Rational design of block copolymer self-assemblies in photodynamic therapy

• Maxime Demazeau,
• Laure Gibot,
• Anne-Françoise Mingotaud,
• Patricia Vicendo,
• Clément Roux and
• Barbara Lonetti

Beilstein J. Nanotechnol. 2020, 11, 180–212, doi:10.3762/bjnano.11.15

Molecular architectonics of DNA for functional nanoarchitectures

• Debasis Ghosh,
• Lakshmi P. Datta and
• Thimmaiah Govindaraju

Beilstein J. Nanotechnol. 2020, 11, 124–140, doi:10.3762/bjnano.11.11

• ; functional DNA nanoarchitectonics; functional small molecules; molecular architectonics; nucleic acids; templated coassembly; Review Introduction The development of functional molecular systems and materials on a nanoscale through custom design and engineering of molecular organization is a highly

Internalization mechanisms of cell-penetrating peptides

• Ivana Ruseska and
• Andreas Zimmer

Beilstein J. Nanotechnol. 2020, 11, 101–123, doi:10.3762/bjnano.11.10

• Ivana Ruseska Andreas Zimmer Institute of Pharmaceutical Sciences, Department of Pharmaceutical Technology and Biopharmacy, University of Graz, 8010 Graz, Austria 10.3762/bjnano.11.10 Abstract In today’s modern era of medicine, macromolecular compounds such as proteins, peptides and nucleic acids

• “canonical” rules defining what a drug molecule should be like, has been accelerated these days. One part of this new group are proteins, peptides and nucleic acids, all developed with one thing in mind – bypassing the limitations of conventional therapeutics [3]. The novelty of these macromolecular

• compounds lies in their ability to target specific molecules and biological pathways, and thus, modulate molecular activities in a positive or negative manner [4]. The outstanding possibilities offered by the use of such molecules (proteins, peptides and nucleic acids) in the diagnostics and treatment of a

The different ways to chitosan/hyaluronic acid nanoparticles: templated vs direct complexation. Influence of particle preparation on morphology, cell uptake and silencing efficiency

• Arianna Gennari,
• Julio M. Rios de la Rosa,
• Erwin Hohn,
• Maria Pelliccia,
• Enrique Lallana,
• Roberto Donno,
• Annalisa Tirella and
• Nicola Tirelli

Beilstein J. Nanotechnol. 2019, 10, 2594–2608, doi:10.3762/bjnano.10.250

• ; the former can address a nanoparticle to cell surface receptors such as CD44, the second allows both for entrapment of nucleic acids and for an endosomolytic activity that facilitates their liberation in the cytoplasm. Here, we have systematically compared nanoparticles prepared either A) through a

• together a particle, but also to encapsulate and retain payloads such as nucleic acids (either in combination with other anionic components [9], or as the only negatively charged molecule [10]). Ionotropic gelation and polyelectrolyte complexation use anionic components of different size, In the former

• nanoparticles were prepared under sterile conditions (Cat. II cabinet) with surfaces previously treated with RNaseZap® solution (Thermo Scientific, UK) for the handling of nucleic acids. All the steps were performed under vigorous magnetic stirring (1,000 rpm) and at 25 °C in 2 mL round bottom Eppendorf tubes

Long-term stability and scale-up of noncovalently bound gold nanoparticle-siRNA suspensions

• Anna V. Epanchintseva,
• Julia E. Poletaeva,
• Dmitrii V. Pyshnyi,
• Elena I. Ryabchikova and
• Inna A. Pyshnaya

Beilstein J. Nanotechnol. 2019, 10, 2568–2578, doi:10.3762/bjnano.10.248

• nanoparticles (AuNPs) are a platform for the creation of nanoconstructions that can have a variety of functions, including the delivery of therapeutic nucleic acids. We previously designed a AuNP/small interfering RNA (siRNA) nanoconstruction consisting of siRNA noncovalently bound on the AuNP surface and

• of physicochemical characteristics and siRNA surface density for a long period. Keywords: colloidal stability; gold nanoparticles; scale-up; siRNA delivery; siRNA duplex stability; therapeutic nucleic acids; Introduction Drug delivery to cells is only one application of nanoparticles in biomedicine

