C2 to C6 biobased carbonyl platforms for fine chemistry

• Jingjing Jiang,
• Muhammad Noman Haider Tariq,
• Florence Popowycz,
• Yanlong Gu and
• Yves Queneau

Beilstein J. Org. Chem. 2025, 21, 2103–2172, doi:10.3762/bjoc.21.165

• protonated forms (Scheme 40). HFO can be hydrolyzed to succinic acid, however, it is a slow process in aqueous solution. In NaOH solution at pH 9–10, a complete conversion of HFO to succinic acid is rapidly achieved (Scheme 41) [126]. Substitution and condensation reactions of HFO (crude from furfural

The application of desymmetric enantioselective reduction of cyclic 1,3-dicarbonyl compounds in the total synthesis of terpenoid and alkaloid natural products

• Dong-Xing Tan and
• Fu-She Han

Beilstein J. Org. Chem. 2025, 21, 2085–2102, doi:10.3762/bjoc.21.164

• 77 and subsequent deprotection produced tertiary alcohol 78. Starting from this common intermediate, on the one hand, through successive manipulations by diazotization and in situ azide substitution, AgNO3-mediated aza-Cope/Mannich [62] reaction delivered ketone 79. Subsequently, a three-step

• and in situ allylic substitution with MeOH produced [3.2.1] bridged ring product 117, which was transformed into ketone 118 via nine functional group manipulations. Finally, by employing the same reaction procedures as those utilized in the total synthesis of (−)-platensilin (23), the authors

Discovery of cytotoxic indolo[1,2-c]quinazoline derivatives through scaffold-based design

• Daniil V. Khabarov,
• Valeria A. Litvinova,
• Lyubov G. Dezhenkova,
• Dmitry N. Kaluzhny,
• Alexander S. Tikhomirov and
• Andrey E. Shchekotikhin

Beilstein J. Org. Chem. 2025, 21, 2062–2071, doi:10.3762/bjoc.21.161

• ]. Given the presence of the indole moiety in indolo[1,2-c]quinazolin-6(5H)-one (1), the design of novel gramine-like analogues via aminomethyl substitution at position 12 is feasible. To evaluate the influence of the urea carbonyl group on biological activity, a modified scaffold, 6-methylindolo[1,2-c

• ]quinazoline (8) [26], was also used in which the carbonyl oxygen at position 6 is replaced by a methyl group. Substitution at position C6 will enable to investigate the influence of electronic and steric changes for target affinity, while retaining the key pharmacophoric features of the indoloquinazolinone

• substitution of the terminal chloride in 11 with various cyclic amines, including pyrrolidine, piperidine, and mono-tert-butoxycarbonyl (Boc)-protected piperazine, provided a set of aminoalkyl derivatives 12а–с (Scheme 4). This strategy enables the expansion of structural diversity within this scaffold and

Understanding the origin of stereoselectivity in the photochemical denitrogenation of 2,3-diazabicyclo[2.2.1]heptene and its derivatives with non-adiabatic molecular dynamics

• Leticia A. Gomes and
• Steven A. Lopez

Beilstein J. Org. Chem. 2025, 21, 2007–2020, doi:10.3762/bjoc.21.156

• housane. From the equatorial DZ (eq-DZ in Scheme 3), the inverted housane can be formed through a homolytic substitution (SH2) process or can be formed via a planar DR (pl-DR in Scheme 3) radical which affords retained and inverted housane [82]. In 2020, Rollins and co-workers also investigated the

Measuring the stereogenic remoteness in non-central chirality: a stereocontrol connectivity index for asymmetric reactions

• Ivan Keng Wee On,
• Yu Kun Choo,
• Sambhav Baid and
• Ye Zhu

Beilstein J. Org. Chem. 2025, 21, 1995–2006, doi:10.3762/bjoc.21.155

• coupling of biaryls is designated as [30 20]. In addition to biaryls, axially chiral allenes are popular targets for asymmetric synthesis. Three examples of asymmetric reactions that form axially chiral allenes are shown in Scheme 4. For example, the enantioselective nucleophilic substitution to yield

Enantioselective desymmetrization strategy of prochiral 1,3-diols in natural product synthesis

