Novel truxene-based dipyrromethanes (DPMs): synthesis, spectroscopic characterization and photophysical properties

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2024, 20, 2163–2170, doi:10.3762/bjoc.20.186

• –80%) along with their preliminary photophysical (absorption, emission and time resolved fluorescence lifetime) properties. The condensation reaction for assembling the required DPMs were catalyzed with trifluoroacetic acid (TFA) at 0 °C to room temperature (rt), and the stable dipyrromethanes were

• truxenes with freshly distilled pyrrole using trifluoroacetic acid (TFA) as an acidic catalyst afforded the anticipated DPM-appended truxene derivatives (14, 16 and 18) in good yields (60–80%). All the newly prepared DPM-linked truxene-hybrid molecules as well as the intermediate acetylated truxene

• in freshly distilled pyrrole with different amounts (5 equiv for 14, 10 equiv for 16, and 15 equiv for 18). Then trifluoroacetic acid (TFA, 0.1 equiv for 14, 0.2 equiv for 16 and 0.3 equiv for 18) was added to the reaction mixture, and the resulting mixture was stirred at 0 °C (16) or 0 °C to rt (14

O,S,Se-containing Biginelli products based on cyclic β-ketosulfone and their postfunctionalization

• Kateryna V. Dil and
• Vitalii A. Palchykov

Beilstein J. Org. Chem. 2024, 20, 2143–2151, doi:10.3762/bjoc.20.184

• ). However, increasing acidity and using trifluoroacetic acid (Table 1, entry 17) did not improve the overall yield. We also tried microwave activation conditions since this is a known technique for reactions of this type [32], but unfortunately, we did not find any improvement in the yield (Table 1, entry

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• photocatalyst TAC+. The electrolysis was carried out at a constant cell potential of 1.5 V under white light irradiation. The carbonyl compound 144 was initially treated with tert-butyl carbazate (145) in acetonitrile in the presence of molecular sieves, followed by the addition of trifluoroacetic acid (TFA) to

Development of a flow photochemical process for a π-Lewis acidic metal-catalyzed cyclization/radical addition sequence: in situ-generated 2-benzopyrylium as photoredox catalyst and reactive intermediate

• Masahiro Terada,
• Zen Iwasaki,
• Ryohei Yazaki,
• Shigenobu Umemiya and
• Jun Kikuchi

Beilstein J. Org. Chem. 2024, 20, 1973–1980, doi:10.3762/bjoc.20.173

• generated in the flow reaction system through the intramolecular cyclization of ortho-carbonyl alkynylbenzene derivatives by the π-Lewis acidic metal catalyst AgNTf2 and the subsequent proto-demetalation with trifluoroacetic acid. The 2-benzopyrylium intermediates underwent further photoreactions with

• intramolecular cyclization followed by proto-demetalation with trifluoroacetic acid (TFA). In catalytic cycle II, photoexcitation of the generated 2-benzopyrylium intermediates A under light irradiation facilitates single-electron transfer (SET) from benzyltrimethylsilane derivatives 2 as the donor molecule

Novel oxidative routes to N-arylpyridoindazolium salts

• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2024, 20, 1906–1913, doi:10.3762/bjoc.20.166

• intermediate (i.e., the diarylamines’ radical cation) and indicates the dominance of the intramolecular cyclization over the intermolecular C–N coupling process. Oxidation of diarylamines in the presence of an excess of trifluoroacetic acid gave no targeted pyridoindazolium salts, whereas the amount of

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• due to the increased conductivity of the electrolyte solution (Table 1, entry 1). The reaction did not take place without electricity and most of the starting material was recovered (Table 1, entry 3). The addition of trifluoroacetic acid (TFA) was advantageous in terms of the reproducibility, which

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• reaction conditions. The authors performed the optimization study using 5-HMF (23), 2-aminothiazole (24) and tert-butyl isocyanide (5, Scheme 10). Inspired by a procedure reported by Demjén et al. [37], they found the best conditions using EtOH as a green solvent, trifluoroacetic acid (TFA, 20 mol %) or Yb

Diameter-selective extraction of single-walled carbon nanotubes by interlocking with Cu-tethered square nanobrackets