• ; however, it occupies an important place in scientific research. The delivery of therapeutic nucleic acids (TNAs) is of particular importance due to their operation at the genomic level, and various nanoparticles (NPs) have been studied as carriers of TNAs (i.e., metallic, lipid, polymer, and peptide NPs

Coating of upconversion nanoparticles with silica nanoshells of 5–250 nm thickness

• Cynthia Kembuan,
• Maysoon Saleh,
• Bastian Rühle,
• Ute Resch-Genger and
• Christina Graf

Beilstein J. Nanotechnol. 2019, 10, 2410–2421, doi:10.3762/bjnano.10.231

• such as peptides, antibodies or nucleic acids for bioimaging applications or fluorescence assays. The growth of a mesoporous silica shell on a microporous silica shell can also be applied for the subsequent use of these nanomaterials for drug loading and delivery [69]. Experimental All syntheses were

Scavenging of reactive oxygen species by phenolic compound-modified maghemite nanoparticles

• Małgorzata Świętek,
• Yi-Chin Lu,
• Rafał Konefał,
• Liliana P. Ferreira,
• M. Margarida Cruz,
• Yunn-Hwa Ma and
• Daniel Horák

Beilstein J. Nanotechnol. 2019, 10, 1073–1088, doi:10.3762/bjnano.10.108

• reactions that induce irreversible fatal damage (methylation) of cellular nucleic acids and the oxidation of unsaturated fatty acids of cell membranes. Living organisms have evolved with several strategies, such as repair mechanisms and physical, enzymatic and non-enzymatic antioxidant defenses, to control

Mechanical and thermodynamic properties of Aβ₄₂, Aβ₄₀, and α-synuclein fibrils: a coarse-grained method to complement experimental studies

• Adolfo B. Poma,
• Horacio V. Guzman,
• Mai Suan Li and
• Panagiotis E. Theodorakis

Beilstein J. Nanotechnol. 2019, 10, 500–513, doi:10.3762/bjnano.10.51

• ., proteins [1], nucleic acids [2] and lipids [3]). Lipid membranes, viral capsids, and biological fibrils are common examples of large complexes that pose significant challenges for all-atom simulations. For example, the time scales of various biological processes are in the range from 10−6 to 10−3 s, and

Non-agglomerated silicon–organic nanoparticles and their nanocomplexes with oligonucleotides: synthesis and properties

• Asya S. Levina,
• Marina N. Repkova,
• Nadezhda V. Shikina,
• Zinfer R. Ismagilov,
• Svetlana A. Yashnik,
• Dmitrii V. Semenov,
• Yulia I. Savinovskaya,
• Natalia A. Mazurkova,
• Inna A. Pyshnaya and
• Valentina F. Zarytova

Beilstein J. Nanotechnol. 2018, 9, 2516–2525, doi:10.3762/bjnano.9.234

• work was supported by the grant no. 16-15-10073 from the Russian Scientific Foundation. The study of the antiviral activity of the proposed nanocomplexes was supported partially under State funded budget project (VI.62.1.3, 0309-2016-0005) “Therapeutic nucleic acids”.

Review on nanoparticles and nanostructured materials: history, sources, toxicity and regulations

• Jaison Jeevanandam,
• Ahmed Barhoum,
• Yen S. Chan,
• Alain Dufresne and
• Michael K. Danquah

Beilstein J. Nanotechnol. 2018, 9, 1050–1074, doi:10.3762/bjnano.9.98

Noble metal-modified titania with visible-light activity for the decomposition of microorganisms

• Maya Endo,
• Zhishun Wei,
• Kunlei Wang,
• Baris Karabiyik,
• Kenta Yoshiiri,
• Paulina Rokicka,
• Bunsho Ohtani,
• Agata Markowska-Szczupak and
• Ewa Kowalska