• Lihua Wei,
• Rui Yang,
• Zhifeng Shi and
• Zhiqiang Ma

Beilstein J. Org. Chem. 2025, 21, 1932–1963, doi:10.3762/bjoc.21.151

• favored complexation, while the phenyl substitution at C4 promoted a stable coordination-bond formation. Alternatively, (S)-130 could be furnished using Cu complex 129 in the desymmetrization step with comparable efficiency (98% yield and 91% ee), and was likewise transformed into 131 in four steps

• diol 158, the ligand with only isopropyl substitution at C4 proved effective with suitable size for the substrate–catalyst coordination. A subsequent two-step sequence enabled the sythesis of olefinic carbamate 161 from benzoate 160. Treatment of 161 with Hg(CF3CO2)2 induced mercuriocyclization

• , affording monobenzoate 169 in 97% yield with 96% ee. For 2-alkyl-substituted glycerols like triol 167, complex 168 is the most efficient catalyst as the BOX ligand with a benzyl substitution at C4 provided an appropriate size for the catalyst–substrate coordination [58]. The intermediate 169 was transformed

Chiral phosphoric acid-catalyzed asymmetric synthesis of helically chiral, planarly chiral and inherently chiral molecules

• Wei Liu and
• Xiaoyu Yang

Beilstein J. Org. Chem. 2025, 21, 1864–1889, doi:10.3762/bjoc.21.145

• good yield and excellent enantioselectivity (Scheme 5). Notably, two distinct oxidative aromatization methods have been developed to yield diverse heterohelicene products. For instance, using DDQ as an oxidant selectively delivered hetero[7]helicenes 19 with monoamido substitution at the peri-positions

• , while utilizing MnO2 as an oxidant selectively yielded heterohelicenes 20 with bisamido substitution at the peri-positions. In 2024, Zhou, Chen and co-workers disclosed an efficient method for the asymmetric synthesis of indolohelicenoids through a sequential enantioselective annulation, followed by an

• the 1,3-phenyl rings (see 53d) or 1,3-diamino substitution (see 53e) on the calix[4]arene scaffold were also amenable to this method, which yielded a series of structurally diverse novel quinoline-containing inherently chiral calix[4]arenes. Moreover, by using CPA 4 as the optimal catalyst, the

Systematic pore lipophilization to enhance the efficiency of an amine-based MOF catalyst in the solvent-free Knoevenagel reaction

• Pricilla Matseketsa,
• Margret Kumbirayi Ruwimbo Pagare and
• Tendai Gadzikwa

Beilstein J. Org. Chem. 2025, 21, 1854–1863, doi:10.3762/bjoc.21.144

• substitution, to isopropyl, then tert-butyl, subsequent increases in lipophilicity with n-hexyl and tetradecyl resulted in decreased conversions; a trend that can be more clearly perceived in Figure 4A. The combined dodecane-free results led us to speculate that it would be better to remove solvent as a

Photoswitches beyond azobenzene: a beginner’s guide

• Michela Marcon,
• Christoph Haag and
• Burkhard König

Beilstein J. Org. Chem. 2025, 21, 1808–1853, doi:10.3762/bjoc.21.143

• ). Shining light will bring the molecule to a generic excited state (which is different for different photoswitch classes and substitution patterns and will not be treated in detail), which can then relax back to the ground state in either of the two wells. In cases where the two absorption spectra of the

• the time within 50% of the metastable isomer is thermally converted to the stable one [3]. It depends on the photoswitch class, solvent, substitution pattern, and temperature. For some photoswitch classes, proton exchange and intramolecular hydrogen bonds are known to accelerate the thermal relaxation

• Azoheteroarenes are azoswitches of which at least one aromatic ring is a heteroarene (Figure 3). The variety of heterocycles and substitution patterns that can be used gives rise to a considerable number of variants covering all the UV and visible spectrum and with thermal Z-isomer lifetimes that span from

Thermodynamics and polarity-driven properties of fluorinated cyclopropanes

• Matheus P. Freitas

Beilstein J. Org. Chem. 2025, 21, 1742–1747, doi:10.3762/bjoc.21.137

• substitution is endothermic and, therefore, destabilizing [8]. This destabilization was attributed to the greater s-character of the orbital involved in bonding to the substituent. In contrast, our calculations at the B3LYP-GD3BJ/6-311++G(d,p) level revealed that the reactions leading to the fluorinated