• Guoqing Cheng and
• Naoki Komatsu

Beilstein J. Org. Chem. 2024, 20, 1298–1307, doi:10.3762/bjoc.20.113

• @(12,2)-SWNT complexes. Chemical structures of Cu-tethered tetragonal nanobrackets 1a and 1b. Synthesis of nanobracket 4. Reaction conditions: i) XPhos Pd G2, XPhos, B2(OH)4, KOAc, EtOH, 80 °C, 2 h; ii) Br-Ar-Br, K2CO3, tetrahydrofuran (THF)/toluene, 80 °C, 16 h; iii) trifluoroacetic acid (TFA), pyrrole

The Ugi4CR as effective tool to access promising anticancer isatin-based α-acetamide carboxamide oxindole hybrids

• Carolina S. Marques,
• Aday González-Bakker and
• José M. Padrón

Beilstein J. Org. Chem. 2024, 20, 1213–1220, doi:10.3762/bjoc.20.104

• conditions (120 ºC, 30 minutes) (Scheme 3). Resourcefulness of the Ugi4CR and preliminary SAR studies [16] lead us to synthesize a third library of oxindole derivatives, using trifluoroacetic acid (TFA), under mild reaction conditions, to afford the corresponding α-acetamide carboxamide isatin hybrids 8 from

• -acetamide carboxamide isatin hybrids 8 easy accessed via deprotection reaction on the Ugi-adducts 5 and 7. TFA: trifluoroacetic acid. Supporting Information Supporting Information File 56: Experimental procedures, analytical data, NMR spectra and biological assays. Funding C. S. M. thanks the Norma

Introduction of peripheral nitrogen atoms to cyclo-meta-phenylenes

• Koki Ikemoto and
• Hiroyuki Isobe

Beilstein J. Org. Chem. 2024, 20, 1207–1212, doi:10.3762/bjoc.20.103

• -doped CMPs. Thus, when trifluoroacetic acid (TFA) was added to a solution of 3a in chloroform, bathochromic shifts in UV spectra were observed, indicating protonation-induced changes in the electronic properties [10]. Because of the weakly acidic nature of pyridinic nitrogen atoms, an excess amount of

• on the 0.0067 e·Å−3 isosurface for the electron density. Response towards acid treatment with nitrogen-doped CMPs. (a) Absorption spectra of 3a (CHCl3, 2.3 × 10−6 M) in the absence (black) and presence of trifluoroacetic acid (green: 4.3 × 10−2 M, blue: 2.1 × 10−1 M, red: 4.2 × 10−1 M). (b

• ) Absorption spectra of 6 (CHCl3, 1.9 × 10−6 M) in the absence (black) and presence of trifluoroacetic acid (green: 4.3 × 10−2 M, blue: 2.1 × 10−1 M, red: 4.2 × 10−1 M). Syntheses of 3a and 3b. Supporting Information Supporting Information File 50: Experimental and copies of spectra. Supporting Information

Cofactor-independent C–C bond cleavage reactions catalyzed by the AlpJ family of oxygenases in atypical angucycline biosynthesis

• Jinmin Gao,
• Liyuan Li,
• Shijie Shen,
• Guomin Ai,
• Bin Wang,
• Fang Guo,
• Tongjian Yang,
• Hui Han,
• Zhengren Xu,
• Guohui Pan and
• Keqiang Fan

Beilstein J. Org. Chem. 2024, 20, 1198–1206, doi:10.3762/bjoc.20.102

• analyzed on a Waters HPLC system equipped with a 1525 pump and a 2487 dual λ UV detector using an Agilent ZORBAX SB-C18 reversed-phase column (5 μm, 4.6 × 250 mm) or a SilGreen C18AB reversed-phase column (5 μm, 4.6 × 250 mm). The elution solvents were water with 0.1% (v/v) trifluoroacetic acid (solvent A

• ) and acetonitrile with 0.1% (v/v) trifluoroacetic acid (solvent B). A 20-min linear gradient from 25% (v/v) to 100% (v/v) solvent B was used with a flow rate of 1.0 mL⋅min−1. Absorbance at 266 and 313 nm was monitored. For SOD quench experiments, the reaction mixtures were analyzed on an Agilent 1260

Synthesis of 1,4-azaphosphinine nucleosides and evaluation as inhibitors of human cytidine deaminase and APOBEC3A

