Synthesis of deep-cavity fluorous calix[4]arenes as molecular recognition scaffolds

  1. Maksim Osipov,
  2. Qianli Chu,
  3. Steven J. Geib,
  4. Dennis P. Curran and
  5. Stephen G. Weber

Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA, Fax: +1-412-624-9861; Tel: +1-412-624-8240

  1. Corresponding author email

Beilstein J. Org. Chem. 2008, 4, No. 36.
Received 01 May 2008, Accepted 01 Oct 2008, Published 20 Oct 2008


Several lower-rim perfluoroalkylated (fluorous) calix[4]arenes have been synthesized by O-alkylation of the parent calix[4]arene. The compounds are formed in the cone conformation. They are soluble in several fluorous solvents and show promise for use in sensing, selective extractions and other applications.

Keywords: calixarene; fluorous; hydrofluoroethers; organofluorine; (perfluoroalkyl)alkyl aryl ethers


Calixarenes [1] are one of the most useful types of macrocyclic scaffolds. Since first reported by Zinke and Ziegler [2], calix[4]arenes have been used for a variety of molecular recognition, nanotechnology, and supramolecular applications. These have included nanowires [3], self organized nanostructures [4] chiral supramolecular assemblies [5], as well as sensors for cations [6,7], anions [8] and neutral organic molecules [9]. The versatility of the calixarene scaffold is a result of its preorganized cavity [10], which consists of four phenolic units connected by methylene bridges. Synthetic advances over the last several decades [1] have produced methodology to append various functional groups to the aromatic rings. These groups are selected to interact with specific guest molecules [11].

Calix[4]arenes can exist in four possible conformations: cone (Figure 1), partial cone, 1,2, and 1,3 alternates [1]. Although small groups (Me, Et) on the lower rim allow for interconversion between conformers, large groups prevent interconversion [12]. Reactions that lock the conformation result in a mixture of conformers; however, methods exist to enhance the formation of a single conformer [12]. Of the four possible conformations, the cone is the most desirable for molecular recognition and sensing applications because it has the largest available surface area for host-guest interactions [10]. With appropriate functionality and conformation, the calixarene can be tailored to bind preferentially with specific target guest molecules.


Figure 1: Calix[4]arene in cone conformation.

Fluorous chemistry [13] has become an increasingly popular field as a result of the multitude of applications that it has provided across the disciplines of chemistry. Fluorocarbons are extraordinarily non-polar and are at once both hydrophobic and lipophobic [14-16]. Fluorous liquids preferentially dissolve fluorous compounds and represent a unique class of selective solvents. These solvents have recently engendered powerful methods for separations [17] that have been used in applications ranging from recyclable reagents [18] to the total synthesis of natural products [19]. Fluorous compounds are the basis for highly selective ion sensors that show promise by virtue of their low level of biofouling [20]. Recently, it was shown that simple fluorous compounds act as molecular receptors for selective extraction of organic substrates into a fluorous liquid phase via hydrogen bonding [21].

Combining the selective nature of fluorous chemistry with the extensive molecular recognition capabilities of calixarenes should generate a scaffold for selective molecular receptors, yet few reports exist that detail the synthesis and applications of fluorous calixarenes [22-26]. There are no reports of studies of solubilities of such calixarenes in fluorous solvents. The work reported herein is focused on synthesizing fluorous calixarenes that are easily functionalized for selective molecular recognition and extraction of various analytes.

Results and Discussion

The initial target was calixarene tetra-ether 3a bearing four perfluorohexyl groups insulated by propylene spacers. To begin, the tert-butyl groups were removed from commercially available 4-tert-butylcalix[4]arene 1, providing calix[4]arene [27] 2. Using NaH/DMF, conditions known to favor reaction in the cone conformation [12], 2 was alkylated with 3-(perfluorohexyl)propyl iodide to give cone conformer 3a as the dominant tetraalkylated product in 61% yield after recrystallization (Scheme 1). However, 3a did not exhibit the desired solubility properties and did not dissolve in perfluorinated solvents (Table 1). Therefore, to increase the fluorine content of the calixarene scaffold, 2 was treated with 3-(perfluorooctyl)propyl iodide to provide 3b as the dominant tetraalkylated product, which was isolated in the cone conformation in 61% yield after recrystallization. Unlike the tetra-perfluorohexyl product 3a, we were not able to get exact mass data for 3b or other tetra-perfluorooctyl products. These compounds are otherwise well characterized and structures and purities are secure (see Supporting Information File 1).


Scheme 1: Preparation of 3a and 3b.

The solubility of 3b was explored in a variety of organic and fluorous solvents (Table 1). As with many calixarenes, 3b was highly soluble in chloroform, and in fluorophilic solvents such as THF and diethyl ether.