Beilstein J. Nanotechnol. 2018, 9, 829–841, doi:10.3762/bjnano.9.77

• (λ = 253.7 nm) by nucleic acids induces the damage of genetic information and inactivation. However, it should be pointed out that chlorine disinfection is often complementary used because: (i) some viruses have low sensitivity to UV irradiation (e.g., adenovirus), and (ii) the lack of residual

Optical techniques for cervical neoplasia detection

• Tatiana Novikova

Beilstein J. Nanotechnol. 2017, 8, 1844–1862, doi:10.3762/bjnano.8.186

• ) spectral regions [62]. Differences in Raman spectra of normal and dysplastic cervical tissue were observed at wavenumbers related to proteins, lipids, glycogen, nucleic acids, and the water in tissue. The multivariate statistical analysis yielded a sensitivity of 85.0% and a specificity of 81.7% using

Surface-enhanced Raman spectroscopy of cell lysates mixed with silver nanoparticles for tumor classification

• Mohamed Hassoun,
• Iwan W.Schie,
• Tatiana Tolstik,
• Sarmiza E. Stanca,
• Christoph Krafft and
• Juergen Popp

Beilstein J. Nanotechnol. 2017, 8, 1183–1190, doi:10.3762/bjnano.8.120

• bonds. It probes the molecular vibrations of all cellular biomolecules, such as nucleic acids, proteins, lipids and carbohydrates and provides chemical fingerprint spectra of cells. The throughput of spontaneous Raman spectroscopy for cell classification is limited to the range of one cell per second by

•  2d. Cellular biomolecules including nucleic acids, proteins, carbohydrates and lipids are released after disruption of the cell membranes and can interact with nanoparticles. The spectral bands obtained from SERS measurements can then be assigned to biomolecules of cell nucleus and the cytoplasm. The

• raw spectra were baseline-subtracted and normalized. Figure 3 shows the processed mean SERS spectra and the standard deviation for each of the four cell lines Capan-1, HepG2, MCF-7 and Sk-Hep1. The band at 660 cm−1 is assigned to carboxylate [25]. Spectral contributions of adenine from nucleic acids

Modeling adsorption of brominated, chlorinated and mixed bromo/chloro-dibenzo-p-dioxins on C₆₀ fullerene using Nano-QSPR

• Piotr Urbaszek,
• Agnieszka Gajewicz,
• Celina Sikorska,
• Maciej Haranczyk and
• Tomasz Puzyn

Beilstein J. Nanotechnol. 2017, 8, 752–761, doi:10.3762/bjnano.8.78

• responsive element (DRE) of the nucleic acids and synthesis of new proteins or changes in gene transcription [9]. Dioxins have the largest binding affinity to AhR proteins, which are symmetrically substituted in 2,3,7,8 positions. Chlorine or other halogen atoms in positions 2,3,7, and 8 in dioxin structures

Dispersion of single-wall carbon nanotubes with supramolecular Congo red – properties of the complexes and mechanism of the interaction

• Anna Jagusiak,
• Barbara Piekarska,
• Tomasz Pańczyk,
• Małgorzata Jemioła-Rzemińska,
• Elżbieta Bielańska,
• Barbara Stopa,
• Grzegorz Zemanek,
• Janina Rybarska,
• Irena Roterman and
• Leszek Konieczny

Beilstein J. Nanotechnol. 2017, 8, 636–648, doi:10.3762/bjnano.8.68

• ]. Functionalization also allows for the attachment of biologically active molecules – e.g., drugs, nucleic acids, antibodies or ligands for cell-surface receptors. This is especially important for targeted drug delivery systems based on CNT [13][15][18][19][20][21]. Noncovalent functionalization of CNTs is usually

Uptake of the proteins HTRA1 and HTRA2 by cells mediated by calcium phosphate nanoparticles

• Olga Rotan,
• Katharina N. Severin,
• Simon Pöpsel,
• Alexander Peetsch,
• Melisa Merdanovic,
• Michael Ehrmann and
• Matthias Epple

