Hydrolysis, polarity, and conformational impact of C-terminal partially fluorinated ethyl esters in peptide models

• Vladimir Kubyshkin and
• Nediljko Budisa

Beilstein J. Org. Chem. 2017, 13, 2442–2457, doi:10.3762/bjoc.13.241

• fluorination of peptide scaffolds. One of these methods involves esterification of the C-terminus of peptides using a diazomethane species. Here, we provide an investigation of the physicochemical consequences of peptide esterification with partially fluorinated ethyl groups. Derivatives of N-acetylproline are

• previously [50]. The reference methyl and ethyl esters 1 and 2 were prepared by stirring of 6 in acidic alcohol (methanol or ethanol, respectively) at room temperature overnight (Scheme 1A). We attempted to employ the same procedure for esterification of 6 in trifluoroethanol. However, this resulted in a

• . Although the yield increased, it remained low (20%). The poor yields in the aqueous medium are explained by the high reactivity of the diazomethane species, which favors nonspecific reactions in water [52]. Very recently, more specific diazomethane reagents for water-tolerant esterification have also been

Phosphonic acid: preparation and applications

• Charlotte M. Sevrain,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2017, 13, 2186–2213, doi:10.3762/bjoc.13.219

• hydroxymethylenebisphosphonic acid 45 [167]. The trans-esterification of phosphonate with bromotrimethylsilane to produce silylated phosphonate requires at least two equivalents of BrSiMe3 per phosphonate function. Usually an excess is engaged in the reaction to guarantee a full conversion of dialkyl phosphonate into the

Mechanochemical synthesis of small organic molecules

• Tapas Kumar Achar,
• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2017, 13, 1907–1931, doi:10.3762/bjoc.13.186

• NaHCO3 (base); 2) esterification of N-protected amino acid using different dialkyl dicarbonate or alkyl chloroformate in the presence of DMAP as catalyst and followed by acidic workup. For N-terminal protection, different precursors like Fmoc-Cl, benzoyl chloride and Boc2O were used successfully to get

Selective enzymatic esterification of lignin model compounds in the ball mill

• Ulla Weißbach,
• Saumya Dabral,
• Laure Konnert,
• Carsten Bolm and
• José G. Hernández

Beilstein J. Org. Chem. 2017, 13, 1788–1795, doi:10.3762/bjoc.13.173

• Ulla Weissbach Saumya Dabral Laure Konnert Carsten Bolm Jose G. Hernandez Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, D-52074 Aachen, Germany 10.3762/bjoc.13.173 Abstract A lipase-catalyzed esterification of lignin model compounds in the ball mill was developed combining

• biocatalyst for these transformations. Noteworthy, various acyl donors of different chain lengths were tolerated under the mechanochemical conditions. Keywords: ball milling; enzymes; esterification; lignin derivatization; mechanochemistry; Introduction Mechanochemical reactions, particularly those carried

• lipophilicity, for instance through sulfation [18], silylation or esterification [19] of the aliphatic hydroxy and phenolic groups found in lignin. Chemical esterification of lignin [19][20][21] or its model compounds [22], using acetic anhydride in organic solvents such as DCM or pyridine have previously been

The chemistry and biology of mycolactones

• Matthias Gehringer and
• Karl-Heinz Altmann

Beilstein J. Org. Chem. 2017, 13, 1596–1660, doi:10.3762/bjoc.13.159

• of the mycolactone core Currently, all mycolactone partial and total syntheses share the (projected) final esterification of the C5-hydroxy group of the appropriately protected extended mycolactone core with the respective polyunsaturated fatty acid under Yamaguchi conditions (Figure 7). Two

A new member of the fusaricidin family – structure elucidation and synthesis of fusaricidin E

• Marcel Reimann,
• Louis P. Sandjo,
• Luis Antelo,
• Eckhard Thines,
• Isabella Siepe and
• Till Opatz

Beilstein J. Org. Chem. 2017, 13, 1430–1438, doi:10.3762/bjoc.13.140

• the esterification with DIC/DMAP [12] as the double acylation product 18 could be detected (Scheme 3). Further investigations suggested DMAP to be responsible for the cleavage of the ΨMe,Me'Pro and after reduction of the amount of DMAP to 5 mol %, nearly no doubly acylated product was found. Besides

• contrast to literature reports [12], it was found that cleavage from the resin with “reagent K” [12][21] was inferior to a TFA/TIS/H2O mixture (95:2.5:2.5). Due to the instability of ΨMe,Me'Pro during esterification and cyclization, the isolated yield of 19 was only 6% (Scheme 4). To improve this, O-tert

