Research towards selective inhibition of the CLK3 kinase

• Vinay Kumar Singh,
• Frédéric Justaud,
• Dabbugoddu Brahmaiah,
• Nangunoori Sampath Kumar,
• Blandine Baratte,
• Thomas Robert,
• Stéphane Bach,
• Chada Raji Reddy,
• Nicolas Levoin and
• René L. Grée

Beilstein J. Org. Chem. 2025, 21, 2250–2259, doi:10.3762/bjoc.21.172

• kinase activities are expressed in % of maximal activity, i.e., measured in the absence of inhibitor but with an equivalent dose of DMSO (solvent of the tested compounds). ATP concentration used in the kinase assays was 10 µM (values are means, n = 2). Kinases are from human origin (Homo sapiens) except

Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates

• Gyöngyvér Pusztai,
• László Poszávácz,
• Anna Vincze,
• András Marton,
• Ahmed Qasim Abdulhussein,
• Judit Halász,
• András Dancsó,
• Gyula Simig,
• György Tibor Balogh and
• Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169

• Table 3. The preliminary ADME investigation, characterized by first-order kinetics due to low substrate concentration (≤10 µM), aids in establishing intrinsic clearance (Clint), which indicates the predicted elimination efficacy of drugs [43]. According to the generally accepted Clint ≈ 10 μL/min/kg (or

• KGaA, Darmstadt, Germany), adjusting the pH with HCl. Water for buffer and eluent preparation were provided by a Millipore Milli-Q water purification system. Kinetic aqueous solubility assay. All compounds were dissolved in DMSO to make stock solutions at 10 mM concentration. In the case of 7i, 7j, and

• (E)-9b, the highest concentration achieved in DMSO was 0.5 mM, while for (E)-9a it was 1 mM (DMSO solubility results of the compounds can be found in Supporting Information File 1). 5 μL of the stock solutions was pipetted into a 96-well plate containing 495 μL PBS (pH 6.5) in each well to achieve

C2 to C6 biobased carbonyl platforms for fine chemistry

• Jingjing Jiang,
• Muhammad Noman Haider Tariq,
• Florence Popowycz,
• Yanlong Gu and
• Yves Queneau

Beilstein J. Org. Chem. 2025, 21, 2103–2172, doi:10.3762/bjoc.21.165

• acid (ALA), and benzylic acid (BA). These acids were oxidized and gave formaldehyde, acetaldehyde, acetone, benzaldehyde, acetophenone, and benzophenone, respectively. By increasing pH and concentration, the rate of the reactions increased, but decreased upon increasing the amount of Cl− ions (Scheme

Aryl iodane-induced cascade arylation–1,2-silyl shift–heterocyclization of propargylsilanes under copper catalysis

• Rasma Kroņkalne,
• Rūdolfs Beļaunieks,
• Armands Sebris,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2025, 21, 1984–1994, doi:10.3762/bjoc.21.154

• and 17). The obtained diene 10a contained 13–15% of silylindene 11a as impurity. Products 10a and 11a are separable by preparative HPLC. Lowering the starting material concentration in the reaction mixture to 0.05 mmol/mL significantly decreased the diene 10a yield due to the formation of other

• in the context of 1,2-silyl shift and potential cyclization. Competing mechanistic pathways for diene 10 and indene 11 formation. Reaction scope for the synthesis of arylated tetrahydrofurans 8. Conditions: All reactions were performed on a 0.47 mmol scale. aStarting material 7d concentration: 0.1

Photochemical reduction of acylimidazolium salts

• Michael Jakob,
• Nick Bechler,
• Hassan Abdelwahab,
• Fabian Weber,
• Janos Wasternack,
• Leonardo Kleebauer,
• Jan P. Götze and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2025, 21, 1973–1983, doi:10.3762/bjoc.21.153

• followed by 1H NMR over the course of 48 h. As shown in Figure 3, at the start of the reaction, rapid consumption of the benzoylazolium starting material was observed with concomitant formation of O-benzoylated product 3. The concentration of this species then slowly decreased over the remaining reaction

Rhodium-catalysed connective synthesis of diverse reactive probes bearing S(VI) electrophilic warheads

• Scott Rice,
• Julian Chesti,
• William R. T. Mosedale,
• Megan H. Wright,
• Stephen P. Marsden,
• Terry K. Smith and
• Adam Nelson

Beilstein J. Org. Chem. 2025, 21, 1924–1931, doi:10.3762/bjoc.21.150

• products were obtained (see Figure 3 and Table 2). The marked improvement in product yields, compared to those observed with D1–3, may reflect the change to the workflow, i.e., variation in stock concentration to improve solubility. The diversity of the obtained products was increased by the multiple

Synthesis of N-doped chiral macrocycles by regioselective palladium-catalyzed arylation

