[3 + 2] Cycloaddition of thioformylium methylide with various arylidene-azolones in the synthesis of 7-thia-3-azaspiro[4.4]nonan-4-ones

• Daniil I. Rudik,
• Irina V. Tiushina,
• Anatoly I. Sokolov,
• Alexander Yu. Smirnov,
• Alexander R. Romanenko,
• Alexander A. Korlyukov,
• Andrey A. Mikhaylov and
• Mikhail S. Baranov

Beilstein J. Org. Chem. 2025, 21, 1791–1798, doi:10.3762/bjoc.21.141

• thiohydantoin derivatives, since the initial compounds 2 had a predominant Z-configuration. At the same time, for cases 1, 3 and 4, both a synchronous and stepwise mechanism are possible. The discovered stereochemistry of the reaction correlates well with the previously obtained data, when the most

3,3'-Linked BINOL macrocycles: optimized synthesis of crown ethers featuring one or two BINOL units

• Somayyeh Kheirjou,
• Jan Riebe,
• Maike Thiele,
• Christoph Wölper and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2025, 21, 1719–1729, doi:10.3762/bjoc.21.134

• Unless otherwise stated, all BINOL derivatives were used as the (S)-enantiomers and the stereochemistry will not be mentioned further. Synthesis of macrocycles featuring one BINOL unit We first investigated the synthesis of crown ether-type macrocycles M1 which feature a single BINOL unit. Our previous

Approaches to stereoselective 1,1'-glycosylation

• Daniele Zucchetta and
• Alla Zamyatina

Beilstein J. Org. Chem. 2025, 21, 1700–1718, doi:10.3762/bjoc.21.133

• applications. The assembly of nonreducing 1,1′-linked disaccharides presents greater challenges than conventional chemical glycosylation due to the need for simultaneous control of stereochemistry at two anomeric centers. The structural complexity of natural biomolecules entailing 1,1′-disaccharides, which

• . The glycosylation reaction for forming nonreducing (1,1'-linked) disaccharides is inherently more complex than traditional glycosylation protocols, due to the importance of controlling the stereochemistry at two anomeric centers simultaneously. Consequently, the 1,1'-glycosylation reaction

Structural analysis of stereoselective galactose pyruvylation toward the synthesis of bacterial capsular polysaccharides

• Tsun-Yi Chiang,
• Mei-Huei Lin,
• Chun-Wei Chang,
• Jinq-Chyi Lee and
• Cheng-Chung Wang

Beilstein J. Org. Chem. 2025, 21, 1671–1677, doi:10.3762/bjoc.21.131

• biomolecules in organisms. However, the R/S stereochemistry of pyruvate ketal is difficult to control through chemical methods. In this study, the acid-labile pyruvate ketal linked to the 4- and 6-positions of galactose was cautiously constructed, and the X-ray analysis of the R-configured product was

• modifications of bacterial polysaccharides, and the interaction of 4,6-O-pyruvylated pyranoses with lectins depends on the stereochemistry of the pyruvate ketal. Moreover, this chemical modification is crucial, as the distinct R or S diastereochemistry at the ketal center directly influences its biological

• define the stereochemistry of pyruvate ketals as either R- or S-configurations. Typically, S-configuration exhibits 13C NMR shifts between δ 17–24 ppm and 1H NMR shifts δ 1.60–2.10 ppm, whereas the R-configuration shows 13C shifts downfield at δ 24-27 ppm and 1H shifts at δ 1.40–2.00 ppm [19][20][21][22

Synthesis of an aza[5]helicene-incorporated macrocyclic heteroarene via oxidation of an o-phenylene-pyrrole-thiophene icosamer

• Yusuke Matsuo,
• Aoi Nakagawa,
• Shu Seki and
• Takayuki Tanaka

Beilstein J. Org. Chem. 2025, 21, 1561–1567, doi:10.3762/bjoc.21.119

• ] and pyrenylenes [17][18] were reported to adopt unique chiral arrangements depending on their stereochemistry. Helical motifs such as carbo[4]helicene and oxa[5]helicene were incorporated into cyclic structures, giving rise to cyclic carbo[4]helicenylene A and cyclic oxa[5]helicenylene-biphenylene B

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• H-11 to C-10 (δC 173.5), H3-12 to C-9 (δC 128.1) and C-11 (δC 133.9). The relative stereochemistry of the double bond of the dehydrobutyrine moiety was established as Z based on a medium NOE correlation observed between the amide proton, H-8 (δH 9.82) and the methyl protons, H3-12 (see Figure 2 and

Recent advances in oxidative radical difunctionalization of N-arylacrylamides enabled by carbon radical reagents

