters 2022, 71, 128838. doi:10.1016/j.bmcl.2022.128838
  • Shigeto, H.; Kishi, T.; Ishii, K.; Ohtsuki, T.; Yamamura, S.; Kitamatsu, M. Adjusting the Structure of a Peptide Nucleic Acid (PNA) Molecular Beacon and Promoting Its DNA Detection by a Hybrid with Quencher-Modified DNA. Processes 2022, 10, 722. doi:10.3390/pr10040722
  • Bustamante-Jaramillo, L. F.; Fingal, J.; Blondot, M.-L.; Rydell, G. E.; Kann, M. Imaging of Hepatitis B Virus Nucleic Acids: Current Advances and Challenges. Viruses 2022, 14, 557. doi:10.3390/v14030557
  • Shibata, A.; Higashi, S. L.; Ikeda, M. Nucleic acid-based fluorescent sensor systems: a review. Polymer Journal 2022, 54, 751–766. doi:10.1038/s41428-022-00623-1
  • Faikhruea, K.; Choopara, I.; Somboonna, N.; Assavalapsakul, W.; Kim, B. H.; Vilaivan, T. Enhancing Peptide Nucleic Acid-Nanomaterial Interaction and Performance Improvement of Peptide Nucleic Acid-Based Nucleic Acid Detection by Using Electrostatic Effects. ACS applied bio materials 2022, 5, 789–800. doi:10.1021/acsabm.1c01177
Other Beilstein-Institut Open Science Activities