A Diels–Alder probe for discovery of natural products containing furan moieties

• Alyssa S. Eggly,
• Namuunzul Otgontseren,
• Carson B. Roberts,
• Amir Y. Alwali,
• Haylie E. Hennigan and
• Elizabeth I. Parkinson

Beilstein J. Org. Chem. 2024, 20, 1001–1010, doi:10.3762/bjoc.20.88

• -carbon chain shown with 8, conversion dropped to an average of 86%. This is likely because the bulkier side chain sterically hinders the molecules from aligning in the optimal orientation for the HOMO and LUMO to interact. Similar high yields were observed with 10 and 11. The maleimide probe also worked

Confirmation of the stereochemistry of spiroviolene

• Yao Kong,
• Yuanning Liu,
• Kaibiao Wang,
• Tao Wang,
• Chen Wang,
• Ben Ai,
• Hongli Jia,
• Guohui Pan,
• Min Yin and
• Zhengren Xu

Beilstein J. Org. Chem. 2024, 20, 852–858, doi:10.3762/bjoc.20.77

• boron migration occurred during the hydroboration process of spiroviolene that resulted in the production of a mixture of 1α-hydroxyspiroviolane, 9α- and 9β-hydroxyspiroviolane after oxidation. The assertion of the cis-orientation of the 19- and 20-methyl groups provided further support for the revised

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• °C in deoxygenated 30 mM tricine buffer at pH 7.5. Alpha-fold model of Vs NnlA dimer (cyan) overlayed with Pseudomonas aeruginosa (grey; PDB: 3VOL [35][36]) to estimate the position and orientation of the heme cofactor. Conserved residues in the distal heme pocket are labeled. Conserved basic

Evaluation of the enantioselectivity of new chiral ligands based on imidazolidin-4-one derivatives

• Jan Bartáček,
• Karel Chlumský,
• Jan Mrkvička,
• Lucie Paloušová,
• Miloš Sedlák and
• Pavel Drabina

Beilstein J. Org. Chem. 2024, 20, 684–691, doi:10.3762/bjoc.20.62

• effective transition state includes the electrophile positioned in the equatorial site (strongly coordinated) and the nucleophile in the perpendicular site (weakly coordinated) [19]. The most favourable orientation of aldehyde should be out of the ligand’s molecular parts, thus forming E-configuration at

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• by analysis of NOESY data (Figure 3). NOE cross peaks from H-15 to H-2, 6-OH, and from H-3 to 6-OH indicated the cofacial orientation of these groups, while correlations from 1-OH to H-8, 7-OH, 2-OMe, and 3-OH suggested the opposite position of these groups. To unambiguously clarify the structure of

• . Key 1H-1H COSY (bond lines), and HMBC (red arrows) correlations of 1–3. NOE correlations of compounds 1 and 2 (solid line indicates β-orientation and dashed lines represent α-orientation). X-ray crystal structure of compounds 1–3 (with a thermal ellipsoid probability of 50%). Proposed biosynthetic

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• rotated to maximize the distances between the lone pairs of the electron-rich fluorine and oxygen atoms. Usually, one of the fluorine atoms lies in a syn orientation to an oxygen (e.g., 3f has an F–C–C–O dihedral angle of 15.6°) creating a dipole. This dipole appears to aid crystal packing by forming weak

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• antiparallel orientation of the closely spaced cationic fragments of base 5 can be reversed to the opposite. This can be achieved with 4,6-dichlororesorcinol, a well-known molecular organizer and coordinating agent [20][21]. Thus, the joint crystallization of dipyridoacenaphthene 5 and 4,6-dichlororesorcinol

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• of 63 in toluene revealed that the lowest singlet excited state (S1) decays mono-exponentially to the ground state (S0) within approximately 1 ps, suggesting the existence of an accessible CI between S1 and S0. In the S1 minimum conformation of 63, the PCBD moiety adopted a planar orientation

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• ligand and DNA bases [72]. To gain additional information about the orientation of the benzo[c]quinolizinium ligand in the intercalation site, the reduced LD (LDr) spectrum was determined exemplarily for ligand 3f (Supporting Information File 1, Figure S15) [74][75]. The analysis of the data revealed a

• binding angle α = 59° between the ligand 3f and the DNA helix, thus indicating a tilted orientation of the ligand relative to the DNA base pairs within the binding site. The DNA-binding ligands were also generated in situ in the presence of DNA. For that purpose, solutions of the styrylpyridines 2d–g and

Preparing a liquid crystalline dispersion of carbon nanotubes with high aspect ratio

• Keiko Kojima,
• Nodoka Kosugi,
• Hirokuni Jintoku,
• Kazufumi Kobashi and
• Toshiya Okazaki

Beilstein J. Org. Chem. 2024, 20, 52–58, doi:10.3762/bjoc.20.7

• this study. On the other hand, despite higher L/D, the CNT orientation in the film prepared from the dispersion was comparable to the previous study. This suggests that further optimization of the deposition process is necessary to create highly oriented CNT films. Results and Discussion To prepare

