Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• the presence of Cs2CO3. To explore the possibility of N2-selectivity, we hypothesized that the phosphine intermediate of a Mitsunobu reaction could provide chelation control, directing alkylation to the indazole N2-atom while using identical alcohols as described above. Thus, we subjected 6 to simple

• yields from the same carbon sources through reagent control. Experimental General methods All materials were obtained from commercial suppliers and used without further purification unless otherwise noted. Anhydrous solvents were obtained from Sigma-Aldrich and used directly. Reactions involving air- or

Negishi-coupling-enabled synthesis of α-heteroaryl-α-amino acid building blocks for DNA-encoded chemical library applications

• Matteo Gasparetto,
• Balázs Fődi and
• Gellért Sipos

Beilstein J. Org. Chem. 2024, 20, 1922–1932, doi:10.3762/bjoc.20.168

• with the Negishi cross-coupling step in a continuous flow manner [41][42][43]. Continuous flow chemistry offers superior control over reaction parameters compared to traditional batch methods. This approach leads to reproducible reactions, improved safety features, and it can facilitate high-throughput

Solvent-dependent chemoselective synthesis of different isoquinolinones mediated by the hypervalent iodine(III) reagent PISA

• Ze-Nan Hu,
• Yan-Hui Wang,
• Jia-Bing Wu,
• Ze Chen,
• Dou Hong and
• Chi Zhang

Beilstein J. Org. Chem. 2024, 20, 1914–1921, doi:10.3762/bjoc.20.167

• control plant diseases but also have some herbicidal activity. Compound I showed good inhibitory activity against Sclerotinia sclerotiorum on detached oilseed rape leaves [8], and compound II has excellent herbicidal activity against dicot weeds, such as Zinnia elegans Jacq. and Abutilon theophrasti

• - or 4-substituted isoquinolinone derivatives with excellent chemoselectivity. These interesting findings led us to investigate the reaction mechanism. To gain insight into the mechanism and chemoselectivity of the reactions above, we performed a control experiment. With acetonitrile as the solvent, a

• aforementioned control experiment and literature precedents, we proposed a mechanism for the formation of 4-substituted isoquinolinone derivatives, including 2a. The reaction begins by tautomerization of 1a, and PISA undergoes an electrophilic reaction with 1a' to form the iodane intermediate A. The iodane A

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• representative radical cation precursors that are widely used to realize the formation of unique bonds. The respective radical cations are trapped by various nucleophiles under radical and/or ion control, where kinetic and/or thermodynamic effects are expected to be dominant. Typical examples that clearly show

• mmol), Bu4NOTf (0.1 M), TFA (1 equiv), CH3CN (0.4 mL), and 1,2-DCE (3.6 mL). Yields reported here are isolated yields. Mechanistic studies of aza-Wacker cyclization. A: Electrochemical (Bu4NOTf in CH3CN/1,2-DCE), B: non-electrochemical (LiClO4 in CH3NO2). Control studies for electrochemical aza-Wacker

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• -substituted products 60 underwent TFA-promoted deprotection which triggered the intramolecular cyclization to furnish the indole moiety in the desired products 61. A control experiment showed that the GBB product 60 was obtained as the sole product in the absence of acid catalyst. Another group developed the

A facile three-component route to powerful 5-aryldeazaalloxazine photocatalysts

• Ivana Weisheitelová,
• Radek Cibulka,
• Marek Sikorski and
• Tetiana Pavlovska

Beilstein J. Org. Chem. 2024, 20, 1831–1838, doi:10.3762/bjoc.20.161

• the benzene ring of the 5-deazaalloxazine core at 7.64 and 7.71 ppm. To support this theory, we conducted a control experiment between 3,4-dimethoxyaniline (3b) and N,N-dimethylbarbituric acid (5) in DMSO. To our delight, 5-deazaalloxazine 6 was formed (Scheme 2B). To prove that DMSO was the methylene

• . aReaction was done in DMF/AlCl3. bIsolation requires precipitation with 2-propanol. c2 days. Control experiments related to bulky substituted aldehydes. Optimization of the reaction conditions for the synthesis of 2a. Supporting Information Supporting Information File 28: Spectroscopic and analytical data

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• producing strains were not distinct from the control ones, transformed with the empty vector. As a result, it was not surprising that there was no effect on the E. coli test strains, which confirmed previous observations. For S. epidermidis MIQ43, P. aeruginosa ATCC PA14, and MIQPA25, both clostrisin and

• cellulosin samples displayed robust bacteriostatic activity at the highest estimated concentration of 5.6 µg/mL and 4.8 µg/mL, respectively, compared to the bacteria grown in LB media (control), and lower but statistically significant effects at lower concentrations (Figure 5). The immature peptides CloA1