• Maksim V. Kvach,
• Stefan Harjes,
• Harikrishnan M. Kurup,
• Geoffrey B. Jameson,
• Elena Harjes and
• Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2024, 20, 1088–1098, doi:10.3762/bjoc.20.96

• obtained in 84% yield after silica gel purification. Removal of the Boc protecting group from 6 in the presence of trifluoroacetic acid in DCM at room temperature overnight, followed by cyclisation in boiling pyridine/triethylamine, led to 4-hydroxy-1,4-azaphosphinan-2,4-dione (7) in 84% yield. The free

• the linear amide 11 was performed in DCM using a 10-fold excess of trifluoroacetic acid at room temperature, providing 1,4-azaphosphinine 12 in 68% yield. Various conditions used for the coupling of nucleobase 8, such as using silylated derivatives (HMDS, BSA) or salts obtained by base treatment (NaH

• chloroacetate, Et3N, TMSCl, CH2Cl2, rt, 5 d, 84% yield; v) trifluoroacetic acid, CH2Cl2, rt, overnight, then 5 h reflux in pyridine/Et3N, 84% yield; vi) BnOH, O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium tetrafluoroborate (TBTU), Et3N, DCE, reflux, 3 h, 65% yield; vii) BnOH, absolute Et2O, pyridine, −78

Structure–property relationships in dicyanopyrazinoquinoxalines and their hydrogen-bonding-capable dihydropyrazinoquinoxalinedione derivatives

• Tural N. Akhmedov,
• Ajeet Kumar,
• Daken J. Starkenburg,
• Kyle J. Chesney,
• Khalil A. Abboud,
• Novruz G. Akhmedov,
• Jiangeng Xue and
• Ronald K. Castellano

Beilstein J. Org. Chem. 2024, 20, 1037–1052, doi:10.3762/bjoc.20.92

• ]pyrazine-2,3-dicarbonitrile (5a) Compound 5a was synthesized by a modified literature method [31]. To an oven dried sealed tube was added 5,6-diaminopyrazine-2,3-dicarbonitrile (12, 306 mg, 1.91 mmol), diphenylethanedione (benzil) (365 mg, 1.74 mmol), glacial acetic acid (7 mL), trifluoroacetic acid (1 mL

Auxiliary strategy for the general and practical synthesis of diaryliodonium(III) salts with diverse organocarboxylate counterions

• Naoki Miyamoto,
• Daichi Koseki,
• Kohei Sumida,
• Elghareeb E. Elboray,
• Naoko Takenaga,
• Ravi Kumar and
• Toshifumi Dohi

Beilstein J. Org. Chem. 2024, 20, 1020–1028, doi:10.3762/bjoc.20.90

• trifluoroacetic acid, followed by coupling with 1,3,5-trimethoxybenzene [18] (Scheme 1A). This process demonstrated tolerance for a wide range of electron-rich and electron-deficient (hetero)aryl iodine(III) compounds. Wirth and colleagues reported the flow synthesis of diaryliodonium(III) trifluoroacetates using

• compared to trifluoroacetic acid, TfOH, HBF4, and p-TsOH, present a wider substrate scope, including acid-sensitive groups, in the preparation of diaryliodonium(III) salts. While the counterion exchange of diaryliodonium(III) chloride with silver acetate was reported [20], this method required heating

• the diaryliodonium(III) salt by irradiating with 365 nm UV light. The counterion exchange in umbelliferone carboxylate salt 7aj with trifluoroacetic acid was rapid, and after 30 s, the completion of the reaction was confirmed by the emergence of strong blue fluorescence emission due to the liberation

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

Synthesis and characterization of water-soluble C₆₀–peptide conjugates

• Yue Ma,
• Lorenzo Persi and
• Yoko Yamakoshi

Beilstein J. Org. Chem. 2024, 20, 777–786, doi:10.3762/bjoc.20.71

• , ii) HBTU, DIPEA, in DMF, rt, overnight, and iii) trifluoroacetic acid (TFA)/triisopropylsilane (TIPS)/H2O, rt, 1.5–2 h. AA and PG stand for amino acid and protecting group, respectively. All AAs in 1a–c, 2a–c, and 4a–c were protected. Structure of C60–oligo-Lys (5a), C60–oligo-Glu (5b), and C60–oligo

