Innovative synthesis of drug-like molecules using tetrazole as core building blocks

• Jingyao Li,
• Ajay L. Chandgude,
• Qiang Zheng and
• Alexander Dömling

Beilstein J. Org. Chem. 2024, 20, 950–958, doi:10.3762/bjoc.20.85

• , metabolic stability, conformational rigidity, and potency [7][8][9]. Recently, the use of the tetrazole moiety in drug development has been increased and exhibited prevalent occurrence in bioactive compounds; being present in more than 20 marketed drugs with a very broad range of biological activities such

Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• therefore plays a very important role in many vital biological processes in the human body and other life forms. Uracil is rarely found in DNA, due to its lower stability and mutagenic properties when mismatched with guanine [2][3][4][5]. This fact can be used to differentiate between RNA and DNA-dependent

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• candidates in development. Bioisosteres of para-benzenes, such as those based on bicyclo[1.1.1]pentane, are now very common and can be used to increase aqueous solubility and improve metabolic stability, among other benefits. Bioisosteres of ortho- and meta-benzenes were for a long time severely

• early drug discovery process. In many cases, the primary aim is the enhancement of biological activity, but in others, modulation of other critical properties such as aqueous solubility, metabolic stability, polarity, or lipophilicity is the target. In the latter cases, there is often a desire to retain

• partition coefficient (logP) as a measure of compound polarity, aqueous solubility (desired value: >200 μM [26]), and intrinsic clearance rate (CLint, lower indicates higher metabolic stability) as a measure of metabolic stability. Additional properties will be discussed if comparative values have been

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• alkene reactivity is essential. Two reactivity scales for alkenes are available in the literature, one considering the reactivity of the alkene itself (Mayr scale) [25] and the other the stability of the corresponding cation after protonation (hydride affinities) [26]. In the polar hydrochlorination

• ). Conveniently, these parameters are freely available on Mayr's database of reactivity parameters [28]. On the other hand, one can assess the stability of the in situ-generated cation. The greater its stability, the easier the protonation of the alkene will be, making it more reactive towards hydrochlorination

• , HCl gas was bubbled through neat alkene 1 for several hours, as depicted in Scheme 3A [35]. This example highlights an intriguing regioselectivity that might have been challenging to predict through a simple analysis of the stability of the corresponding cations. Alternatively, the HCl gas was bubbled

Synthesis of new representatives of A₃B-type carboranylporphyrins based on meso-tetra(pentafluorophenyl)porphyrin transformations

• Victoria M. Alpatova,
• Evgeny G. Rys,
• Elena G. Kononova and
• Valentina A. Ol'shevskaya

Beilstein J. Org. Chem. 2024, 20, 767–776, doi:10.3762/bjoc.20.70

• biomacromolecule [10][11]. In this context, fluorinated porphyrins have attracted considerable interest due to their biological properties such as low toxicity, metabolic stability, and cellular uptake. The introduction of a fluorine atom into the molecule is the feasibility to change drastically its biological

• meso-pentafluorophenyl-substituted porphyrins. Carboranes, due to their unique physical and chemical properties such as high chemical and biological stability [28][29], three-dimensional aromaticity [30][31], low toxicity [28], high hydrophobicity, and enriched boron content [32][33] are perspective

• compounds in drug development [34][35][36][37]. Owing to their stability, carboranes also may increase the in vivo stability and bioavailability of pharmaceuticals that might otherwise rapidly metabolize [38]. The functionalization of porphyrins with carborane clusters provides dual-action photo(radio

Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• ) ameliorates myocardial ischemia or myocardial infarction induced by coronary ligation. Although crocin and crocetin derivatives exhibit a diverse scope of biological activity, they are characterized by poor stability and low bioavailability, which has significantly impeded clinical developments. Recently

• , novel pharmaceutical systems, such as liposomes, microcapsules, and nanoparticles, were adopted to enhance the stability and bioavailability of these compounds [13][14][15]. To find a sustainable way of supplying crocins, researchers have developed various approaches to produce them, including plant