Synthesis of polycyclic aromatic quinones by continuous flow electrochemical oxidation: anodic methoxylation of polycyclic aromatic phenols (PAPs)

• Hiwot M. Tiruye,
• Solon Economopoulos and
• Kåre B. Jørgensen

Beilstein J. Org. Chem. 2024, 20, 1746–1757, doi:10.3762/bjoc.20.153

• control of the current [32][33][34]. Early studies on the electrochemical oxidation of phenols revealed that the oxidation passes through a phenoxonium ion and forms acetals in methanol but quinones in the presence of water [35][36][37]. However, the reaction is sometimes accompanied by the formation of

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• bioassays against multi-drug resistant parasite Plasmodium yoelii in Swiss mice revealed that pregnane-based trioxanes 161b were the most active compounds, showing 100% suppression of parasitemia on day 4 at 48 mg/kg × 4 days, a similar activity to that of β-arteether used as positive control. Bis

• Plasmodium falciparum chloroquine-resistant W2 clone, whereas N-propylamides showed better activity against the D6 clone. Among them, compound 167c had the best activity (IC50 = 9.29 nM against the D6 clone), almost as good as artemisinin (IC50 = 8.6 nM) used as control. Tetraoxanes were also screened for

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• synthesized 33 generated the highly reactive intermediate 34 in aqueous solvents under mild conditions [37][42]. In this process, the co-solvent (cs) allowed control of the dimerization modes via either Michael addition or Diels–Alder reactions, facilitating the systematic total synthesis of the

• experimental results, Gulder and co-workers devised a strategy to control the dimerization modes by adjusting the polarity of the organic co-solvent to establish the divergent synthesis of dimeric scaffolds. Indeed, with 20% DMF in the SorbC-catalyzed enzymatic oxidative dearomatization, the Michael addition

• tolerance through enzyme mutagenesis should allow more precise control over scaffold-constructing reactions. As with the related natural products, hybrid sorbicillinoids were also known to be biosynthesized through Diels–Alder reactions between diene 34 and non-sorbicillinoid-derived dienophiles [29

A fiber-optic spectroscopic setup for isomerization quantum yield determination

• Anouk Volker,
• Jorn D. Steen and
• Stefano Crespi

Beilstein J. Org. Chem. 2024, 20, 1684–1692, doi:10.3762/bjoc.20.150

• (Avantes IC-DB26-RM), which allows the proprietary software AvaSoft from Avantes to control the internal shutter of the light source via a PC. With this configuration, starting a single measurement in AvaSoft sends a TTL signal to the light source that opens the shutter, which is followed by the

• acquisition of a spectrum, and finally a TTL signal is sent to close the shutter again. By utilizing scripts we developed (see Supporting Information File 1), it is possible to precisely control the timing of irradiation of the sample with the LED and the perpendicular illumination with the UV–vis probe. In

Ring opening of photogenerated azetidinols as a strategy for the synthesis of aminodioxolanes

• Henning Maag,
• Daniel J. Lemcke and
• Johannes M. Wahl

Beilstein J. Org. Chem. 2024, 20, 1671–1676, doi:10.3762/bjoc.20.148

• ). The corresponding protecting group (PG) was thought to control the conformation of the 1,4-biradical 2, which is known to be important for efficient Norrish–Yang cyclizations [27][28]. Furthermore, the PG was deemed crucial for the development of further functionalizations of the azetidinols (vide

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• , ions, and heat [15][16][17][18][19][20][21][22]. Light enables noninvasive stimulation with high spatial and temporal precision to control structural transformations of supramolecular assemblies in organic and aqueous media [19][23][24][25]. Various photochromic and photoresponsive moieties, such as

Regio- and stereochemical stability induced by anomeric and gauche effects in difluorinated pyrrolidines

• Ana Flávia Candida Silva,
• Francisco A. Martins and
• Matheus P. Freitas

Beilstein J. Org. Chem. 2024, 20, 1572–1579, doi:10.3762/bjoc.20.140

• conformational stability of proline-rich proteins such as collagen [2]. Therefore, pyrrolidine derivatives are particularly susceptible to conformational control induced by a fluorine substituent. The 5-membered pyrrolidine ring is a cyclic alkylamine that adopts a conformation that resembles the familiar

• fluorine gauche effects to evaluate significant conformational biases in all of the possible isomers. Achieving conformational control upon the introduction of a second fluorine atom in fluoropyrrolidine presents challenges. Unlike the chair-like conformation of six-membered rings, five-membered rings lack

Benzylic C(sp³)–H fluorination

• Alexander P. Atkins,
• Alice C. Dean and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 1527–1547, doi:10.3762/bjoc.20.137