Beilstein J. Nanotechnol. 2017, 8, 381–393, doi:10.3762/bjnano.8.40

• ]. For instance, nucleic acids like DNA [10][11][12][13], siRNA [14][15][16][17] and µRNA [18] have been successfully introduced to perform transfection, gene silencing, prophylactic and therapeutic vaccination [19][20][21]. All kinds of synthetic molecules and biomolecules can be transported across the

Streptavidin-coated gold nanoparticles: critical role of oligonucleotides on stability and fractal aggregation

• Roberta D'Agata,
• Pasquale Palladino and
• Giuseppe Spoto

Beilstein J. Nanotechnol. 2017, 8, 1–11, doi:10.3762/bjnano.8.1

• localized SPs established when nanoparticles are few nanometers far from the flat metal surface reinforces the local electric field [9][10]. The ultrasensitive detection of nucleic acids has been recently achieved by using streptavidin (SA)-conjugated AuNPs and SPR imaging (SPRI) [11][12]. In this case, the

• innovative diagnostic approaches we believe that these results will directly impact the ability to produce more reliable and sensitive nanoparticle-based diagnostics assays which could lead to advanced applications in nanomedicine which benefit of the ultrasensitive detection of nucleic acids. In addition

A novel electrochemical nanobiosensor for the ultrasensitive and specific detection of femtomolar-level gastric cancer biomarker miRNA-106a

• Maryam Daneshpour,
• Kobra Omidfar and
• Hossein Ghanbarian

Beilstein J. Nanotechnol. 2016, 7, 2023–2036, doi:10.3762/bjnano.7.193

• a current plateau for 0.3 ng/µL. Therefore, a saturation concentration of 0.3 ng/µL of the probe and the immobilization time of 60 min were chosen for subsequent studies. A main consideration regarding biosensors based on the hybridization of nucleic acids is the hybridization time. The influence of

Intercalation and structural aspects of macroRAFT agents into MgAl layered double hydroxides

• Dessislava Kostadinova,
• Ana Cenacchi Pereira,
• Muriel Lansalot,
• Franck D’Agosto,
• Elodie Bourgeat-Lami,
• Fabrice Leroux,
• Christine Taviot-Guého,
• Sylvian Cadars and
• Vanessa Prevot

Beilstein J. Nanotechnol. 2016, 7, 2000–2012, doi:10.3762/bjnano.7.191

• matrices [5][6][7]. For instance, hybrid LDH involving amino acids, peptides, nucleosides, nucleic acids [8][9][10], biopolymers [11][12] and various drugs [13][14][15] were investigated to develop efficient systems for therapeutic applications [16][17]. Various dyes (sulfonated spyrospiran, methyl orange

False positives and false negatives measure less than 0.001% in labeling ssDNA with osmium tetroxide 2,2’-bipyridine

• Anastassia Kanavarioti

Beilstein J. Nanotechnol. 2016, 7, 1434–1446, doi:10.3762/bjnano.7.135

• extensively used to study the osmylation kinetics with nucleic acids [30][31]. The characteristic of CZE is that the reagent, OsBp, migrates early with a migration time (mt) that corresponds to neutral molecules, whereas the nucleic acid migrates late and the osmylated nucleic acid migrates in between, when

• resolution between substrate and product is feasible. More extensive osmylation leads to earlier mt values. The advantage of CZE is that typically nucleic acids share comparable mt irrespective of length and composition, which leads to the convenience of using a single method for all tested materials. The

• and long nucleic acids because the osmylation reaction appears to be confined to the actual pyrimidine ring and independent of strand length and composition. Under the current protocol B, for practically 100% osmylation of T + C, levels of unreacted C are estimated at 1/10,000 and levels of unreacted

High antiviral effect of TiO₂·PL–DNA nanocomposites targeted to conservative regions of (−)RNA and (+)RNA of influenza A virus in cell culture

• Asya S. Levina,
• Marina N. Repkova,
• Elena V. Bessudnova,
• Ekaterina I. Filippova,
• Natalia A. Mazurkova and
• Valentina F. Zarytova