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• stability, etc. Emerging research methods on bioinformatics, computational modeling, deep learning, protein engineering, and high-throughput screening will accelerate the pace of enzyme discovery to provide a broader platform of tools for employing chemoenzymatic strategies [64][87][88][89]. More

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• ]. On the other hand, the nature of the alkene might be limited as it would strongly influence the oxidation potential of the carbon radical and the stability of the resulting carbocation. Recently, we reported the first successful application of an RPC strategy for the azido-alkynylation of styrenes

Organic electron transport materials

• Joseph Cameron and
• Peter J. Skabara

Beilstein J. Org. Chem. 2024, 20, 672–674, doi:10.3762/bjoc.20.60

• orthogonal processing. One of the biggest challenges with n-type materials is air stability. This is explained by the redox potentials of water (−0.66 V vs standard calomel electrode (SCE)) and oxygen (+0.024 V vs SCE, +0.57 V vs SCE) [2][3]. Therefore, it has been observed that once the overpotential

HPW-Catalyzed environmentally benign approach to imidazo[1,2-a]pyridines

• Luan A. Martinho and
• Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2024, 20, 628–637, doi:10.3762/bjoc.20.55

• is known for its chemical and thermal stability. Herein, we report a straightforward approach to the GBB-3CR using HPW as catalyst in ethanol under microwave (μw) heating. This convenient environmentally benign methodology is broad in scope, provides the heterobicyclic products in high yields (up to

• green catalyst with greater chemical and thermal stability in comparison to other heteropolyacids [43]. HPW has been shown to catalyze MCRs in the synthesis of heterocyclic compounds with high efficiency and chemoselectivity (Figure 2), including functionalized benzo[c]chromeno[2,3-a]phenazine [44

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• the potential energy surface, a curved conformation (conformation 2 in Figure 1d) exists. Our previous results suggested that conformation 2 is a metastable state. The relative stability of these conformations is known to vary depending on the surrounding environment, e.g., solvents and solutes [9

• ]. Actually, the presence of solutes consisting of water and proteins improves the stability of conformation 2. This stabilization is explained partly by the formation of hydrogen bonds between water molecules and PASE. Conformation 2 increases the number of sites where hydrogen bonds can form with water

• molecules because the chain portion of PASE turns upward. Therefore, the stabilization energy of hydrogen-bond formation is greater in conformation 2 than in conformation 1. To improve the stability of conformation 2, hydration effects by electrostatic interactions between PASE and the solvent are also

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• tackle catalyst stability by changing the chloride scavenger [23] or adding other coordinating moieties [24][25]. Hartwig et al. have argued that a Brønsted acid generated in situ from metal triflates may be the “real” catalyst promoting some alkene functionalizations [26]. Therefore, the possibility of

• other in the NMR spectrum. Although we observed reaction inhibition in a number of instances with [JPhosAu(NCCH3)]SbF6 we have never yet observed the formation of this byproduct. On the one hand, this is a testament to the high stability of gold supported by JPhos, on the other hand, it suggests as yet

• utilizing a dinuclear gold phosphine. These enhancements are likely correlated with increased catalyst stability. The earliest reports of alkene hydroamination revealed NHC’s and JPhos (t-Bu2)P(o-biphenyl) as the most active ligands [12][13][14], but this was in comparison to Ph3P which has since been

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• present in many agrochemical and pharmaceutical products owing to the beneficial properties imparted such as increased metabolic stability, lipophilicity and bioavailability of the bioactive entity [1][2][3]. In 2018, 30% of FDA approved drugs contained at least one fluorine atom, with an average of 2.7

Enhanced host–guest interaction between [10]cycloparaphenylene ([10]CPP) and [5]CPP by cationic charges