3,3'-Linked BINOL macrocycles: optimized synthesis of crown ethers featuring one or two BINOL units

• Somayyeh Kheirjou,
• Jan Riebe,
• Maike Thiele,
• Christoph Wölper and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2025, 21, 1719–1729, doi:10.3762/bjoc.21.134

• ]. For the synthesis of macrocycles M2 with two BINOL units, we relied on the monoiodide 12, which was first reacted in a two-fold Suzuki coupling to install the first linker, followed by silyl deprotection and introduction of the second linker via nucleophilic substitution [51]. Both procedures require

• . Yields for the macrocyclization step depended strongly on ring size and substitution pattern and ranged from 11–74%. Second, we could use Me/H/iPr-2 as starting materials for bis-BINOL macrocycles. Attachment of ethylene glycol chains with suitable leaving groups (tosylate or chloride), followed by

Continuous-flow-enabled intensification in nitration processes: a review of technological developments and practical applications over the past decade

• Feng Zhou,
• Chuansong Duanmu,
• Yanxing Li,
• Jin Li,
• Haiqing Xu,
• Pan Wang and
• Kai Zhu

Beilstein J. Org. Chem. 2025, 21, 1678–1699, doi:10.3762/bjoc.21.132

• aliphatic counterparts) due to their predictable electrophilic substitution mechanisms and relatively mild reaction conditions, which enable superior controllability and regioselectivity. Unlike aromatic nitrations that predominantly follow ionic mechanisms, aliphatic systems governed by free radical

• •NO2 radical substitution mechanism during the HNO3-mediated nitration of arylboronic acids, providing mechanistic justification for this synthetically valuable transformation [58]. Parallel evidence came from Plouffe and colleagues microreactor studies on salicylic acid nitration, where kinetics

• dehydration. This electrophilic species subsequently engages in an aromatic electrophilic substitution, with reaction kinetics heavily influenced by the electronic nature of substituents and acid strength. Table 2 analyzes studies in the literature that utilize the flow-chemistry technology to investigate the

Structural analysis of stereoselective galactose pyruvylation toward the synthesis of bacterial capsular polysaccharides

• Tsun-Yi Chiang,
• Mei-Huei Lin,
• Chun-Wei Chang,
• Jinq-Chyi Lee and
• Cheng-Chung Wang

Beilstein J. Org. Chem. 2025, 21, 1671–1677, doi:10.3762/bjoc.21.131

• the foundational work of Kulkarni, Codée, Boons, and other outstanding groups in their studies on zwitterionic polysaccharides [7][8][9][10][11][12]. Pyruvylation of carbohydrate diols is commonly achieved through acetal substitution in the presence of acid during chemical synthesis. In this process

3-Aryl-2H-azirines as annulation reagents in the Ni(II)-catalyzed synthesis of 1H-benzo[4,5]thieno[3,2-b]pyrroles

• Julia I. Pavlenko,
• Pavel A. Sakharov,
• Anastasiya V. Agafonova,
• Derenik A. Isadzhanyan,
• Alexander F. Khlebnikov and
• Mikhail S. Novikov

Beilstein J. Org. Chem. 2025, 21, 1595–1602, doi:10.3762/bjoc.21.123

• 3-aryl-2H-azirines with different substitution patterns of the aryl group (Scheme 2). As the presented data show, the reaction is insensitive to the electronic effects of substituents in the aryl group and, in the majority of cases, gives very high yields of annulation products. The introduction of

Thermodynamic equilibrium between locally excited and charge transfer states in perylene–phenothiazine dyads

• Issei Fukunaga,
• Shunsuke Kobashi,
• Yuki Nagai,
• Hiroki Horita,
• Hiromitsu Maeda and
• Yoichi Kobayashi

Beilstein J. Org. Chem. 2025, 21, 1577–1586, doi:10.3762/bjoc.21.121

• than that of the LE band of the Pe moiety in other compounds. This suggests that the phenyl spacer effectively suppressed the CT interaction. It is noted that the substitution of the TPA group increases the relative amplitude of the CT emission band. On the other hand, it was found that the intensity