• -butyl-protected D-allo-Thr was employed instead. For the O-tert-butyl-protected D-allo-Thr, clean and complete conversion was observed during both esterification and deprotection. This time, cyclization was performed with PyAOP and NMM in NMP to provide 19 in an isolated yield of 37% (Scheme 5

A speedy route to sterically encumbered, benzene-fused derivatives of privileged, naturally occurring hexahydropyrrolo[1,2-b]isoquinoline

• Olga Bakulina,
• Alexander Ivanov,
• Vitalii Suslonov,
• Dmitry Dar’in and
• Mikhail Krasavin

Beilstein J. Org. Chem. 2017, 13, 1413–1424, doi:10.3762/bjoc.13.138

• 9), isolation of pure diastereomeric CCR adducts was achieved by total esterification of the carboxylic acid product mixture and chromatographic separation of the respective methyl esters (the 0.8:1 anti/syn-10e mixture stereoconverged to anti-10e' on esterification, vide infra). The trans

• formed as a 0.8:1 mixture of anti/syn diastereomers (Table 1). However, it was promptly noted that this mixture converges to thermodynamically more stable anti-10e (the isomerization occurs on heating to 80 °C or, more slowly, even at room temperature). Esterification of anti/syn-10e in the presence of

Synthesis of oligonucleotides on a soluble support

• Harri Lönnberg

Beilstein J. Org. Chem. 2017, 13, 1368–1387, doi:10.3762/bjoc.13.134

• order by esterification of phosphoric acid with the 3´-OH of one and the 5´-OH of the other nucleoside. Usually, the 3´-OH is first esterified with an appropriate derivative of phosphoric acid and the resulting building block is then reacted with the 5´-OH (Figure 1). Either a linear or a convergent

• of the phosphoramidite for coupling, the fully protected hexamer was obtained in 67% yield. Ammonolysis and ion-exchange chromatographic purification then gave hexamer d(5´-ATGCTT-3´) in isolated 39% yield. Esterification of a 5´-O-DMTr-3´-O-succinylthymidine with 3-(2-hydroxyethyl)-1-methyl-1H

An improved preparation of phorbol from croton oil

• Alberto Pagani,
• Simone Gaeta,
• Andrei I. Savchenko,
• Craig M. Williams and
• Giovanni Appendino

Beilstein J. Org. Chem. 2017, 13, 1361–1367, doi:10.3762/bjoc.13.133

• activity. While efficient chemoselective esterification protocols have been developed for phorbol, its isolation from croton oil is technically complicated, and involves extensive manipulation of very toxic materials like the oil or its native diterpenoid fraction. Results: The preparation of a crude non

• group. Partition between methanol and hexane afforded a crude mixture of phorbol diesters, that was next tritylated. After deacylation by basic treatment and chromatography, 20-tritylphorbol (1c) was obtained, as a hydrate, in sufficient purity to be used as starting material for the esterification [18

Strategies toward protecting group-free glycosylation through selective activation of the anomeric center

• A. Michael Downey and
• Michal Hocek

Beilstein J. Org. Chem. 2017, 13, 1239–1279, doi:10.3762/bjoc.13.123

• ]. 5.1.2 Esterification of benzoic acids with glycosyl donors: Again in 2015 Kawabata and co-workers applied the Mitsunobu reaction to an unprotected and unactivated donor in the first step of the total synthesis of two ellagitannins. Using a moderate excess

Total syntheses of the archazolids: an emerging class of novel anticancer drugs

• Stephan Scheeff and
• Dirk Menche

Beilstein J. Org. Chem. 2017, 13, 1085–1098, doi:10.3762/bjoc.13.108

• could successfully couple the three main fragments 39, 40 and 6 by first a Stille reaction, followed by a Kita esterification. Notably, this esterification was critical to avoid unfavorable isomerizations. For closing of the macrolide core they planned a challenging Hoye relay ring closing metathesis

• . Completion of the total synthesis Final assembly of the fragments as shown in Scheme 11 began with an unusual [Ru]-catalyzed Kita esterification due to the instability of fragment 40 towards basic esterification approaches [84]. The following Stille coupling with stannane 39 was then accomplished by CuTC co

• useful for new approaches to the 24-membered macrolide core. For the completion of the synthesis of 3 the side chain would have to be introduced, followed by an oxidation to the acid and a ring closing esterification. Concise synthesis of the thiazole fragment In an earlier synthesis the O’Neil group had

Conformational study of L-methionine and L-cysteine derivatives through quantum chemical calculations and ³J_HH coupling constant analyses