• Jiangfei Chen,
• Yi-Lin Qu,
• Ming Yuan,
• Xiang-Mei Wu,
• Heng-Pei Jiang,
• Ying Fu and
• Shengrong Guo

Beilstein J. Org. Chem. 2025, 21, 1207–1271, doi:10.3762/bjoc.21.98

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• the correct stereochemistry of the newly formed three stereocenters. Additionally, replacing cesium carbonate with triethylamine proved crucial for achieving efficient asymmetric hydrogenation in this case. Subsequently, the carboxylic acid group of 57 was reduced with LiAlH4 in THF to produce primary

• stereochemistry (Scheme 11). A further two-carbon homologation of compound 76 through an oxidation and Wittig olefination sequence yielded unsaturated ester 77 in 92% yield. The ester group in 77 was reduced using DIBAL-H, achieving a 95% yield. Sharpless epoxidation of alcohol 78 was then performed using (−)-DET

• stereocenter, significantly reducing overall efficiency. To overcome this challenge, Laschat’s approach leveraged a chiral pool building block – methyl-branched preen gland wax ester – as the starting material. This ester already contained three methyl groups pre-installed with the stereochemistry necessary

Recent total synthesis of natural products leveraging a strategy of enamide cyclization

• Chun-Yu Mi,
• Jia-Yuan Zhai and
• Xiao-Ming Zhang

Beilstein J. Org. Chem. 2025, 21, 999–1009, doi:10.3762/bjoc.21.81

• . Optimization studies identified the tetraphenyl-substituted PyBox ligand L1 as particularly effective in controlling the stereochemistry of the polycyclization, yielding high enantioselectivity for most substrates. As illustrated in Scheme 5, tertiary enamides with a tethered electron-rich arene could undergo

Harnessing tethered nitreniums for diastereoselective amino-sulfonoxylation of alkenes

• Shyam Sathyamoorthi,
• Appasaheb K. Nirpal,
• Dnyaneshwar A. Gorve and
• Steven P. Kelley

Beilstein J. Org. Chem. 2025, 21, 947–954, doi:10.3762/bjoc.21.78

• diacetate was necessary for product formation (Table 3, products 20 and 25–28). X-ray crystallographic analysis of 20 (CCDC 2391529) allowed us to unambiguously determine its identity and relative stereochemistry, and we have assigned other products by analogy. A variety of carbamate substrates were

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Luc Van Meervelt,
• Do Thi Thao and
• Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

• a dihedral angle of 49.86(10) 86.22(11)° with the phenyl rings C6–C11 and C18–C23, respectively. The angle between both phenyl rings is 70.76(11)°. The stereochemistry around the double bond is Z, allowing an intramolecular N–H···O hydrogen bond between one of the carbonyl oxygen atoms and the amino

Origami with small molecules: exploiting the C–F bond as a conformational tool

• Patrick Ryan,
• Ramsha Iftikhar and
• Luke Hunter

Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54

• , conformations in which the two C–F bonds are aligned gauche will be favoured in water due to their high molecular dipole moment. A final layer of complexity is afforded by the stereochemistry of the 1,2-difluoroalkane motif: the various conformational factors described above will aggregate differently depending

• upon whether the 1,2-difluoro stereochemistry is threo or erythro. For example, the diastereoisomeric difluorinated stearic acids 14 and 15 (Figure 3) are found to have very different physical properties [28]. When deposited into a monolayer above a water phase, the threo-isomer 14 occupies a small

• emerges. The 1,3-C–F bonds tend to avoid a parallel alignment, due to dipolar repulsion (III, Figure 3) [30][31][32]. This phenomenon can be harnessed to control molecular conformations in a predictable way, and once again the stereochemistry is important. For example, compare the natural product

Recent advances in allylation of chiral secondary alkylcopper species

• Minjae Kim,
• Gwanggyun Kim,
• Doyoon Kim,
• Jun Hee Lee and
• Seung Hwan Cho

Beilstein J. Org. Chem. 2025, 21, 639–658, doi:10.3762/bjoc.21.51

• including s-BuLi, n-BuLi, and PhLi. The optimized protocol, employing CuCN as a catalyst, enabled efficient coupling between t-BuLi-activated complexes 10 and allylic halides 11, furnishing products 12 with complete retention of stereochemistry and high yields (Scheme 7). The method's versatility and

• phosphate. The absolute stereochemistry of the products was found to be consistent with that of previously reported CuH-catalyzed transformations using (S,S)-Ph-BPE (L1) as the supporting ligand, suggesting a common mode of stereoinduction. In parallel, Hoveyda and co-workers demonstrated the first copper