• Shuhai Qiu and
• Junzhi Liu

Beilstein J. Org. Chem. 2025, 21, 1917–1923, doi:10.3762/bjoc.21.149

• (c) MC3. (d) Molecular arrangements of MC3. Hydrogen atoms are omitted for clarity. (a) Absorptions and (b) emissions of compounds 3a, 3b, MC1, MC2, and MC3 measured in dichloromethane at room temperature. The inset shows the photographs under UV light at 365 nm. The concentration is 10 μM

Synthesis, biological and electrochemical evaluation of glycidyl esters of phosphorus acids as potential anticancer drugs

• Almaz A. Zagidullin,
• Emil R. Bulatov,
• Mikhail N. Khrizanforov,
• Damir R. Davletshin,
• Elvina M. Gilyazova,
• Ivan A. Strelkov and
• Vasily A. Miluykov

Beilstein J. Org. Chem. 2025, 21, 1909–1916, doi:10.3762/bjoc.21.148

• glycidyl esters of phosphorus acids 1–3, their cytotoxic effects were assessed using the MTT assay on two tumor cell lines (PC-3 and MCF7) and one non-cancerous line (HSF). The assay measures the concentration of each compound required to inhibit cellular metabolic activity by 50% (IC50). All experiments

• dissolving the compounds in the culture medium to a final concentration of 25 mM. These stock solutions were stored and used for subsequent treatments. Cell treatment. 24 hours after seeding, cells were treated with the test compounds at final concentrations of 25 μM, 50 μM, 100 μM, 250 μM, 500 μM, 750 μM

• , 1,000 μM, 2,500 μM, and 5,000 μM. Each concentration was tested in triplicate. Control wells received an equivalent volume of culture medium without compounds and served as untreated negative controls. Cytotoxicity analysis of compounds. After 48 hours of treatment, MTT reagent was added to each well at

Stereoselective electrochemical intramolecular imino-pinacol reaction: a straightforward entry to enantiopure piperazines

• Margherita Gazzotti,
• Fabrizio Medici,
• Valerio Chiroli,
• Laura Raimondi,
• Sergio Rossi and
• Maurizio Benaglia

Beilstein J. Org. Chem. 2025, 21, 1897–1908, doi:10.3762/bjoc.21.147

• . Doubling the substrate concentration (Table 1, entry 7) also failed to provide a significant advantage in terms of yield, leading to the formation of the desired product in 64% yield. The replacement of both working cathode and counter anode to stainless steel electrodes caused a decrement of the yield to

Photoswitches beyond azobenzene: a beginner’s guide

• Michela Marcon,
• Christoph Haag and
• Burkhard König

Beilstein J. Org. Chem. 2025, 21, 1808–1853, doi:10.3762/bjoc.21.143

• excitation depends on the molar extinction ε of each isomer. It is the absorbance A normalised by the concentration c and the path length l, calculated according to the Beer–Lambert law: For this reason, careful choice of the excitation wavelength is important, as it affects how well one isomer can be

• of the metastable isomer [5][6][7], thus they are also important factors to consider when choosing the solvent and the concentration of the solution. The half-life can be extrapolated by monitoring the photoswitch in the metastable form over time by various spectroscopic methods (UV–vis, NMR) in the

• tautomerism is an intermolecular process that depends not only on the choice of aryl rings and substituents but also on concentration, solvent polarity, and the presence of proton sources [5][15]. In conclusion, the choice of aryl rings, substituents, and substitution position are all crucial to determine the

Research progress on calixarene/pillararene-based controlled drug release systems

• Liu-Huan Yi,
• Jian Qin,
• Si-Ran Lu,
• Liu-Pan Yang,
• Li-Li Wang and
• Huan Yao

Beilstein J. Org. Chem. 2025, 21, 1757–1785, doi:10.3762/bjoc.21.139

• efficacy [2][3][4]. Nowadays, there are technologies that can better confine the action of drugs to where they are needed. Drug delivery is a technology that administers drugs to patients, which can specifically increase the concentration of drugs in certain parts of the body, thereby enhancing the

• nanoparticles [62]. Their morphologies mainly depend on molecular structure, concentration, and environmental properties. The cylindrical geometry of vesicles [63] promotes the arrangement of amphiphilic molecules with their hydrophobic tails pointing inward and hydrophilic heads pointing outward, forming a

• length of the alkyl chain, and the nature of the polar head group [71]. Compared with traditional surfactants, amphiphilic CAs have a lower critical micelle concentration and are more likely to self-assemble into various forms of aggregates, such as spherical micelles [72], vesicles, and spherical

Convenient alternative synthesis of the Malassezia-derived virulence factor malassezione and related compounds

