Studies on the synthesis of peptides containing dehydrovaline and dehydroisoleucine based on copper-mediated enamide formation

  1. Franziska Gille and
  2. Andreas Kirschning

Institute of Organic Chemistry and Center of Biomolecular Drug Research (BMWZ), Leibniz University Hannover, Schneiderberg 1b, 30167 Hannover, Germany

  1. Corresponding author email

This article is part of the Thematic Series "Copper catalysis in organic synthesis".

Guest Editor: S. R. Chemler
Beilstein J. Org. Chem. 2016, 12, 564–570. doi:10.3762/bjoc.12.55
Received 03 Dec 2015, Accepted 02 Mar 2016, Published 22 Mar 2016

Abstract

The preparation of peptide fragments containing dehydrovaline and dehydroisoleucine moieties present in the antibiotic myxovalargin is reported. Peptide formation is based on a copper-mediated C–N cross-coupling protocol between an acyl amide and a peptidic vinyl iodide. The presence of a neighboring arginine in the vinyl iodide posed a challenge with respect to the choice of the protecting group and the reaction conditions. It was found that ornithine – a suitable precursor – is better suited than arginine for achieving good yields for the C–N cross-coupling reaction. The optimized conditions were utilized for the synthesis of peptides 32, 33, 39 and 40 containing a neighboring ornithine as well as for the tripeptide 44 containing dehydroisoleucine with the correct stereochemistry.

Keywords: catalysis; dehydroamino acids; Hartwig–Buchwald reaction; myxovalargin; peptides

Introduction

Dehydroamino acids [1] are rare amino acids that are constituents of many oligopeptides from microbial sources. Typical examples are myxovalargin (1), argyrin (2) and nisin (3, Scheme 1).

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Scheme 1: Selected examples of oligopeptides bearing dehydroamino acid moieties: myxovalargin (1), argyrin A (2) and nisin (3) (in myxovalargin dehydroamino acids and neighboring amino acids are numbered).

Dehydroamino acids and peptides are characterized by the presence of an olefinic double bond conjugated with the carboxyl or peptidic carbonyl group. Besides being α,β-unsaturated acids or amides, respectively, they can also be regarded as enamines. Due to the lack of reactivity of the amino group as well as the carboxylate, dehydroamino acids have hardly employed as building blocks in peptide synthesis. Therefore, the olefinic double bond is commonly introduced after the peptide backbone is assembled and typically this is achieved by elimination when a leaving group occupies the β-position [2]. Especially peptides containing dehydroalanine as found in argyrin (2) can be prepared from a precursor that contains a selenide substituent in the β-position [3]. Peptides that bear the doubly branched dehydroamino acids dehydrovaline or dehydroisoleucine, e.g., found in myxovalargin (1), are much more challenging to prepare due to steric hindrance in the β-position and the issue of regiocontrol during elimination [4,5], as β-elimination of a tertiary alcohol group often leads to the terminal instead of the conjugated alkene.

Principally, enamides can also be prepared by the copper-mediated C–N coupling between a vinyl halide 6 and an amide 5 as reported by Ogawa and co-workers in 1991 [6]. Later, the group of Porco showed that copper(I) thiophencarboxylate is a suitable catalyst to promote this reaction in the presence of cesium carbonate as base and N-methylpyrrolidone (NMP) as solvent [7,8]. Buchwald et al. [9] simplified the conditions by demonstrating that copper(I) iodide, potassium carbonate and the ligand N,N-dimethylethylenediamine can be used instead. Finally, Ma and co-workers [10] further modified the conditions using copper(I) iodide, cesium carbonate and N,N-dimethylglycine in 1,4-dioxane. Recently, Inoue applied this cross-coupling protocol to the synthesis of peptides (Scheme 2) [11,12] as demonstrated in the total synthesis of Yaku'amide A [13].

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Scheme 2: The Buchwald cross-coupling reaction in the preparation of peptides containing dehydroamino acids 4.