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• deprotection of the 5′-OH group using 25% trifluoroacetic acid in tetrahydrofuran. Subsequently, the 5′-OH group of compounds 12a–e were reacted with sulfamoyl chloride in the presence of NaH. Compounds 13a–e were coupled to pre-activated Boc-ʟ-Phe-OSu in the presence of Cs2CO3. Removal of the Boc and TBS

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• photocatalyst 4CzIPN, which typically requires the use of strong H+ donors such as trifluoroacetic acid [49][50][51][52]. While many reports, including Okada’s original work, have suggested that a proton donor can accelerate the fragmentation rate of RAEs [29][49][53], specific values comparing the

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• obtained via treatment of 6,8-di-tert-butyl-N-aryl-3H-phenoxazin-3-imines with various arylamines in the presence of an excess of trifluoroacetic acid [9]. The structure of the newly synthesized compounds 5, which are derivatives of a previously unknown 14Н-quinoxaline[2,3-b]phenoxazine system 7a, was

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• treated with 90% aq trifluoroacetic acid in CH2Cl2 to give diol 7 (70% yield) that was formed due to migration of a chloroacetyl group from O-7 to O-9. The structure of diol 7 was established by NMR spectroscopy, high-resolution mass spectrometry and X-ray diffraction analysis (see the Experimental

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• Hock cleavage step under acidic conditions (Scheme 2 and Table 1). In the presence of trifluoroacetic acid (TFA, 1 equiv; Table 1, entry 1) or BF3·OEt2 (1 equiv; Table 1, entry 2), the rearrangement of 2 and 2’ led to a complex mixture of products including aldehyde 3, the typical product of the Hock

Controlling the reactivity of La@C₈₂ by reduction: reaction of the La@C₈₂ anion with alkyl halide with high regioselectivity

• Yutaka Maeda,
• Saeka Akita,
• Mitsuaki Suzuki,
• Michio Yamada,
• Takeshi Akasaka,
• Kaoru Kobayashi and
• Shigeru Nagase

Beilstein J. Org. Chem. 2023, 19, 1858–1866, doi:10.3762/bjoc.19.138

• not be eluted under typical fullerene HPLC separation conditions, trifluoroacetic acid was added to the reaction mixture. Notably, La@C2v-C82 is produced after the addition of trifluoroacetic acid to the La@C2v-C82 anion [20]. After removing the solvent under vacuum, the electrolyte was removed by

A novel recyclable organocatalyst for the gram-scale enantioselective synthesis of (S)-baclofen

• Gyula Dargó,
• Dóra Erdélyi,
• Balázs Molnár,
• Péter Kisszékelyi,
• Zsófia Garádi and
• József Kupai

Beilstein J. Org. Chem. 2023, 19, 1811–1824, doi:10.3762/bjoc.19.133

• applied between the catalytic and lipophilic units to avoid a decrease in the catalytic activity. The demethylated cinchona squaramide 6 was reacted with O-p-toluenesulfonyl-N-Boc-ethanolamine. The protecting group was removed using trifluoroacetic acid, followed by a neutralization step, gaining the

• , trifluoroacetic acid (5.74 mL, 75 mmol, 63 equiv) was added dropwise. The reaction mixture was stirred at room temperature for 1 h. Then, it was cooled to 0 °C, and a 40% NaOH(aq) solution was added to set the pH to 13. To this mixture, water (60 mL) was added, and it was extracted with DCM/MeOH 20:1 (60 mL

Tying a knot between crown ethers and porphyrins

• Maksym Matviyishyn and
• Bartosz Szyszko

Beilstein J. Org. Chem. 2023, 19, 1630–1650, doi:10.3762/bjoc.19.120

• with trifluoroacetic acid (TFA) resulted in a cationic 40-H+. Cyclic voltammetry and differential pulse voltammetry were performed to investigate the electrochemical properties of 40-H+. The cation exhibited two reversible oxidations and two to three reductions. The redox potentials were influenced by

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• -(alkyl/arylthio)succinimides 1 led to aryl sulfides 104 (Scheme 43) [77]. The cross-coupling reaction involves protonation of the succinimide moiety by trifluoroacetic acid (TFA) to create electrophilic thio intermediate I. Nucleophilic attack of arene 103 on I led to target product 104. Also, TFA