• Karu Ramesh and
• Stephen L. Bearne

Beilstein J. Org. Chem. 2025, 21, 1730–1736, doi:10.3762/bjoc.21.135

• . Concentration under reduced pressure refers to the removal of solvent using a rotary evaporator, unless stated otherwise. All NMR spectra were obtained using a Bruker ASCEND 400 MHz spectrometer at the Nuclear Magnetic Resonance Research Resource (NMR-3, Dalhousie University). Chemical shifts (δ in ppm) for

Continuous-flow-enabled intensification in nitration processes: a review of technological developments and practical applications over the past decade

• Feng Zhou,
• Chuansong Duanmu,
• Yanxing Li,
• Jin Li,
• Haiqing Xu,
• Pan Wang and
• Kai Zhu

Beilstein J. Org. Chem. 2025, 21, 1678–1699, doi:10.3762/bjoc.21.132

• solvent and source of the active electrophilic NO2+ species. The attack of NO2+ on the nitration substrates is the rate-determining step in the nitration reaction. Therefore, the effect of sulfuric acid concentration on the nitration reaction must be considered to obtain intrinsic kinetic data, which is

• analysis can be obtained from the Mc function-correlated rate equation. The linearized equation requires prior determination of two key parameters: (i) the acidity function Mc and (ii) the concentration ratio of , to resolve the values of k* and n. According to the works of Marziano et al. [64][65][66

• ], quantitative correlations between the Mc function and both sulfuric acid concentration and temperature could be established. The values of are governed by both temperature and sulfuric acid concentration. The experimental determination of across varying temperature and H2SO4 concentrations has been widely

Synthesis of optically active folded cyclic dimers and trimers

• Ena Kumamoto,
• Kana Ogawa,
• Kazunori Okamoto and
• Yasuhiro Morisaki

Beilstein J. Org. Chem. 2025, 21, 1603–1612, doi:10.3762/bjoc.21.124

• diiodobenzene 5 using a Pd2(dba)3/PPh3/CuI catalytic system in toluene and Et3N under diluted conditions (monomer concentration = approximately 1.3 × 10−3 M) was performed. The corresponding cyclic dimer (Sp)-6 and trimer (Sp)-7 were detected mainly by thin-layer chromatography (TLC) and separated roughly using

• lifetime measurement was performed on a Hamamatsu Photonics Quantaurus-Tau fluorescence lifetime spectrometer system. Specific rotations ([α]Dt) were measured with a HORIBA SEPA-500 polarimeter: concentration “c” is g/dL. Circular dichroism (CD) spectra were recorded on a JASCO J-1500 spectropolarimeter

Facile synthesis of hydantoin/1,2,4-oxadiazoline spiro-compounds via 1,3-dipolar cycloaddition of nitrile oxides to 5-iminohydantoins

• Juliana V. Petrova,
• Varvara T. Tkachenko,
• Victor A. Tafeenko,
• Anna S. Pestretsova,
• Vadim S. Pokrovsky,
• Maxim E. Kukushkin and
• Elena K. Beloglazkina

Beilstein J. Org. Chem. 2025, 21, 1552–1560, doi:10.3762/bjoc.21.118

• ]. The most dramatic discrepancy in spiro-compound yields was observed during the reaction with this nitrile oxide, suggesting that classical conditions (low temperature and inert atmosphere) may prove more fruitful in preventing the degradation of the dipole. The influence of the concentration of the

• 96-well culture plates at a concentration of 4–7 × 103 cells/mL and incubated at 37 °C for 24 hours. The cells were counted after treatment with trypan blue solution (0.4%) in a Goryaev chamber. Then, after incubation at 37 °C for 72 h, the cells were exposed to various concentrations of the studied

Azide–alkyne cycloaddition (click) reaction in biomass-derived solvent Cyrene^TM under one-pot conditions

• Zoltán Medgyesi and
• László T. Mika

Beilstein J. Org. Chem. 2025, 21, 1544–1551, doi:10.3762/bjoc.21.117

• of volatile compounds from the aqueous phase by vacuum distillation, 88% of CyreneTM (13.7 g) was recovered. The reaction was repeated four times with the same procedure under identical conditions (same catalyst and substrate concentration). It was shown that CyreneTM could be successfully recovered

General method for the synthesis of enaminones via photocatalysis

• Paula Pérez-Ramos,
• Raquel G. Soengas and
• Humberto Rodríguez-Solla

Beilstein J. Org. Chem. 2025, 21, 1535–1543, doi:10.3762/bjoc.21.116

• , the rate of the reaction is independent of the concentration of the 3-bromochromone substrate 7a and amine 8a (Figure S4, Supporting Information File 1). Based on the above experiments and prior work on the photocatalytic reductive halogenation using acridinium photocatalysts [45][46], a possible