Formaldehyde surrogates in multicomponent reactions

• Cecilia I. Attorresi,
• Javier A. Ramírez and
• Bernhard Westermann

Beilstein J. Org. Chem. 2025, 21, 564–595, doi:10.3762/bjoc.21.45

• products are very appealing biologically relevant scaffolds due to their structural similarity to aminocarboxylic acids [80]. Moreover, the stereochemistry at the phosphorus center is conserved during the reaction. The reaction could also be performed with CH2Br2 and CH2I2 as the C1 building blocks and

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• glycochemists. The protecting building blocks on the glycosides contribute significantly in attaining the required stereochemistry of the resulting glycosides. Strategic installation of suitable protecting groups in the C-2 position, vicinal to the anomeric carbon, renders neighbouring group participation

• multistep synthesis of complex oligosaccharides and in turn, standardise the process of the glycosylation towards a particular stereochemical output. While neighbouring group participation has been quite effective in achieving the required stereochemistry of the produced glycosides, remote participation

• position as well as in a distal or remote position in the glycosyl donors, particularly concentrating on the works in the present millennium post 2000. Involvement of protecting groups in the near, proximal or vicinal position on the stereochemistry of the glycosylation reaction is termed as ‘neighbouring

Dioxazolones as electrophilic amide sources in copper-catalyzed and -mediated transformations

• Seungmin Lee,
• Minsuk Kim,
• Hyewon Han and
• Jongwoo Son

Beilstein J. Org. Chem. 2025, 21, 200–216, doi:10.3762/bjoc.21.12

• were tolerated, while a dioxazolone containing bromobenzene displayed lower reactivity (26c). The enamide 26d, derived from lobatamide, was successfully produced without altering the stereochemistry of the oxime ether. Terminal alkynes with linear alkyl group, protected alcohol, and sulfonamide

Non-covalent organocatalyzed enantioselective cyclization reactions of α,β-unsaturated imines

• Sergio Torres-Oya and
• Mercedes Zurro

Beilstein J. Org. Chem. 2024, 20, 3221–3255, doi:10.3762/bjoc.20.268

• to explain the stereochemistry of the product of the IEDADA reaction, the Si face of the azadiene should be attacked by the enecarbamate with endo selectivity, thus leading to the (4S,5R,6R)-cycloadduct 46. In 2019, as a follow-up work of their previous work, Masson and co-workers published a

Synthesis of extended fluorinated tripeptides based on the tetrahydropyridazine scaffold

• Thierry Milcent,
• Pascal Retailleau,
• Benoit Crousse and
• Sandrine Ongeri

Beilstein J. Org. Chem. 2024, 20, 3174–3181, doi:10.3762/bjoc.20.262

• analysis (Figure 5). Consequently, it was possible to assess the stereochemistry of the other diastereoisomer 8f’ and their precursors 7f and 7f’. On the other hand, considering the similarities of the 1H NMR spectra of the CF2H and CF3 analogs, by comparison, we could hypothesize the absolute

Hypervalent iodine-mediated intramolecular alkene halocyclisation

• Charu Bansal,
• Oliver Ruggles,
• Albert C. Rowett and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 3113–3133, doi:10.3762/bjoc.20.258

• . The authors studied the stereo-, regio, and chemoselectivity in both cyclic and acyclic substrates. It was observed that the use of acyclic iodane reagents 19 and 20 predominantly led to products with β-stereochemistry, whereas the cyclic iodanes 21 and 22 favour pathways leading to α-stereochemistry

• stereochemistry of the reaction. Linear chiral catalysts were found to offer higher stereoselectivity compared to spiro-catalysts. Under optimized conditions, the asymmetric aminofluorination of N-cinnamylbenzamides 37 using BF3·Et2O as the fluorine reagent demonstrated good yields and high stereoselectivity

• is then attacked by a nucleophile. The use of chiral iodine catalysts is essential for controlling the stereochemistry of the reaction. The specific arrangement of the catalyst influences the orientation of this nucleophilic attack as supported by density functional theory (DFT) calculations. In 2022

Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond

• Thomas Ma and
• John Chu

Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253

• The chemical structure of a molecule is defined as the arrangement of its atoms and bonds, which describes not just the size and shape of a molecule, but also encompass its stereochemistry, charges, polarity, functional groups, as well as the way these elements are spatially oriented. The chemical

• ., the type of alkylmalonate it incorporates into a growing PK intermediate [61]. Furthermore, Xiang et al. reported recently that the stereochemistry of each new chiral center resulting from each alkylmalonate BB incorporation can be predicted based on the corresponding ketoreductase domain sequence [83

gem-Difluorovinyl and trifluorovinyl Michael acceptors in the synthesis of α,β-unsaturated fluorinated and nonfluorinated amides

