Efficient modification of peroxydisulfate oxidation reactions of nitrogen-containing heterocycles 6-methyluracil and pyridine

• Alfiya R. Gimadieva,
• Yuliya Z. Khazimullina,
• Aigiza A. Gilimkhanova and
• Akhat G. Mustafin

Beilstein J. Org. Chem. 2024, 20, 2599–2607, doi:10.3762/bjoc.20.219

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

• C–H hydroxylation process by combining continuous flow chemistry and electrochemistry (Scheme 8) [16]. The surface modification of electrodes can lead to improved reactivity and selectivity. In this regard, Li and coworkers developed electron-deficient W2C nanocrystal-based electrodes to enhance the

HFIP as a versatile solvent in resorcin[n]arene synthesis

• Hormoz Khosravi,
• Valeria Stevens and
• Raúl Hernández Sánchez

Beilstein J. Org. Chem. 2024, 20, 2469–2475, doi:10.3762/bjoc.20.211

• described herein exemplifies that even when protocols are well-established, a simple, yet critical modification may improve access to known species in shorter reaction times, and most importantly unveil new scaffolds that were previously inaccessible. We encourage scientists starting their careers in this

Tandem diazotization/cyclization approach for the synthesis of a fused 1,2,3-triazinone-furazan/furoxan heterocyclic system

• Yuri A. Sidunets,
• Valeriya G. Melekhina and
• Leonid L. Fershtat

Beilstein J. Org. Chem. 2024, 20, 2342–2348, doi:10.3762/bjoc.20.200

• agents contain a 1,2,3-triazine ring [37][38][39]. The structures of some bioactive 1,2,3-triazin-4-one derivatives are shown in Figure 1. Hence, one can assume that molecular hybridization of the 1,2,3-triazin-4-one moiety with the 1,2,5-oxadiazole core can lead to a significant modification of the

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• -crosslinker, is attached synthetically to the basic scaffold (Figure 2A) [28][29][30][31][32]. However, this requires a structure–activity relationship (SAR) screening to ensure that the selected NP retains biological activity after modification. The term probe is further used to unite such NPs and active

• that does not necessitate for NP modification might be desirable. This may include hydrogen–deuterium exchange mass spectrometry (HDX-MS), limited proteolysis-coupled mass spectrometry (LiP–MS), thermal proteome profiling (TPP), cellular thermal shift assay (CETSA), affinity selection-mass spectrometry

• using orthogonal fragmentation techniques [75][76]. Because of the often low number of identified peptides bearing a desired modification, it is difficult to control the false-discovery rate (FDR) of the hits, and thus, the introduction of proper negative controls is of the upmost importance. Thus far

Deuterated reagents in multicomponent reactions to afford deuterium-labeled products

• Kevin Schofield,
• Shayna Maddern,
• Yueteng Zhang,
• Grace E. Mastin,
• Rachel Knight,
• Wei Wang,
• James Galligan and
• Christopher Hulme

Beilstein J. Org. Chem. 2024, 20, 2270–2279, doi:10.3762/bjoc.20.195

• modification of 1d, representative of the large swath of chemical space accessible by Ugi-deprotect-cyclize (UDC) methodology, gave the dihydroquinoxaline 1g in good yield with high deuterium retention [29][30][31][32]. The catalytic three-component Ugi reaction was first reported by List in 2008 [33][34] and

Factors influencing the performance of organocatalysts immobilised on solid supports: A review

• Zsuzsanna Fehér,
• Dóra Richter,
• Gyula Dargó and
• József Kupai

Beilstein J. Org. Chem. 2024, 20, 2129–2142, doi:10.3762/bjoc.20.183

• fine chemical and pharmaceutical industries [9]. The limitation of homogeneous catalysts, however, is their complex, time-consuming and energy-intensive recovery and subsequent recycling. Therefore, synthetic modification of catalysts is a commonly used method to aid their recovery. Obstacles to the

• influence on the properties and thus performance of the resulting heterogeneous catalyst. However, immobilisation and structural modification introduce additional steps in the synthesis of the catalyst. Moreover, the catalytic activity and selectivity of immobilised catalysts are often lower than those of

• spaces. The confinement of the heterogeneous version of cinchona amine and thiourea catalysts was reported, leading to improved enantioselectivity values in the Michael addition of nitromethane (5) to chalcone (6) through modification of the pore size of mesoporous silica 8 or 9 (Scheme 2) [63]. Thus

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• . Specifically, it is possible to check the H atoms, the quality of the structure, evaluate some steric clashes and visualise in a friendly manner the full structure (http://molprobity.biochem.duke.edu/). 2. PDBtools [101]: It is a freely accessible software that allows the manipulation and modification of a PDB

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• intermediary ketenimine 162. The latter undergoes cyclization with elimination to form the corresponding pyrazoles 160 in a one-pot fashion (Scheme 54) [160]. The reaction can be extended by synthesizing hydrazone carboxamides in situ from hydrazine and isocyanates [161]. An unusual modification of alkynones