• Weslley G. D. P. Silva,
• Carolyne B. Braga and
• Roberto Rittner

Beilstein J. Org. Chem. 2017, 13, 925–937, doi:10.3762/bjoc.13.94

• compounds [31]. Compounds 3 and 4 were obtained by the esterification of the corresponding N-acetyl-L-amino acids (Sigma-Aldrich), following a known procedure [23][32]. The detailed syntheses are described in Supporting Information File 1. Spectroscopic measurements 1H NMR spectra for 1, 3 and 4 were

First total synthesis of kipukasin A

• Chuang Li,
• Haixin Ding,
• Zhizhong Ruan,
• Yirong Zhou and
• Qiang Xiao

Beilstein J. Org. Chem. 2017, 13, 855–862, doi:10.3762/bjoc.13.86

• . Various spectral analyses (NMR, HPLC) showed no evidence that 2,3-O-transesterification occurred during the esterification reaction. After cleavage of the acetonide group with acetic acid/acetic anhydride/H2SO4, the key glycosylation donor 16 was obtained in 74% yield as a mixture of isomers (α/β = 1:8

Posttranslational isoprenylation of tryptophan in bacteria

• Masahiro Okada,
• Tomotoshi Sugita and
• Ikuro Abe

Beilstein J. Org. Chem. 2017, 13, 338–346, doi:10.3762/bjoc.13.37

• processed, often with methyl esterification of the resulting C-terminal isoprenylcysteine. Considering the consensus sequence, a variety of organisms may produce isoprenylated peptides and proteins. Subsequently, numerous isoprenylated peptides and proteins, such as G-proteins including the human oncogene

Continuous N-alkylation reactions of amino alcohols using γ-Al₂O₃ and supercritical CO₂: unexpected formation of cyclic ureas and urethanes by reaction with CO₂

• Emilia S. Streng,
• Darren S. Lee,
• Michael W. George and
• Martyn Poliakoff

Beilstein J. Org. Chem. 2017, 13, 329–337, doi:10.3762/bjoc.13.36

• products, mainly via the amination pathway; however, some esterification/deamination was observed as N-methylmorpholine (9) was also detected. CO2 incorporation in 12 and 15 was perhaps the most surprising result as this occurred at lower temperatures compared to the cyclisation, however at higher

NMR reaction monitoring in flow synthesis

• M. Victoria Gomez and
• Antonio de la Hoz

Beilstein J. Org. Chem. 2017, 13, 285–300, doi:10.3762/bjoc.13.31

• ] studied the pros and cons of a benchtop NMR instrument at 45 MHz (Pico Spin-45). For this purpose, they studied reactions like the Fisher esterification, Suzuki reactions, and oxime formation and they analyzed the samples by simple injection of aliquots in the inlet port through an HPLC filter using non

Versatile synthesis of the signaling peptide glorin

• Robert Barnett,
• Daniel Raszkowski,
• Thomas Winckler and
• Pierre Stallforth

Beilstein J. Org. Chem. 2017, 13, 247–250, doi:10.3762/bjoc.13.27

• challenge in the syntheses of glorin and analogs is the differentiation between the α- and the γ-carboxylic acid groups of L-glutamic acid for selective esterification or amidation. α-Selective functionalization was achieved via synthesis of oxazolidinone 6 from Cbz-L-glutamic acid (5) with paraformaldehyde

A novel method for heterocyclic amide–thioamide transformations

• Walid Fathalla,
• Ibrahim A. I. Ali and
• Pavel Pazdera

Beilstein J. Org. Chem. 2017, 13, 174–181, doi:10.3762/bjoc.13.20

• heating isatine with malonic acid followed by esterification of the produced quinoline carboxylic acid with methanol in the presence of sulfuric acid at 80 °C for 6 h. 4-Arylphthalazin-1(2H)-ones A7 and A8 [24][25] were prepared by Friedel–Crafts acylation reaction of N-aminophthalimide with either

Total synthesis of a Streptococcus pneumoniae serotype 12F CPS repeating unit hexasaccharide

• Peter H. Seeberger,
• Claney L. Pereira and
• Subramanian Govindan

Beilstein J. Org. Chem. 2017, 13, 164–173, doi:10.3762/bjoc.13.19

• -azidomannose moiety of 46 was converted to the corresponding mannosaminuronic acid by cleaving the C6 benzoate ester using sodium methoxide in methanol and selective oxidation of the primary alcohol of 47 using BAIB/TEMPO. Tetrasaccharide acceptor 48 was obtained by esterification of the carboxylic acid under

Chemical probes for competitive profiling of the quorum sensing signal synthase PqsD of Pseudomonas aeruginosa

• Michaela Prothiwa,
• Dávid Szamosvári,
• Sandra Glasmacher and
• Thomas Böttcher