As part of our study on the total synthesis of myxovalargin (1), a secondary metabolite from Myxococcus fulvus with antibacterial activity [14,15], we report on copper-mediated cross-coupling chemistry to create peptide fragments bearing dehydrovaline and dehydroisoleucine. We faced difficulties to use the reported conditions for the C–N cross coupling in the preparation of myxovalargin peptide fragments mainly because of the steric hindrance of β,β’-disubstituted dehydroamino acids created. Additionally, the neighboring amino acid, especially arginine or ornithine, a precursor for preparing arginine (amino acid number 9 in 1), can be made responsible. Thus, this report covers our efforts to optimize the copper-mediated cross-coupling reaction in the preparation of dehydroamino acid containing peptide fragments present in myxovalargin (peptides containing amino acids 3-methylbutyric acid 1, 2, 7–9 and 11–13).

Results and Discussion

First vinyl iodide 10, representing dehydrovaline, was prepared by an established sequence starting from alkynyl ester 8. Under similar conditions vinyl iodide 11 which resembles dehydroisoleucine was obtained as a single diastereoisomer starting from alkynyl ester 9 (Scheme 3). The stereochemistry of the ethyl ester of 11 was determined NMR spectroscopically including nOe experiments (see Supporting Information File 1). Next, vinyl iodide 10 was subjected to amidation with L-alanine methylate (resembling position 2 in myxovalargin) using the reagent system PyAOP, HOAt, DIPEA to yield amide 12 (Table 1). Now, the stage was set to optimize the C–N coupling conditions using amide 13 as coupling partner, the 3-methylbutyric acid located at the terminus of myxovalargin (1).

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Scheme 3: Syntheses of vinyl iodides 10 and 11.

Table 1: Formation of amide 12 and optimization of C–N cross coupling reaction.

[Graphic 1]
entry conditions 12 (equiv) 12 (% reisolated) 14 (% yield) 15 (% yield)
1 16, Cs2CO3, 16 h, 50 °C 1.5 31
2 16, Cs2CO3, 26 h, 50 °C 1.5 0 nd
3 16, Cs2CO3, 24 h, rt 1.5 60 ~15 0
4a TMEDA, Cs2CO3, 20 h, rt 1.5 no reaction
5a piperidine-2-carboxylate,
K2CO3, 20 h, rt
1.5 no reaction
6 17, K2CO3, 22 h, 50 °C 2.0 43 35 0
7 17, K2CO3, 20 h, 70 °C 2.0 57 35 0
8 17, Na2CO3, 20 h, 70 °C 2.0 66 25 0

aCuI (1.0 equiv) was used instead of 0.6 equiv of CuI.

Under the published conditions [13] (vinyl iodide (1.5 equiv), amide (1.0 equiv), CuI (0.6 equiv), Cs2CO3 (2.0 equiv), N,N-dimethylethylenediamine 16 (4.05 equiv), 1,4-dioxane, 90 °C) we did not encounter the formation of enamide 14 but instead only the hydrolysis product 15 was isolated which might have resulted from the presence of oxygen in the solvent. Therefore, we decreased the temperature and only degassed 1,4-dioxane was used in order to avoid oxidation and formation of copper(II) which can act as a Lewis acid. These changes provided peptide 14 (Table 1, entry 1) but this result turned out not to be reproducible. Instead, when the reaction time was extended, only the formation of the α-ketoamide 15 was encountered (Table 1, entry 2). Change of the solvent to THF or toluene as well as the use of palladium catalysts [16] or the use of additives such as HMPA mainly led to substantial decomposition of vinyl iodide 12. At room temperature only small amounts of product were formed but the vinyl iodide was stable (Table 1, entry 3). The presence of the ligand was essential and the choice of other amines such as tetramethylethylendiamine (TMEDA) (Table 1, entry 4) or piperidine-2-carboxylate did not lead to product formation (Table 1, entry 5).

However, (rac)-trans-N,N-dimethyl-1,2-cyclohexanediamine (17) [9] in combination with cesium carbonate or potassium carbonate, the latter being superior to the former base, in 1,4-dioxane provided conditions that allowed us to prepare the coupling product 14 at room temperature. When raising the temperature to 50 °C the desired coupling product was isolated in 35% yield along with a substantial amount of starting vinyl iodide (Table 1, entry 6). When N,N-dimethylethylenediamine (16) was employed under these conditions instead, the coupling product formed only in traces. When potassium carbonate was exchanged by sodium carbonate the yield dropped to 25% under the optimized conditions (Table 1, entry 8).