Table 1: Solubility of 3a and 3b in fluorous solventsa.

[3a]\Solvent FC-72b FC-75b FC-77 HFE-7100 HFE-7500 F-626
1 mM + + +
2 mM + + +
5 mM + + +
10 mM + + +
[3b]\Solvent FC-72 FC-75 FC-77 HFE-7100 HFE-7500 F-626
1 mM + + + + + +
2 mM + + +
5 mM + + +
10 mM + + +

a3a and 3b were heated in solvent until a clear solution formed. This was allowed to cool to room temperature and stand. 3a and 3b were determined to be soluble at the recorded concentration if no precipitate was observed after 24 h. b3a recrystallized upon cooling overnight.

Similarly, 3b was soluble in fluorous solvents, FC-72 (perfluorohexanes), FC-75 (perfluoro-(2-perfluorobutyl)tetrahydrofuran), FC-77 (perfluorooctanes), HFE-7100 (methyl nonafluorobutyl ether), HFE-7500 (3-ethoxy-1,1,1,2,3,4,4,5,5,6,6,6-dodecafluoro-2-trifluoromethylhexane), and F-626 (1H,1H,2H,2H-perfluorooctyl 1,3-dimethylbutyl ether) at a 1mM or greater concentration [28,29]. Compound, 3b also showed solubility in CO2 at a 2 wt % concentration, 3500 psi, and room temperature due to the presence of fluorous tails [26].

To expand the versatility of this scaffold, rim functionalization was explored. Halogenated calix[4]arenes have been shown to participate in a variety of organometallic processes, particularly palladium catalyzed cross coupling reactions, including Kumada, Negishi, and Suzuki processes which can be used to append aromatic rings onto the molecule [30,31]. Therefore, 3b was treated with N-bromosuccinimide (NBS) in methyl ethyl ketone (MEK) [32] to give the bromide 4 in 87% yield. Correspondingly, 3b was treated with silver trifluoroacetate [32] in the presence of iodine providing iodide 5 in 72% yield on a 1 mmol scale (Scheme 2). Results for the iodination were scale dependent; near quantitative yields could be obtained on 0.1 mmol scale preparations, while 1 mmol scale preparations showed diminished yields due to product occlusion with the precipitation of silver iodide.


Scheme 2: Preparation of 4 and 5.

The reactivity of 5 in the Kumada cross-coupling reaction was next investigated. Treatment of 5 with PdCl2(dppf) followed by phenylmagnesium bromide provided the biaryl 6 as the only observed product in 75% yield (Scheme 3).


Scheme 3: Preparation of 6.

With simple cross coupling accomplished, coupling with a functionalized phenyl ring was investigated. Therefore, 5 was treated with an excess of Grignard 7 in the presence of PdCl2(dppf) to provide a mixture of two inseparable compounds, the target biaryl 8, and the dimer of 7, as observed by NMR spectroscopy. Without separation, the two compounds were carried on to the subsequent TBS cleavage with TBAF to provide the free tetrol 9 after column chromatography in 69% yield over two steps (Scheme 4).


Scheme 4: Preparation of 8 and 9.

The conformations of these new fluorous calixarenes are important to understand for projected applications. The cone conformation of 3b was supported by peak symmetry observed in similar examples [8,31] by 1H NMR spectroscopy. Accordingly, the derived products should also have cone conformations. Crystals of 5 were grown by slow evaporation from a solution in THF, and one of these provided the X-ray structure in Figure 2.


Figure 2: Full (top), top (bottom left)a, and side (bottom right)a views of 5; afluorous chains omitted for clarity.

Two crystallographically independent calixarene molecules made up the asymmetric unit, each molecule having a similar calix[4]arene ring and differing in the number and location of the gauche bonds in the (perfluorooctyl)propyl chains. The asymmetric unit also contained one molecule of THF. Like other reported calixarenes [33], 5 exists in a pinched cone conformation with C2v cavity symmetry in the solid state. Its cavity volume is about 81 Å3.

Although the calixarenes 35 have an inherent cavity in this conformation, the cavity volume and surface area are small, thus limiting the scope of possible host-guest interactions. Increasing the depth of the cavity by coupling 5 with aromatic rings to give 9 allows for host-guest interactions involving larger substrates. This modification increases the versatility of the scaffold and the variety of host-guest interactions that can occur in ion binding [8] and capsule formation [34]. Likewise, introduction of hydrogen bonding groups like those of 9 are crucial for achieving interactions with various substrates [35,36].

Coupling an aromatic ring onto the upper-rim of the fluorous calixarene led to an increase in fluorescence emission (as observed qualitatively on TLC). An increase in fluorescence emission was observed with 7, 8, and 9 as compared to the single aryl ring analogs, and allows for better applications of the scaffold as a sensor [8,37].