Beilstein J. Org. Chem. 2016, 12, 2784–2792, doi:10.3762/bjoc.12.277

• one-pot reaction for the synthesis of 2-heptyl-chromen-4-one (1-O-HHQ, 4) which includes esterification, Baker–Venkataraman rearrangement and subsequent acid-catalyzed ring closure to affort the 1-O-HHQ in 60% yield [36] (Scheme 1). The 2-heptyl-3-hydroxychromen-4-one (1-O-PQS, 13) was previously

Identification, synthesis and mass spectrometry of a macrolide from the African reed frog Hyperolius cinnamomeoventris

• Markus Menke,
• Pardha Saradhi Peram,
• Iris Starnberger,
• Walter Hödl,
• Gregory F.M. Jongsma,
• David C. Blackburn,
• Mark-Oliver Rödel,
• Miguel Vences and
• Stefan Schulz

Beilstein J. Org. Chem. 2016, 12, 2731–2738, doi:10.3762/bjoc.12.269

• , followed by esterification with 9-decenoic acid (8) using 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) and 4-(dimethylamino)pyridine (DMAP) [24][25]. The following RCM was performed using Grubbs–Hoveyda II catalyst (11) and hexafluorobenzene as an additive [26]. During the reaction isomerization

• material. After copper-catalyzed opening of the epoxide with 6-heptenylmagnesium bromide obtained from 7-bromo-1-heptene (14) and Steglich esterification with 5-hexenoic acid (16), RCM using (Z)-selective Grubbs catalyst 12 was used to synthesize macrolide (R)-1 without any isomerization. Comparison of the

Electron-transfer-initiated benzoin- and Stetter-like reactions in packed-bed reactors for process intensification

• Anna Zaghi,
• Daniele Ragno,
• Graziano Di Carmine,
• Carmela De Risi,
• Olga Bortolini,
• Pier Paolo Giovannini,
• Giancarlo Fantin and
• Alessandro Massi

Beilstein J. Org. Chem. 2016, 12, 2719–2730, doi:10.3762/bjoc.12.268

• homogeneous conditions and their subsequent utilization in transesterification and amidation processes by the reaction telescoping approach [12]. Similarly, the group of Brown reported on the oxidative esterification and amidation of aldehydes in undivided microfluidic electrolysis cells mediated by

• reaction setup [22][23][24]. An integrated flow system for the synthesis of biodiesel employing an uninterrupted sequence of two fixed-bed reactors packed with a supported acid for esterification of free fatty acids and with an immobilized imidazolidene catalyst for transesterification has been recently

Selective synthesis of thioethers in the presence of a transition-metal-free solid Lewis acid

• Federica Santoro,
• Matteo Mariani,
• Federica Zaccheria,
• Rinaldo Psaro and
• Nicoletta Ravasio

Beilstein J. Org. Chem. 2016, 12, 2627–2635, doi:10.3762/bjoc.12.259

• agreement with the acidic character of these materials, often shown by our group. In particular we reported on the relevant activity and robustness of SiZr 4.7 in the esterification of fatty acids with methanol [24] or with polyols [25][26]. However, significant differences were found among the four solids

Facile synthesis of indolo[3,2-a]carbazoles via Pd-catalyzed twofold oxidative cyclization

• Chao Yang,
• Kai Lin,
• Lan Huang,
• Wei-dong Pan and
• Sheng Liu

Beilstein J. Org. Chem. 2016, 12, 2490–2494, doi:10.3762/bjoc.12.243

• Houpis protocol [15], Cu-catalyzed selective monoaminations of the 2,4-dibromobenzoic acid at the 2-position were achieved. After methyl esterification of ortho-aminated benzoic acids, substrates 4a and b were treated with other anilines under the previous Buchwald–Hartwig conditions to afford methyl 2,4

Enduracididine, a rare amino acid component of peptide antibiotics: Natural products and synthesis

• Darcy J. Atkinson,
• Briar J. Naysmith,
• Daniel P. Furkert and
• Margaret A. Brimble

Beilstein J. Org. Chem. 2016, 12, 2325–2342, doi:10.3762/bjoc.12.226

• Fmoc-D-Thr(TES)-OH on HMPB-NovaPEG resin. Successive couplings afforded peptide 104 (Scheme 23). Esterification with Alloc-Ile-OH and extension of the linear chain using conventional Fmoc SPPS afforded ester-peptide 105. Deprotection of the N-alloc group and coupling of the key L-allo-enduracididine

• 102 residue proceeded smoothly giving resin bound peptide 106. Brief (30 seconds) treatment of 106 with piperidine afforded the desired deprotected product, enabling coupling of the final amino acid. Extended exposure of peptide 106 to piperidine led to de-esterification. Final Fmoc removal of 107 and