• (Figure 2e). This indicates that the L/D had a greater impact on the transition concentrations than the ζ-potential. In the biphasic state, the spindle nematic phase droplets, tactoids, were observed (Figure 2c). These were classified into two types depending on the orientation of the DWCNT [22][23][29

• to the randomly oriented DWCNTs beneath the surface, the densification of aligned DWCNTs toward the edge region could account for the similar orientation degree to the previous lower L/D SWCNT film [23]. To obtain highly aligned CNT films, the condition of drying step [33], the surfactant

Aldiminium and 1,2,3-triazolium dithiocarboxylate zwitterions derived from cyclic (alkyl)(amino) and mesoionic carbenes

• Nedra Touj,
• François Mazars,
• Guillermo Zaragoza and
• Lionel Delaude

Beilstein J. Org. Chem. 2023, 19, 1947–1956, doi:10.3762/bjoc.19.145

• attractive coulombic interactions between the opposite charges were held responsible for this orientation [79]. In addition, the presence of bulky aryl substituents in the vicinity of the sulfur atoms should further restrict their conformational freedom. As a matter of fact, the largest deviation from

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• same atoms as at the start. Visually, only a part of the GAG’s final pose overlaps with the initial one. The final pose adapts a perpendicular conformation to the starting GAG chain orientation (Figure 3). Acidic FGF Ligand 1. RMSD slowly increased during the first phase (windows from 1 to 8) of

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• , depending on the orientation of the planes in the solid. Also in electromicrofluidic reactors, graphite electrodes are used. It was thus tempting to try OEEF-induced anion–π catalysis in the absence of MWCNTs, directly on graphite. However, without MWCNTs drop casted on the graphite electrode, the

• their orientation, and accelerate and direct electron displacement during the reaction. This translation of the external field into local oriented macrodipoles solves one important challenge that has delayed progress with OEEF-induced catalysis. Namely, the fields predicted to accelerate and direct the

Unprecedented synthesis of a 14-membered hexaazamacrocycle

• Anastasia A. Fesenko and
• Anatoly D. Shutalev

Beilstein J. Org. Chem. 2023, 19, 1728–1740, doi:10.3762/bjoc.19.126

• NMR spectrum in DMSO-d6 shows the presence of two methylpyrazole moieties (singlet signals of two methyl groups at 3.63 and 3.70 ppm, singlet signals of two CH protons of pyrazole rings at 7.81 and 7.84 ppm), a H–N–C–H fragment with trans-orientation of protons (two doublets at 9.87 and 7.50 ppm, 3J

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• of compounds is also related to the ability of N-acylhydrazones to exist as different isomers and/or tautomers. They can exist as geometric isomers (E/Z), which differ in the orientation of the groups around the carbon–nitrogen double bond [2][3], as well as amido and iminol tautomers [4]. The

Sulfur-containing spiroketals from Breynia disticha and evaluations of their anti-inflammatory effect

• Ken-ichi Nakashima,
• Naohito Abe,
• Masayoshi Oyama,
• Hiroko Murata and
• Makoto Inoue

Beilstein J. Org. Chem. 2023, 19, 1604–1614, doi:10.3762/bjoc.19.117

• well as the HMBC correlations of H2-2 with C-3 and C-17, this substituent was identified as a (2-amino-2-oxoethyl)thio group. This substituent has been reported in several alkaloids isolated from plants in the Aristolochiaceae family [17][18]. Compound 3 had a β orientation for the sulfur-containing

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• vinyl groups [132], demonstrating a promising new orientation of radical hydrosilylation. It is noteworthy, that since the 1940s, polysiloxanes were crosslinked via hydrogen abstraction from Si–CH3 and a radical coupling mechanism like polyolefins, vide supra [133]. Irradiation can also lead to the

Unraveling the role of prenyl side-chain interactions in stabilizing the secondary carbocation in the biosynthesis of variexenol B

• Moe Nakano,
• Rintaro Gemma and
• Hajime Sato

Beilstein J. Org. Chem. 2023, 19, 1503–1510, doi:10.3762/bjoc.19.107

• cyclization reaction from the exomethylene group proceeds without a barrier, similar to the previous pathway. Regarding the orientation of the prenyl side chain, two pathways can be considered depending on whether the hydrogen at C14 is pointing; α-hydrogen (path a) or β-hydrogen (path b). Both pathways

• variexenol B including cation–π interaction from the prenyl side chain. Path a has an α-hydrogen at the C14 position in IM2, while path b has the opposite orientation. (B) Energy diagram of variexenol B with consideration of cation–π interaction. Potential energies (kcal/mol, Gibbs free energies calculated

Organic thermally activated delayed fluorescence material with strained benzoguanidine donor

• Alexander C. Brannan,
• Elvie F. P. Beaumont,
• Nguyen Le Phuoc,
• George F. S. Whitehead,
• Mikko Linnolahti and
• Alexander S. Romanov

Beilstein J. Org. Chem. 2023, 19, 1289–1298, doi:10.3762/bjoc.19.95

• , and 1H/13C NMR spectroscopy. Proton NMR shows a complicated set of overlapping multiplets indicating that the reaction results in the formation of various isomers (rotamers) which are different by relative orientation of the benzoguanidine donor moieties with respect to each other (Figure 2, see