Next, we tested these reaction conditions for the preparation of the other dehydrovaline bearing peptide fragment of myxovalargin 1 (amino acids 7–9). First, dipeptides 1821 and methyl esters 22 and 23 were N-acylated with vinyl iodide 10 to yield peptidic vinyl iodides 2429 in commonly good yields (Scheme 4). The coupling partners 1823 (synthesis see Supporting Information File 1) all contain arginine or the precursor amino acid ornithine and they differ in the choice of the protecting group. These variations are important for gaining flexibility towards the end of the total synthesis when the guanidine group has either to be liberated by the removal of the protecting groups or used for the introduction to the corresponding ornithine residue.

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Scheme 4: Preparation of vinyl iodides 2429 (Cbz = benzyloxycarbonyl, Alloc = allyloxycarbonyl, Boc = tert-butyloxycarbonyl, Pbf = 2,2,4,6,7-pentamethyldihydrobenzofurane-5-sulfonyl).

These results demonstrate that the copper-mediated cross-coupling reaction depends on the functional groups present in the peptide containing the vinyl iodide moiety and on the chosen protecting groups. Vinyl iodides bearing an arginine moiety gave a significantly reduced yield of the desired cross-coupling product compared to the corresponding ornithine derivatives.

Furthermore, it turned out that the Alloc and Pbf protecting groups are not compatible for this enamide forming protocol. The best results were obtained by using the Boc-protected amide 30 and ornithine-containing vinyl iodides 24 and 28 (Scheme 5).

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Scheme 5: Copper-mediated C–N cross-coupling of dehydropeptides 31–33, 36, 37, and 3941.

It needs to be noted that the presence of a Cbz protecting group in dehydrooligopeptides is problematic, because it cannot be cleaved without simultaneously reducing the acyl enamide. We found that the Teoc protecting group is better suited to be removed from oligoamides 39 and 40, respectively, which were formed from amide 38 and vinyl iodides 29 and 35 (Scheme 5) [17]. Facile removal of the Teoc group was achieved within 24 h at room temperature in quantitative yield using a 1 M solution in TBAF in THF.

With these results in hand we next coupled amide 42 with Boc-protected valine-derived amide 43. To our delight, the coupling proceeded in an improved yield of 48% without scrambling of the stereochemistry of the olefinic double bond (Scheme 6). We based the stereochemical assignment on NMR spectroscopy which included nOe experiments.

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Scheme 6: C–N coupling reaction between amide 43 and vinyl iodide 42; formation of dehydroisoleucine containing peptide 44. nOe assignments (tripeptide corresponds to amino acids 11–13 in myxovalargin (1)).

Conclusion

In conclusion, we report on the synthesis of dehydrovaline and dehydroisoleucine-containing oligopeptides as found in the peptide antibiotic myxovalargin using a C–N cross-coupling approach. Substantial optimization of the reaction conditions and the choice of the protecting group became necessary when the dehydrovaline-containing oligopeptide based on ornithine was synthesized. For the copper-mediated Buchwald C–N coupling reaction, (rac)-trans-N,N-dimethyl-1,2-cyclohexandiamine was the ligand of choice in combination with potassium carbonate as base. In our case, the usage of Boc and Teoc protection groups in the cross-coupling reaction gave the best results. By using the optimized reaction conditions the dehydroisoleucine peptide was synthesized without scrambling of stereochemistry. In summary, we showed that the C–N coupling reaction is a powerful tool to straight forwardly build-up of sterically hindered dehydroamino acid-containing peptide fragments.

Supporting Information

Supporting Information File 1: Syntheses and analytical descriptions of reagents and peptides and copies of 1H and 13C NMR spectra.
Format: PDF Size: 3.4 MB Download

Acknowledgements

We thank the Beilstein-Institut for generously supporting Franziska Gille with a Ph.D. scholarship.

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© 2016 Gille and Kirschning; licensee Beilstein-Institut.
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