• and oxidation potentials. Electrochemical methods Synthetic electrochemistry is a powerful tool offering excellent control over reaction kinetics and selectivity [86]. Electrochemical oxidation has been demonstrated as an efficient means for generating benzylic cations, allowing for the introduction

• -oxidation and decomposition to improve the reaction efficiency overall. Conclusion The fluorination of benzylic C(sp3)–H bonds provides rapid access to an important functional group used in medicinal chemistry to control the pharmacokinetic profile of drug candidates. Historical and recent research efforts

Tetrabutylammonium iodide-catalyzed oxidative α-azidation of β-ketocarbonyl compounds using sodium azide

• Christopher Mairhofer,
• David Naderer and
• Mario Waser

Beilstein J. Org. Chem. 2024, 20, 1510–1517, doi:10.3762/bjoc.20.135

• peroxide catalyzed by tetrabutylammonium iodide (TBAI). By utilizing these readily available bulk chemicals a variety of cyclic β-ketocarbonyl derivatives can be efficiently α-azidated under operationally simple conditions. Control experiments support a mechanistic scenario involving in situ formation of

• -yielding conditions for the synthesis of 2a, we next carried out a series of control experiments in order to address the role of the catalyst’s counter anion and the oxidant (Table 2). Running the reaction of 1a and NaN3 in the presence of stoichiometric amounts of Bu4NI3, I2, Bu4NIO3, or Bu4NIO4 did not

• the presence of a catalytic amount of tetrabutylammonium iodide (TBAI). Control experiments support a mechanistic scenario proceeding via in situ formation of a catalytically competent quaternary ammonium hypoiodite first. This higher oxidation state species then facilitates the α-iodination of the

Electrophotochemical metal-catalyzed synthesis of alkylnitriles from simple aliphatic carboxylic acids

• Yukang Wang,
• Yan Yao and
• Niankai Fu

Beilstein J. Org. Chem. 2024, 20, 1497–1503, doi:10.3762/bjoc.20.133

• , the corresponding alkylnitrile product was obtained in 86% yield after electrolysis at 3.0 mA for 4 hours, demonstrating the high Faradaic efficiency of the reaction (Table 1, entry 5) [46]. Control experiments revealed that Ce catalyst, Cu catalyst, light, and electricity were all essential for the

Photoswitchable glycoligands targeting Pseudomonas aeruginosa LecA

• Yu Fan,
• Ahmed El Rhaz,
• Stéphane Maisonneuve,
• Emilie Gillon,
• Maha Fatthalla,
• Franck Le Bideau,
• Guillaume Laurent,
• Samir Messaoudi,
• Anne Imberty and
• Juan Xie

Beilstein J. Org. Chem. 2024, 20, 1486–1496, doi:10.3762/bjoc.20.132

• antibiotic-sparing anti-infective drugs. Building synthetic glycoconjugates for the inhibition and modulation of bacterial lectins have shown promising results. Light-sensitive lectin ligands could allow the modulation of lectins activity with precise spatiotemporal control. Despite the potential of

• /off or from low to high. This strategy can be used for specific targeting or local drug activation to reduce its toxicity [14]. There is an increasing use of the photoisomerization to control the conformation as well as the activities of various biomolecules with the development of photopharmacology

• [11][12][13][14][15][16][17][18]. The group of Lindhorst has reported a series of mannosyl azobenzenes targeting E. coli lectin FimH, demonstrating the possibility to control the type 1 fimbriae-mediated bacterial adhesion to a self-assembled monolayer of mannosyl azobenzene on a gold surface [19][20

Bioinformatic prediction of the stereoselectivity of modular polyketide synthase: an update of the sequence motifs in ketoreductase domain

• Changjun Xiang,
• Shunyu Yao,
• Ruoyu Wang and
• Lihan Zhang

Beilstein J. Org. Chem. 2024, 20, 1476–1485, doi:10.3762/bjoc.20.131

• elongated growing chain may undergo further processing by KR, DH, and ER domains, generating β-hydroxy, α,β-alkene, and saturated β-methylene groups, respectively (Figure 1a). KR domains have garnered significant attention from researchers due to their ability to control the stereochemistry at the α- and β

Synthesis of cyclic β-1,6-oligosaccharides from glucosamine monomers by electrochemical polyglycosylation

• Md Azadur Rahman,
• Hirofumi Endo,
• Takashi Yamamoto,
• Shoma Okushiba,
• Norihiko Sasaki and
• Toshiki Nokami

Beilstein J. Org. Chem. 2024, 20, 1421–1427, doi:10.3762/bjoc.20.124

• ][7][8][9][10]. Thus, chemical glycosylation has to be improved to be able to synthesize complex oligosaccharides, including cyclic oligosaccharides. In this context, electrochemical glycosylation is an important alternative to conventional chemical glycosylations because the precise control of