Deep-cavity functionalized fluorous calix[4]arenes that are locked in the cone conformation have been synthesized. These molecules are soluble in several fluorous solvents, and show promise as fluorescent sensors. Introducing the hydroxyl functionality onto these molecules provides a scaffold with a deep cavity and hydrogen bonding functional groups for molecular recognition interactions.

Supporting Information

Supporting Information File 1: Experimental Procedures, Characterization Data and Copies of Spectra
Format: PDF Size: 927.3 KB Download
Supporting Information File 2: Crystal structure data for 5.
Format: TXT Size: 62.6 KB Download


We are grateful to the National Institutes of Health and the National Science Foundation (CHE0615952) for funding.


  1. Gutsche, C. D. Calixarenes Revisited; Royal Society of Chemisty: Cambridge, U.K., 1998.
    Return to citation in text: [1] [2] [3]
  2. Zinke, A.; Ziegler, E. Ber. Dtsch. Chem. Ges. B 1944, 77, 264–272. doi:10.1002/cber.19440770322
    Return to citation in text: [1]
  3. Hong, B. H.; Bae, S. C.; Lee, C.-W.; Jeong, S.; Kim, K. S. Science 2001, 294, 348–351. doi:10.1126/science.1062126
    Return to citation in text: [1]
  4. Orr, G. W.; Barbour, L. J.; Atwood, J. L. Science 1999, 285, 1049–1052. doi:10.1126/science.285.5430.1049
    Return to citation in text: [1]
  5. Prins, L. J.; De Jong, F.; Timmerman, P.; Reinhoudt, D. N. Nature 2000, 408, 181–184. doi:10.1038/35041530
    Return to citation in text: [1]
  6. Casnati, A.; Barboso, S.; Rouquette, H.; Schwing-Weill, M.-J.; Arnaud-Neu, F.; Dozol, J.-F.; Ungaro, R. J. Am. Chem. Soc. 2001, 123, 12182–12190. doi:10.1021/ja016597f
    Return to citation in text: [1]
  7. Ballester, P.; Shivanyuk, A.; Far, A. R.; Rebek, J., Jr. J. Am. Chem. Soc. 2002, 124, 14014–14016. doi:10.1021/ja0282689
    Return to citation in text: [1]
  8. Sun, X. H.; Li, W.; Xia, P. F.; Luo, H.-B.; Wei, Y.; Wong, M. S.; Cheng, Y.-K.; Shuang, S. J. Org. Chem. 2007, 72, 2419–2426. doi:10.1021/jo062258z
    Return to citation in text: [1] [2] [3] [4]
  9. Smirnov, S.; Sidorov, V.; Pinkhassik, E.; Havliček, J.; Stibor, I. Supramol. Chem. 1997, 8, 187–196. doi:10.1080/10610279708034936
    Return to citation in text: [1]
  10. Steed, J. W.; Atwood, J. L. Supramolecular Chemistry; John Wiley & Sons, Inc.: New York, 2000.
    Return to citation in text: [1] [2]
  11. Arnaud-Neu, F.; Schwing-Weill, M.-J. Synth. Met. 1997, 90, 157–164. doi:10.1016/S0379-6779(98)80001-5
    Return to citation in text: [1]
  12. Iwamoto, K.; Araki, K.; Shinkai, S. J. Org. Chem. 1991, 56, 4955–4962. doi:10.1021/jo00016a027
    Return to citation in text: [1] [2] [3]
  13. Gladysz, J. A.; Curran, D. P.; Horváth, I. T., Eds. Handbook of Fluorous Chemistry; Wiley-VCH: Weinheim, 2004.
    Return to citation in text: [1]
  14. Hildebrand, J. H.; Scott, R. L. Regular Solutions; Prentice-Hall: Englewood Cliffs, N.J., 1962.
    Return to citation in text: [1]
  15. Sandford, G. Tetrahedron 2003, 59, 437–454. doi:10.1016/S0040-4020(02)01568-5
    Return to citation in text: [1]
  16. Gladysz, J. A.; Emnet, C. Fluorous Solvents and Related Media. In The Handbook of Fluorous Chemistry; Gladysz, J. A.; Curran, D. P.; Horváth, I. T., Eds.; Wiley-VCH: Weinheim, 2004; pp 11–23. doi:10.1002/3527603905.ch3
    Return to citation in text: [1]