Azobenzene protonation as a tool for temperature sensing

• Antti Siiskonen,
• Sami Vesamäki and
• Arri Priimagi

Beilstein J. Org. Chem. 2025, 21, 1528–1534, doi:10.3762/bjoc.21.115

• change from pale yellow to bright red. Since the protonated 3 shows minimal absorption between 300–400 nm (Figure 1B), the degree of protonation can be estimated by comparing the absorbance at 358 nm (neutral) and 502 nm (protonated). As the degree of protonation and initial concentration are known, the

• determined using Equation 2. If the stoichiometry is correct, the calculated ∆G° values should not depend on the initial acid concentration. We considered options where 3 forms ion pairs with one, two or three MSA molecules in DCE. The ∆G° values were calculated at three temperatures (15, 25, and 50 °C) for

• nine acid concentrations ([MSA]0 = 154–3080 µM, or 10–200 ppm; see Tables S1–S9 in Supporting Information File 1). For one or three acid molecules (n = 1 or 3), the ∆G° values varied with the initial acid concentration, indicating incorrect stoichiometry. However, for n = 2, constant ∆G° values were

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Marcin Palusiak,
• Heinz Heimgartner,
• Marta Denel-Bobrowska and
• Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

• by MTT assay and expressed as CC50 parameter (50% cytotoxic concentration) [32]. All results are gathered in Table 2. In general, the tested compounds did not demonstrate high levels of toxicity towards the investigated non-cancer cell lines. Among them, Vero cells showed the highest sensitivity

• (for synthesis of 4b,c, and 4e, see ref. [15]). The solution of diazomethane (CH2N2) in pentane was prepared without distillation and determination of the concentration following a procedure described in an earlier publication [28]. Preparation of 2c as a new precursor of thiocarbonyl S-methanide 1c

Highly distinguishable isomeric states of a tripodal arylazopyrazole derivative on graphite through electron/hole-induced switching at ambient conditions

• Himani Malik,
• Sudha Devi,
• Debapriya Gupta,
• Ankit Kumar Gaur,
• Sugumar Venkataramani and
• Thiruvancheril G. Gopakumar

Beilstein J. Org. Chem. 2025, 21, 1496–1507, doi:10.3762/bjoc.21.112

• accommodate ≈200 Tbits in a 1 cm2 area. Experimental Preparation of adlayer The FNAAP molecule is synthesized as per our previous report [29]. Ultra-thin films were prepared by drop casting from ethanolic solutions of molecules (concentration between 10−5 to 10−6 M) on freshly cleaved highly oriented

Photoredox-catalyzed arylation of isonitriles by diaryliodonium salts towards benzamides

• Nadezhda M. Metalnikova,
• Nikita S. Antonkin,
• Tuan K. Nguyen,
• Natalia S. Soldatova,
• Alexander V. Nyuchev,
• Mikhail A. Kinzhalov and
• Pavel S. Postnikov

Beilstein J. Org. Chem. 2025, 21, 1480–1488, doi:10.3762/bjoc.21.110

• photochemical reactions such as the reagents concentrations and ratio. Surprisingly, both dilution of the reaction mixture to 0.05 M and concentration to 0.2 M led to reduced yields (Table 1, entries 12 and 13) compared to the optimal concentration of 0.1 M. Furthermore, the yield of 2aa exhibited minimal

Tautomerism and switching in 7-hydroxy-8-(azophenyl)quinoline and similar compounds

• Lidia Zaharieva,
• Vera Deneva,
• Fadhil S. Kamounah,
• Nikolay Vassilev,
• Ivan Angelov,
• Michael Pittelkow and
• Liudmil Antonov

Beilstein J. Org. Chem. 2025, 21, 1404–1421, doi:10.3762/bjoc.21.105

• crystal was used and the samples were scanned 128 times. The UV–vis spectra were measured on a Jasco V-570 UV–vis–NIR spectrophotometer using spectral grade solvents in the concentration range ≈10−5 mol/L. The steady-state fluorescence spectra were recorded with a FluoroLog 3-22 (HORIBA

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• show modest activity against L. major. All the remaining compounds (1–3 and 5–7) tested in this assay showed no activity at the highest concentration very likely due to the free carboxylic acid moiety present in some compounds (1, 3 and 7), prevent uptake into the parasites. This could also explain the

Oxetanes: formation, reactivity and total syntheses of natural products

• Peter Gabko,
• Martin Kalník and
• Maroš Bella

Beilstein J. Org. Chem. 2025, 21, 1324–1373, doi:10.3762/bjoc.21.101

Recent advances and future challenges in the bottom-up synthesis of azulene-embedded nanographenes

• Bartłomiej Pigulski

Beilstein J. Org. Chem. 2025, 21, 1272–1305, doi:10.3762/bjoc.21.99

• regioselective functionalization at the periphery of the PAHs. Besides triflyloxylation (42, 43), the introduction of one or two dichlorovinylene groups (43, 44) was observed. As in previous cases, the exact ratio of the products depended on the amount of DDQ and concentration of the precursor. Analysis of NICS