A new platform for the synthesis of diketopyrrolopyrrole derivatives via nucleophilic aromatic substitution reactions

• Vitor A. S. Almodovar and
• Augusto C. Tomé

Beilstein J. Org. Chem. 2024, 20, 1933–1939, doi:10.3762/bjoc.20.169

• spectra are very similar. These results indicate that substituents with different functional groups can be attached to DPP 2 without significant modification of their optical properties. The observed Stokes shifts for dyes 3 and 4 averaged in the range of 60–70 nm. All compounds exhibited high

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• use of triflic acid (TfOH) resulted also in the cleavage of the alkyl group derived from the isocyanide, with formation of 47 (Scheme 18). Kanizsai et al. [51] have reported the synthesis of 4,5-disubstituted 2-amino-1H-imidazoles and their further modification through the GBB-3CR. The 2

• precursors which can be involved in further modifications. In addition, the GBB-like reactions can also be used to deliver other heterocyclic motifs. 3.1 One-pot synthesis As an efficient approach in organic synthesis, one-pot synthesis has been exploited in the post-modification of GBB products. This

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• is recognized by post-translational enzymes and a core peptide where these enzymes produce the formation of Dha-Cys or Dhb-Cys residues. The post-translational modification enzymes involved span different functional domains (a cyclase and a dehydratase), and their activity is tightly controlled at

• -translational modification enzymes The selected supercluster is predicted to be formed by two adjacent, biosynthetically complete transcriptional units, each with specific promoter and terminator sites (Figure 2) containing two LanM enzymes (CloM1 and CloM2), the precursor peptides CloA1 and CloA2, as well as

• predictions suggesting that this should be a functional system. This lack of modification could be due to the amino acid sequence of the precursor, which differs from those described in the literature, or to mutations in the CloM1 enzyme. These mutations may require additional co-factors or specific

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• well as their analogs, is outlined with an emphasis on comparing these chemo-enzymatic syntheses with the corresponding natural biosynthetic pathways. Keywords: chemo-enzymatic synthesis; late-stage modification; reactive biosynthetic intermediate; regio- and stereoselective (macro)cyclization; total

• pentacyclic scaffolds. The designed and chemically synthesized substrate analog 96 was tolerated by the key NRPS module SfmC despite the structural modification (Scheme 10A). In vitro enzymatic conversion of 96 with tyrosine derivative 86 [103] followed by the addition of KCN concisely furnished the

• relies heavily on enzyme selection and substrate design. The first strategy, "site- and stereoselective late-stage modification", was highlighted by demonstrating the systematic total synthesis of cotylenol (1) and its related natural products, brassicicenes (Scheme 2 and Scheme 3). Natural and

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• encoded in the same BGC as the precursor peptide install post-translational modifications in the core peptide. Finally, a protease releases the modified core peptide, creating the mature natural product [2]. The transfer of a methyl group is a common post-translational modification in RiPP biosynthesis

• ]. Further O-MTs can be classified based on a common acceptor group of modification, namely C-terminal carboxy-MTs and peptide/protein ʟ-aspartyl O-MTs (PAMTs). C-terminal carboxymethyltransferases Carboxy-MTs catalyse the formation of a methyl ester by methylating the oxygen atom within the hydroxy group of

• aspartimide intermediates (Figure 6). The activity of most PAMTs depends on a cyclised precursor peptide. Modification of the aspartate/isoaspartate residue was found only in a hairpin-like or the macrocyclic region [71][78]. The underlying purpose of this structural requirement of PAMTs has not yet been

Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• fundamentally signaling molecules and enzymatic modification of AQs by Microbulbifer could represent a mechanism of ecological cross-talk among marine microbiomes. Enzymatic halogenation of other signaling molecules, such as that of acyl homoserine lactones, has been postulated to modulate bacterial

New triazinephosphonate dopants for Nafion proton exchange membranes (PEM)

• Fátima C. Teixeira,
• António P. S. Teixeira and
• C. M. Rangel

Beilstein J. Org. Chem. 2024, 20, 1623–1634, doi:10.3762/bjoc.20.145

• membranes for these electrochemical devices [14][20]. However, many technological limitations remain due to the high dependence of the membrane’s performance on the presence of water or other electrolyte content. To overcome these limitations, the modification of the membrane can be done by the

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• photoisomerization from O-DA7 to C-DA7 and from O-DA6 to C-DA6 in aqueous solutions. No thermal back reaction was observed for DA7 (Figure S3, Supporting Information File 1) and DA6 (Figure S4, Supporting Information File 1), similarly to DA11 and DA10. The results indicated that even a subtle modification of the

Mining raw plant transcriptomic data for new cyclopeptide alkaloids

• Draco Kriger,
• Michael A. Pasquale,
• Brigitte G. Ampolini and
• Jonathan R. Chekan

Beilstein J. Org. Chem. 2024, 20, 1548–1559, doi:10.3762/bjoc.20.138

• -translational modifications by specific tailoring enzymes [5][6]. This precursor peptide substrate can be subdivided into multiple segments including 1) an N-terminal leader or recognition sequence used for binding by the tailoring enzymes and 2) a core peptide that is targeted for modification by the