Beilstein J. Nanotechnol. 2016, 7, 1166–1173, doi:10.3762/bjnano.7.108

• subtypes of influenza A virus; TiO2·PL–DNA nanocomposites; Introduction The fundamental scientific problem of life sciences, especially modern molecular biology and fundamental medicine, is the development of approaches to the directed action on the genetic material of cells. Fragments of nucleic acids

• . Influenza A viruses (IAVs) are prominent in infectious diseases of humans and animals and periodically cause epidemics and epizootics. At present, the development of new antiviral drugs based on native or chemically modified nucleic acids is under scrutiny. Researchers all over the world explore the

• nanocomposites, targeted to conservative regions of (−)RNA and (+)RNA of different IAV subtypes (H1N1, H5N1, and H3N2). Results and Discussion The choice of the most suitable regions in nucleic acids for oligonucleotide-based agents is of great importance. In order to inhibit the different subtypes of viruses

Dielectrophoresis of gold nanoparticles conjugated to DNA origami structures

• Anja Henning-Knechtel,
• Matthew Wiens,
• Mathias Lakatos,
• Andreas Heerwig,
• Frieder Ostermaier,
• Nora Haufe and
• Michael Mertig

Beilstein J. Nanotechnol. 2016, 7, 948–956, doi:10.3762/bjnano.7.87

• nanomaterials such as carbon nanotubes, proteins and nucleic acids [17][18][20][21][22][23][24][25][26][27]. Recently, it has been shown that DNA origami structures can be dielectrophoretically trapped along an electrode structure using frequencies starting from 1 MHz at an electrical field strength of about 1

Mismatch detection in DNA monolayers by atomic force microscopy and electrochemical impedance spectroscopy

• Maryse D. Nkoua Ngavouka,
• Pietro Capaldo,
• Elena Ambrosetti,
• Giacinto Scoles,
• Loredana Casalis and
• Pietro Parisse

Beilstein J. Nanotechnol. 2016, 7, 220–227, doi:10.3762/bjnano.7.20

• properties of DNA base pairing. Although the understanding of the behaviour of nucleic acids on a solid surface has made huge progress from the seminal work of Southern [1] due to the rapid development of DNA microarray and DNA microarray-based techniques [2][3], there are still open questions and

• mismatches after precise annealing steps, as the ones used in current melting-based SNPs assays [30][31]. The novelty of our assay resides in the possibility of reducing the dimensions of the spots (below 1 μm2) and to work multiplexing in small volumes. The use of locked nucleic acids or enzyme-based

3D solid supported inter-polyelectrolyte complexes obtained by the alternate deposition of poly(diallyldimethylammonium chloride) and poly(sodium 4-styrenesulfonate)

• Eduardo Guzmán,
• Armando Maestro,
• Sara Llamas,
• Jesús Álvarez-Rodríguez,
• Francisco Ortega,
• Ángel Maroto-Valiente and
• Ramón G. Rubio

Beilstein J. Nanotechnol. 2016, 7, 197–208, doi:10.3762/bjnano.7.18

• polyelectrolytes, biopolymers – such as peptides, proteins and nucleic acids – colloidal particles, carbon nanotubes, and/or microgels [8][9][10], which confers to this method an almost unlimited chemical versatility. Even though the method frequently makes use of electrostatic interactions, the multilayers can

Single pyrimidine discrimination during voltage-driven translocation of osmylated oligodeoxynucleotides via the α-hemolysin nanopore

• Yun Ding and
• Anastassia Kanavarioti

Beilstein J. Nanotechnol. 2016, 7, 91–101, doi:10.3762/bjnano.7.11

• produces a constant ion flux through the pore. Nucleic acids added to one compartment traverse the pore, and modulate the current in a sequence-dependent manner. While translocation is faster than detection, the α-hemolysin nanopore (α-HL) successfully senses base modifications in ssDNA immobilized within

• histogram. Experimental conditions: 10 μM DNA in 1.0 M KCl, 10 mM PBS, pH 7.4, 22 ± 1 °C. Competing interest statement Anastassia Kanavarioti is the Founder and Director of Yenos Analytical LLC, a company engaged in the development and manufacturing of osmylated nucleic acids. Acknowledgements We thank Dr