• absorption spectra and dynamics observed were generally similar to those of Pe–PTZ(TPA)2 (Supporting Information File 1, Figure S29c). However, the broad band between 700–800 nm is split into two peaks at 720 and 790 nm, likely due to asymmetric substitution of a single TPA group. The time constants of

pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

• Ryota Kimura,
• Satoshi Ichikawa and
• Akira Katsuyama

Beilstein J. Org. Chem. 2025, 21, 1568–1576, doi:10.3762/bjoc.21.120

• substitution of an ortho-disubstituted benzamide (DiBA) increases the rotational barrier of the C–N and C–N/C–C concerted rotation (Figure 1a,b) [20]. The observation can be explained mainly by the double-bond nature of the chalcogen amide C–N bond, which is attributed to a zwitterionic resonance structure of

• formal substitution of the carbonyl oxygen atom of DiBA to an NH group, could act as a pH-responsive molecular switch (Figure 1c). Namely, the double-bond nature of an amidine moiety can be altered by the protonation of the amidine nitrogen atom. This suggests the possibility of controlling the rate of C

• usefulness of the single-atom substitution strategy on DiBA. By replacing the oxygen atom of DiBA with a nitrogen atom (and thus NH), which has been shown to be photo-responsive when replaced with sulfur or selenium, the pH-responsive property was acquired. Such minimal changes in physical properties can be

Facile synthesis of hydantoin/1,2,4-oxadiazoline spiro-compounds via 1,3-dipolar cycloaddition of nitrile oxides to 5-iminohydantoins

• Juliana V. Petrova,
• Varvara T. Tkachenko,
• Victor A. Tafeenko,
• Anna S. Pestretsova,
• Vadim S. Pokrovsky,
• Maxim E. Kukushkin and
• Elena K. Beloglazkina

Beilstein J. Org. Chem. 2025, 21, 1552–1560, doi:10.3762/bjoc.21.118

• (Figure 3b, red ring) than 4-NO2 or 4-Cl substituents (IC50 of 5h was lower than 5l and 5f). The presence of a methoxy group in the imine aromatic core (blue ring) also had a significant impact on cytotoxicity. This can be concluded from the results obtained for compounds 5f and 5g: the substitution of

Azide–alkyne cycloaddition (click) reaction in biomass-derived solvent Cyrene^TM under one-pot conditions

• Zoltán Medgyesi and
• László T. Mika

Beilstein J. Org. Chem. 2025, 21, 1544–1551, doi:10.3762/bjoc.21.117

• , a wide range of organic reactions, e.g., urea and amide formation [32][33], amide coupling [34], aldol condensation [35], C–H difluoromethylation [36], aromatic substitution [37], and MOFs synthesis [38] were demonstrated in CyreneTM. Very recently, Fasano and Citarella first reported a CuAAC

Azobenzene protonation as a tool for temperature sensing

• Antti Siiskonen,
• Sami Vesamäki and
• Arri Priimagi

Beilstein J. Org. Chem. 2025, 21, 1528–1534, doi:10.3762/bjoc.21.115

• Due to the lone pairs on their nitrogen atoms, azobenzenes are weak bases. Their basicity can be increased by electron-donating substituents on the benzene rings. para-Alkoxy substitution effectively increases the electron density at the azo-nitrogens without introducing additional protonation sites

• . We opted for methoxy substitution on one or both benzene rings as the simplest alkoxy substituent. The protonation of azobenzene (1), 4-methoxyazobenzene (2), and 4,4'-dimethoxyazobenzene (3) is schematized in Figure 1A. In the presence of a strong acid, these compounds form an equilibrium of neutral

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Marcin Palusiak,
• Heinz Heimgartner,
• Marta Denel-Bobrowska and
• Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

• the substitution pattern of both substrates, i.e., substituent Ar in the starting cyclopropane 3 and the R–N(1) moiety in the tetrazole derivative 4 [15]. Taking into account the known and widely documented importance of enolizable 5-mercapto-1H-tetrazoles as important bioisosters [17][18][19][20][21

• , ensuring that no additional symmetry elements were omitted during structure refinement. The obtained data undoubtedly confirmed the anticipated structures and their experimental characterizations. Thioaminal 9i and dithioacetal 10i differ significantly in the substitution of the tetrazole ring. This