• (Figure 7 and Supporting Information File 1, Figures S13–S15). While unusual, this motif could be biosynthetically related to the alpha-hydroxy modification seen in vignatic acid [35]. These potential compounds are bicyclic which resemble the bicyclic motif found in moroidin from the closely related C

Bioinformatic prediction of the stereoselectivity of modular polyketide synthase: an update of the sequence motifs in ketoreductase domain

• Changjun Xiang,
• Shunyu Yao,
• Ruoyu Wang and
• Lihan Zhang

Beilstein J. Org. Chem. 2024, 20, 1476–1485, doi:10.3762/bjoc.20.131

• formed during post-PKS modification [22][34]. To gain a better understanding of the stereoselectivity of KRs in γ- and δ-modules, we focused on KRs associated with an inactive DH domain (DH0) that still produce a β-hydroxy intermediate. These KRs are phylogenetically mixed together with those in γ- and δ

Synthesis of 2-benzyl N-substituted anilines via imine condensation–isoaromatization of (E)-2-arylidene-3-cyclohexenones and primary amines

• Lu Li,
• Na Li,
• Xiao-Tian Mo,
• Ming-Wei Yuan,
• Lin Jiang and
• Ming-Long Yuan

Beilstein J. Org. Chem. 2024, 20, 1468–1475, doi:10.3762/bjoc.20.130

• reaction media led to higher yields. More precisely, dimethoxyethane (DME) gave a superior result to THF, affording 4aa in 82% yield (Table 1, entries 10–16). Subsequently, modification of the reaction temperature or concentration turned out to be unsatisfactory (Table 1, entries 17–19). We also added 4 Å

Synthesis of substituted triazole–pyrazole hybrids using triazenylpyrazole precursors

• Simone Gräßle,
• Laura Holzhauer,
• Nicolai Wippert,
• Olaf Fuhr,
• Martin Nieger,
• Nicole Jung and
• Stefan Bräse

Beilstein J. Org. Chem. 2024, 20, 1396–1404, doi:10.3762/bjoc.20.121

• sources and thus as building blocks for synthesizing pyrazolyltriazoles by CuAAC reactions. To find a feasible approach to pyrazolyltriazoles of type 1 with a highly substituted scaffold, we decided to explore the benefits of a modification of the triazene-protected pyrazole core. In the next step, a

Synthesis and physical properties of tunable aryl alkyl ionic liquids based on 1-aryl-4,5-dimethylimidazolium cations

• Stefan Fritsch and
• Thomas Strassner

Beilstein J. Org. Chem. 2024, 20, 1278–1285, doi:10.3762/bjoc.20.110

• introduced a new class of ionic liquids based on the 1-aryl-3-alkylimidazolium cation in 2009, the tunable aryl alkyl ionic liquids (TAAILs) [29]. This class of ionic liquids allows the modification of physical and chemical properties by variation of the functional groups present at the aryl ring of the

The Ugi4CR as effective tool to access promising anticancer isatin-based α-acetamide carboxamide oxindole hybrids

• Carolina S. Marques,
• Aday González-Bakker and
• José M. Padrón

Beilstein J. Org. Chem. 2024, 20, 1213–1220, doi:10.3762/bjoc.20.104

• [8][9]. In the last few years we have been active in isatin modification using new synthetic approaches, anticipating the creation of new libraries of small-molecule hybrids with potential as cholinesterase inhibitors [10][11][12][13], important to treat neurodegenerative diseases, and anticancer

Light on the sustainable preparation of aryl-cored dibromides

• Fabrizio Roncaglia,
• Alberto Ughetti,
• Nicola Porcelli,
• Biagio Anderlini,
• Andrea Severini and
• Luca Rigamonti

Beilstein J. Org. Chem. 2024, 20, 1076–1087, doi:10.3762/bjoc.20.95

• dissolved in aqueous hydrogen peroxide and was gradually added to the reaction mixture, containing the remaining chemicals. The addition time of this aqueous reagent was also shortened to 15 minutes, to counteract the slow decomposition of H2O2 caused by NaBr. This modification ultimately resulted in nearly

• , when used with light irradiation as halogen initiator, is capable of selectively convert xylene isomers and mesitylene into their corresponding benzyl bromides, regardless the presence of halogen atoms on the core. Moreover, under dark conditions, a modification of the same method allows the

Novel route to enhance the thermo-optical performance of bicyclic diene photoswitches for solar thermal batteries

• Akanksha Ashok Sangolkar,
• Rama Krishna Kadiyam and
• Ravinder Pawar

Beilstein J. Org. Chem. 2024, 20, 1053–1068, doi:10.3762/bjoc.20.93

• modification, the storage energy of 158.57 kJ/mol, energy storage density of 1.48 MJ/kg, TBR barrier of 136.36 kJ/mol, and the absorption onset of 305.00 nm is achieved in acetonitrile. These values are substantially higher when compared with the storage energy (96.06 kJ/mol), energy storage density (1.04 MJ