  17. Curran, D. P. Pure Appl. Chem. 2000, 72, 1649–1653. doi:10.1351/pac200072091649
    Return to citation in text: [1]
  18. Chu, Q.; Zhang, W.; Curran, D. P. Tetrahedron Lett. 2006, 47, 9287–9290. doi:10.1016/j.tetlet.2006.10.101
    Return to citation in text: [1]
  19. Yang, F.; Newsome, J. J.; Curran, D. P. J. Am. Chem. Soc. 2006, 128, 14200–14205. doi:10.1021/ja064812s
    Return to citation in text: [1]
  20. Boswell, P. G.; Bühlmann, P. J. Am. Chem. Soc. 2005, 127, 8958–8959. doi:10.1021/ja052403a
    Return to citation in text: [1]
  21. O’Neal, K. L.; Geib, S.; Weber, S. G. Anal. Chem. 2007, 79, 3117–3125. doi:10.1021/ac062287+
    Return to citation in text: [1]
  22. Martin, O. M.; Mecozzi, S. Supramol. Chem. 2005, 17, 9–15. doi:10.1080/10610270412331328998
    Return to citation in text: [1]
  23. Martin, O. M.; Mecozzi, S. Tetrahedron 2007, 63, 5539–5547. doi:10.1016/j.tet.2007.04.030
    Return to citation in text: [1]
  24. Martin, O. M.; Yu, L.; Mecozzi, S. Chem. Commun. 2005, 4964–4966. doi:10.1039/b506781b
    Return to citation in text: [1]
  25. Buscemi, S.; Pace, A.; Piccionello, A. P.; Pappalardo, S.; Garozzo, D.; Pilati, T.; Gattuso, G.; Pappalardo, A.; Pisagatti, I.; Parisi, M. F. Tetrahedron Lett. 2006, 47, 9049–9052. doi:10.1016/j.tetlet.2006.10.092
    Return to citation in text: [1]
  26. Glennon, J. D.; Hutchinson, S.; Harris, S. J.; Walker, A.; McKervey, M. A.; McSweeney, C. C. Anal. Chem. 1997, 69, 2207–2212. doi:10.1021/ac960850q
    Return to citation in text: [1] [2]
  27. Rathore, R.; Abdelwahed, S. H.; Guzei, I. A. J. Am. Chem. Soc. 2004, 126, 13582–13583. doi:10.1021/ja0454900
    Return to citation in text: [1]
  28. Matsubara, H.; Yasuda, S.; Sugiyama, H.; Ryu, I.; Fujii, Y.; Kita, K. Tetrahedron 2002, 58, 4071–4076. doi:10.1016/S0040-4020(02)00256-9
    Return to citation in text: [1]
  29. Chu, Q.; Yu, M. S.; Curran, D. P. Tetrahedron 2007, 63, 9890–9895. doi:10.1016/j.tet.2007.06.092
    Return to citation in text: [1]
  30. Larsen, M.; Jørgensen, M. J. Org. Chem. 1997, 62, 4171–4173. doi:10.1021/jo970120y
    Return to citation in text: [1]
  31. Wong, M. S.; Xia, P. F.; Zhang, X. L.; Lo, P. K.; Cheng, Y.-K.; Yeung, K.-T.; Guo, X.; Shuang, S. J. Org. Chem. 2005, 70, 2816–2819. doi:10.1021/jo048545p
    Return to citation in text: [1] [2]
  32. Mastalerz, M.; Dyker, G.; Flörke, U.; Henkel, G.; Oppel, I. M.; Merz, K. Eur. J. Org. Chem. 2006, 4951–4962. doi:10.1002/ejoc.200600463
    Return to citation in text: [1] [2]
  33. Scheerder, J.; Vreekamp, R. H.; Engbersen, J. F. J.; Verboom, W.; van Duynhoven, J. P. M.; Reinhoudt, D. N. J. Org. Chem. 1996, 61, 3476–3481. doi:10.1021/jo9600262
    Return to citation in text: [1]
  34. Cho, Y. L.; Rudkevich, D. M.; Rebek, J., Jr. J. Am. Chem. Soc. 2000, 122, 9868–9869. doi:10.1021/ja002345n
    Return to citation in text: [1]
  35. Wong, M. S.; Zhang, X. L.; Chen, D. Z.; Cheung, W. H. Chem. Commun. 2003, 138–139. doi:10.1039/b210493h
    Return to citation in text: [1]
  36. Arai, S.; Ohkawa, H.; Ishihara, S.; Shibue, T.; Takeoka, S.; Nishide, H. Bull. Chem. Soc. Jpn. 2005, 78, 2007–2013. doi:10.1246/bcsj.78.2007
    Return to citation in text: [1]
  37. Ohkawa, H.; Arai, S.; Takeoka, S.; Shibue, T.; Nishide, H. Chem. Lett. 2003, 32, 1052–1053. doi:10.1246/cl.2003.1052
    Return to citation in text: [1]

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