Challenge N- versus O-six-membered annulation: FeCl₃-catalyzed synthesis of heterocyclic N,O-aminals

• Giacomo Mari,
• Lucia De Crescentini,
• Gianfranco Favi,
• Fabio Mantellini,
• Diego Olivieri and
• Stefania Santeusanio

Beilstein J. Org. Chem. 2024, 20, 1412–1420, doi:10.3762/bjoc.20.123

• procedures [16], our consolidated 3-CR strategy [17][18][19] implicates a careful selection of the starting components that ensures the installation of functionalities to be converged, by regioselective control, in different ring-closing processes [20][21]. With these considerations in mind and with the aim

• process and developed a catalytic system-controlled selective intramolecular N-annulation process for ring-fused biheterocyclic N,O-aminal derivatives as stable imine equivalents and useful tools for new bond formation in view of further fused-heterocylization processes. Moreover, control experiments

• formation of N,O-aminals 5 and hemiaminals 6. Control mechanistic experiments. Optimization conditions for the Lewis acid-catalyzed intramolecular cyclization of 4a. Supporting Information Supporting Information File 16: General experimental information, synthetic procedures, analytical data and NMR

Hypervalent iodine-catalyzed amide and alkene coupling enabled by lithium salt activation

• Akanksha Chhikara,
• Fan Wu,
• Navdeep Kaur,
• Prabagar Baskaran,
• Alex M. Nguyen,
• Zhichang Yin,
• Anthony H. Pham and
• Wei Li

Beilstein J. Org. Chem. 2024, 20, 1405–1411, doi:10.3762/bjoc.20.122

• entry 7 in Table 1, resulting in the formation of the desired oxazoline product 3 in 61% isolated yield. Control reactions in the absence of either the precatalyst or oxidant afforded no product formation (Table 1, entries 11 and 12). The control reaction in the absence of the lithium salt only afforded

Generation of alkyl and acyl radicals by visible-light photoredox catalysis: direct activation of C–O bonds in organic transformations

• Mithu Roy,
• Bitan Sardar,
• Itu Mallick and
• Dipankar Srimani

Beilstein J. Org. Chem. 2024, 20, 1348–1375, doi:10.3762/bjoc.20.119

• was applicable to various carboxylic acids with electron-donating as well as electron-withdrawing substituents but unfortunately, aliphatic acids were not effective in this reaction. In addition, several control experiments, such as fluorescence quenching and Stern–Volmer studies, were done to analyze

Transition-metal-catalyst-free electroreductive alkene hydroarylation with aryl halides under visible-light irradiation

• Kosuke Yamamoto,
• Kazuhisa Arita,
• Masami Kuriyama and
• Osamu Onomura

Beilstein J. Org. Chem. 2024, 20, 1327–1333, doi:10.3762/bjoc.20.116

• the reaction efficiency (Table 1, entries 4–7). The effects of a series of redox mediators on the reaction outcomes were examined, and none gave a better reaction outcome than 1,3-DCB (Table 1, entries 8–12). Control experiments revealed that both visible-light irradiation and the presence of 1,3-DCB

• , providing the corresponding product 3aa in 74% yield. Several control experiments were conducted to gain insight into the reaction mechanism of the electroreductive process. The hydroarylation of cyclopropane-substituted styrene 2l resulted in the formation of ring-opening product 3al’, and the simple

• ), 1,3-DCB (50 mol %), H2O (5.0 mmol), Et4NCl (0.1 mmol), MeCN (3 mL), Al(+)-Pt(−), 7.5 mA/cm2, 4.5 F/mol, 0 °C, blue LEDs. a4.5 F/mol. b2 (5 equiv). cMeCN (3 mL). d5 F/mol. 1,3-DCB, 1,3-dicyanobenzene. Gram-scale reaction and control experiments. Plausible mechanism. Evaluation of reaction conditions.a

Computation-guided scaffold exploration of 2E,6E-1,10-trans/cis-eunicellanes

• Zining Li,
• Sana Jindani,
• Volga Kojasoy,
• Teresa Ortega,
• Erin M. Marshall,
• Khalil A. Abboud,
• Sandra Loesgen,
• Dean J. Tantillo and
• Jeffrey D. Rudolf

Beilstein J. Org. Chem. 2024, 20, 1320–1326, doi:10.3762/bjoc.20.115

• reactants. We note here, circumstantially, that no Cope rearrangement products of cis-eunicellanes have been reported. Overall, the trans ring fusion of the 2E,6E-trans-eunicellanes appears to control whether Cope rearrangement is energetically possible. In the same biosynthetic study [10], we also