• instances, depending on the substitution pattern, thermodynamically less stable thioaminals 9 underwent thermal isomerization in CDCl3 solution yielding the corresponding dithioacetals 10. Comparison of the results obtained with dispiro-substituted thiocarbonyl S-methanides 4c (less hindered) and 4d (more

Highly distinguishable isomeric states of a tripodal arylazopyrazole derivative on graphite through electron/hole-induced switching at ambient conditions

• Himani Malik,
• Sudha Devi,
• Debapriya Gupta,
• Ankit Kumar Gaur,
• Sugumar Venkataramani and
• Thiruvancheril G. Gopakumar

Beilstein J. Org. Chem. 2025, 21, 1496–1507, doi:10.3762/bjoc.21.112

• surface at ambient conditions. The fluorine substitution is chosen in FNAAP for its better photoisomerization efficiency (in solution as well as in solid state) and higher molecular stability [29]. Possible photoisomers of FNAAP, EEE, EEZ, EZZ and ZZZ are shown in Figure 1. FNAAP molecules assemble into

Photoredox-catalyzed arylation of isonitriles by diaryliodonium salts towards benzamides

• Nadezhda M. Metalnikova,
• Nikita S. Antonkin,
• Tuan K. Nguyen,
• Natalia S. Soldatova,
• Alexander V. Nyuchev,
• Mikhail A. Kinzhalov and
• Pavel S. Postnikov

Beilstein J. Org. Chem. 2025, 21, 1480–1488, doi:10.3762/bjoc.21.110

• for unsymmetrical iodonium salts. Therefore, we moved to these to test the selectivity of aryl transfer under the established conditions. Since iodonium salts are prone to repeat the selectivity pattern of nucleophilic substitution in photoredox processes [35][36][37][38][39][40][41], we evaluated

Copper catalysis: a constantly evolving field

• Elena Fernández and
• Jaesook Yun

Beilstein J. Org. Chem. 2025, 21, 1477–1479, doi:10.3762/bjoc.21.109

• substitution reactions [1]. In particular, the authors elaborate the concept and recent developments in this field, which allows access to enantioenriched chiral enynes. Interestingly, the article also illustrates the effects of the copper salt and the ligand employed, as well as the influence of the substrate

• substitution pattern on the regioselectivity and stereoselectivity of the reactions. A Review article by Papis and co-workers discusses various copper(II) triflate-catalyzed multicomponent reaction types [2]. Therein, the synthesis of cyclic and acyclic compounds, as well as three-component and four-component

• community in that it elegantly reviews recent advances in allylation reactions of copper-catalyzed asymmetric allylic substitution reactions of chiral secondary alkylcopper species [5]. In summary, the contribution includes stereospecific transmetalations of organolithium and -boron compounds, copper

Wittig reaction of cyclobisbiphenylenecarbonyl

• Taito Moribe,
• Junichiro Hirano,
• Hideaki Takano,
• Hiroshi Shinokubo and
• Norihito Fukui

Beilstein J. Org. Chem. 2025, 21, 1454–1461, doi:10.3762/bjoc.21.107

• nucleophilic substitution of the thus generated alkoxide to form an oxygen-containing five-membered ring. At least, density functional theory (DFT) calculations support that the nucleophilic attack of methylenetriphenylphosphorane to the exo-methylene unit is slightly favorable over reaction with the carbonyl

Advances in nitrogen-containing helicenes: synthesis, chiroptical properties, and optoelectronic applications

• Meng Qiu,
• Jing Du,
• Nai-Te Yao,
• Xin-Yue Wang and
• Han-Yuan Gong

Beilstein J. Org. Chem. 2025, 21, 1422–1453, doi:10.3762/bjoc.21.106

• sensitivity of chiral excited-state properties to heteroatom substitution within the helicene framework. Extending this design principle, the group reported a double N,S-hetero[5]helicene 58 constructed from two benzo[b]phenothiazine units in 2023 [73]. Compared to the N,O-analogue 57b, this new compound

• two π-extended hetero[6]helicenes – 61a and 61b – incorporating thiadiazole and selenadiazole moieties, respectively [76]. Substitution of sulfur with selenium enhanced intermolecular interactions and led to a notable reduction in the optical bandgap, highlighting the effectiveness of heteroatom