• Monika Bilska-Markowska,
• Marcin Kaźmierczak,
• Wojciech Jankowski and
• Marcin Hoffmann

Beilstein J. Org. Chem. 2024, 20, 2946–2953, doi:10.3762/bjoc.20.247

• E-isomer of products 9 were identified. The fluorine atom signals of 9a–d were located at approximately −112 ppm (triplets, J ≈ 27 Hz, Fβ) and at −155 to −159 ppm (multiplets, Fα). The stereochemistry was determined by 19F{1H} NMR spectroscopy. The observed coupling constants J ≈ 2 Hz between

• addition–elimination reaction, affording the corresponding fluorinated 13a–d (Scheme 4) and nonfluorinated 14a–d (Scheme 5) unsaturated products. Also this time, for compounds 13a–d, the formation of only Z isomers was observed (Scheme 4). The stereochemistry was determined by 19F{1H} NMR spectroscopy

Recent advances in transition-metal-free arylation reactions involving hypervalent iodine salts

• Ritu Mamgain,
• Kokila Sakthivel and
• Fateh V. Singh

Beilstein J. Org. Chem. 2024, 20, 2891–2920, doi:10.3762/bjoc.20.243

Access to optically active tetrafluoroethylenated amines based on [1,3]-proton shift reaction

• Yuta Kabumoto,
• Eiichiro Yoshimoto,
• Bing Xiaohuan,
• Masato Morita,
• Motohiro Yasui,
• Shigeyuki Yamada and
• Tsutomu Konno

Beilstein J. Org. Chem. 2024, 20, 2776–2783, doi:10.3762/bjoc.20.233

• the NOESY spectrum of the imine (R)-16c, the stereochemistry of the imines (R)-16 was determined as E [36]. Among the imines thus obtained, (R)-16b was used to investigate the optimum reaction conditions (Table 1). Treatment of (R)-16b with 1.2 equiv of DBU (1,8-diazabicyclo[5.4.0]undec-7-ene) in THF

Computational design for enantioselective CO₂ capture: asymmetric frustrated Lewis pairs in epoxide transformations

• Maxime Ferrer,
• Iñigo Iribarren,
• Tim Renningholtz,
• Ibon Alkorta and
• Cristina Trujillo

Beilstein J. Org. Chem. 2024, 20, 2668–2681, doi:10.3762/bjoc.20.224

• an in silico approach to design asymmetric frustrated Lewis pairs (FLPs) aimed at controlling reaction stereochemistry. Four FLP scaffolds, incorporating diverse Lewis acids (LA), Lewis bases (LB), and substituents, were assessed via volcano plot analysis to identify the most promising catalysts. By

• distance between the CH3 group in the catalyst and the epoxy carbon atom (3.45 Å vs 3.75 Å in TS_S_S), a steric clash between the two methyl groups occurs (Figure 9). This results in an inversion of stereochemistry via rotation of the epoxy C–C bond, leading to the formation of the (R) product. As two TSs

• pairs tailored specifically to control the stereochemistry of the CO2 insertion reaction. Computational evaluations of four distinct FLP scaffolds, incorporating various Lewis acids, Lewis bases, and substituents, identify the most promising catalyst candidates through volcano plot analysis. The volcano

Facile preparation of fluorine-containing 2,3-epoxypropanoates and their epoxy ring-opening reactions with various nucleophiles

• Yutaro Miyashita,
• Sae Someya,
• Tomoko Kawasaki-Takasuka,
• Tomohiro Agou and
• Takashi Yamazaki

Beilstein J. Org. Chem. 2024, 20, 2421–2433, doi:10.3762/bjoc.20.206

• is the high regio- and stereoselectivities of its epoxy ring opening specifically occurring at the 2 position in an SN2 manner, when it is treated with appropriate nucleophiles (Nu), leading to the formation of the 2-substituted 3-hydroxyesters with 2,3-anti stereochemistry. These characteristic

• t-BuO2Li reagent [31], we speculated that NaClO·5H2O would similarly work for the corresponding Z-1 with retention of stereochemistry. The procedure found here was also applied to the three representative CF3-containing α,β-unsaturated esters,1h–j [42] with different substitution patterns (Scheme 2

• 2 were recognized as versatile building blocks for the construction of 2-amino-3-hydroxypropanoates with 2,3-anti stereochemistry, if appropriate amines work nicely in a nucleophilic manner [44]. After the brief optimization of the conditions for the reaction of 2b and p-anisidine, good yields with