• of 4BGIPN in triclinic form was refined in isotropic model, therefore, we do not discuss in detail the structural parameters. We only note that both forms are not due to the polymorphism but rather due to rotational isomerism of the 4BGIPN material, i.e., different orientation of the benzoguanidine

• possesses a twisted orientation between the donor (benzoguanidine) and acceptor (benzonitrile) ligands (Figure 2) due to steric hindrance imposed by benzoguanidine ligands and reflected by the torsion angle (α) laying in the range of 42.5(2)–64.3(2)º. We compared it with the more narrow torsion angle range

Radical ligand transfer: a general strategy for radical functionalization

• David T. Nemoto Jr,
• Kang-Jie Bian,
• Shih-Chieh Kao and
• Julian G. West

Beilstein J. Org. Chem. 2023, 19, 1225–1233, doi:10.3762/bjoc.19.90

• functionalization via the canonical organometallic steps of oxidative addition/reductive elimination was ruled out via catalytic reaction of the macrocyclic Groves-type porphyrin catalyst V, a species that is unable to accommodate the mutual cis-orientation of ligands for metal-centered reductive elimination. The

Two new lanostanoid glycosides isolated from a Kenyan polypore Fomitopsis carnea

• Winnie Chemutai Sum,
• Sherif S. Ebada,
• Didsanutda Gonkhom,
• Cony Decock,
• Rémy Bertrand Teponno,
• Josphat Clement Matasyoh and
• Marc Stadler

Beilstein J. Org. Chem. 2023, 19, 1161–1169, doi:10.3762/bjoc.19.84

• careful comparison of the 1H and 13C NMR data with those of related compounds and ROESY correlations. The orientation of H-3 (δH 4.68, t, J = 2.8 Hz) was determined to be β based on comparing the measured and the reported coupling constants and chemical shifts for related lanostanoid derivatives [13][23

• ][29][30]. Indeed, when the proton H-3 has a β-orientation as in compound 1, it resonates in the form of a broad singlet or else in the form of a triplet with a small coupling constant indicating its equatorial disposition [31][32]. When this proton has an α-orientation, it resonates as a doublet of

• doublet with coupling constants around 4.5 and 11 Hz [28][33]. The β-orientation of H-3 in compound 1 was further supported not only by the ROESY correlation observed between H-3 (δH 4.68, t, J = 2.8 Hz) and Me-29 (δH 0.95, s), but also by the fact that 3-epipachymic acid (3) and 3α,25S-3-O-malonyl-23

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

Synthesis of imidazo[4,5-e][1,3]thiazino[2,3-c][1,2,4]triazines via a base-induced rearrangement of functionalized imidazo[4,5-e]thiazolo[2,3-c][1,2,4]triazines

• Dmitry B. Vinogradov,
• Alexei N. Izmest’ev,
• Angelina N. Kravchenko,
• Yuri A. Strelenko and
• Galina A. Gazieva

Beilstein J. Org. Chem. 2023, 19, 1047–1054, doi:10.3762/bjoc.19.80

• carbonyl groups of the urea fragment are observed (Figure 4). Values of spin–spin interaction constants 3JCH equal to 5.3–6.0 Hz indicate the cis-orientation of the vinyl proton and the carbonyl (for 4a, blue) or the carboxyl group (for 5a, red) relative to the double bond [24][25][26]. The values of spin

Five new sesquiterpenoids from agarwood of Aquilaria sinensis

• Hong Zhou,
• Xu-Yang Li,
• Hong-Bin Fang,
• He-Zhong Jiang and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 998–1007, doi:10.3762/bjoc.19.75

• ). Thus, the planar structure of 3 was assigned (Figure 1). Further analysis of the coupling constants of H-7 (JH-7, Ha-6 = 3.3 Hz and JH-7, Hb-6 = 2.8 Hz) and the ROESY correlation (Figure 3) of H3-15/Hb-6 allowed us to conclude that H3-15 and H-7 are in the opposite orientation. Thus, the relative

• of 5 was assigned. Analysis of the coupling constants of H-7 (JH-7, Ha-6 = 2.6 Hz) and the ROESY (Figure 3) correlations of H3-15/Hb-6 show that H3-15 and H-7 are in the opposite orientation. NMR calculations were performed to clarify the relative configuration at C-11. Finally, the relative

Synthesis of substituted 8H-benzo[h]pyrano[2,3-f]quinazolin-8-ones via photochemical 6π-electrocyclization of pyrimidines containing an allomaltol fragment

• Constantine V. Milyutin,
• Andrey N. Komogortsev,
• Boris V. Lichitsky,
• Mikhail E. Minyaev and
• Valeriya G. Melekhina

Beilstein J. Org. Chem. 2023, 19, 778–788, doi:10.3762/bjoc.19.58

• molecules. One molecule of 11g is shown in Figure 3. The other molecules have very similar conformations, but the methoxy group in some molecules exhibits an opposite orientation. The mechanism of formation of products 11g–j is similar to the presented mechanism above for the methoxy derivatives 11a–f