• Eiichi Kayahara,
• Yoshiyuki Mizuhata and
• Shigeru Yamago

Beilstein J. Org. Chem. 2024, 20, 436–444, doi:10.3762/bjoc.20.38

• -conjugated molecules, CPPs with shorter conjugations have lower oxidation potentials than larger CPPs, and the first and the second oxidation potentials of [5]CPP are by 0.69 and 0.51 V lower than those of [10]CPP, respectively [43]. The other is the stability of the CPP dications. Since the dications are

• . However, the low solubility and stability of the dication in polar solvents prevented confirmation of the solvent effect. To clarify the additional interaction in the complex, the electrochemical analysis of the [10]CPP⊃[5]CPP2+[B(C6F5)4–]2 was examined by using cyclic voltammetry, which was performed in

• transition corresponds to the CT band. The structure and stability of [10]CPP⊃[5]CPP2+ were estimated by DFT calculations at the ωB97-XD/6-31G* level of theory. Three isomeric structures were optimized, of which complex 1, with two CPPs aligned in parallel, is the most thermodynamically stable (Figure 5a

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• nanocompounds, instead picking graphene oxide (GO), due to its unique morphology and high chemical stability (Scheme 20) [112]. The graphene oxide was decorated with CuBr nanoparticles, which had already shown great catalytic potential, forming the GO–CuBr complex that was utilized for the synthesis of BIMs

• greatly diminished the conversion rates of BIMs, while replacing SDS with different surfactants had no effect on the reaction profile. Even though a large amount of 0.5 g of the LASSC nanocatalyst was employed, it displayed impressive stability, since it could be retrieved and reused upwards of 11 times

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• Carlos R. Azpilcueta-Nicolas Jean-Philip Lumb Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3A 0B8, Canada 10.3762/bjoc.20.35 Abstract Due to their ease of preparation, stability, and diverse reactivity, N-hydroxyphthalimide (NHPI) esters have found

• -hydroxyphthalimide (NHPI) esters (3) have emerged as convenient alternatives to Barton esters (Scheme 1) due in part to their ease of synthesis and greater stability (N–O BDE ≈ 75 kcal/mol) [28]. Their use as radical precursors was first described by Okada and colleagues in 1988 [29], who showed that C(sp3)-centered

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• ). This is also the basic compound used in the transformations that are studied in this work due to the high kinetic stability and good solubility ensured by the tert-butyl groups. The largest positive charge of the C(1)–C(2)–C(3) segment is concentrated at the C(2) atom. The charge at the other

• the geometry without imposing symmetry restrictions, followed by analyzing the stability of the DFT wave function. The images of the molecular structures in Figure 1 and Figure S6, Supporting Information File 1, were obtained using the Chemcraft program [35]. DFT-calculated molecular geometry (B3LYP/6

• and 6. Relative stability of the tautomers 7 and 7a,b of quinoxaline[2,3-b]phenoxazine calculated at the DFT B3LYP/6-311++G(d,p) level. Preparation of quinoxaline[2,3-b]phenoxazine (7) from 2-amino-3H-phenoxazin-3-one (8) [10] and 2-ethoxy-3H-phenoxazin-3-one (9) [11], respectively. Triphenodioxazine

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• the organic product along with inorganic species [41][42][43][44]. Over the years, many efforts were thus devoted to the synthesis of thiepine derivatives with increased thermal stability, with the aim to disfavor the formation of the transient thianorcaradiene intermediate as a way to prevent the

• stability. Conversely, selenepine 28c and selenepine Se-oxide 29c were quantitatively converted into the seco-HBC 31 by thermal activation at 200 °C for 5 min, as evidenced by UV–visible absorption and HPLC monitoring. SO-extrusion from thiepine S-oxide 29b was also successfully triggered in the solid state

• , as well as the oxidation state of the embedded chalcogen atom, allows controlling the stability of the heteropine, and thus its propensity to undergo thermal extrusion. Although beyond the scope of this review, it is noteworthy that the authors successfully converted the selenepine Se-oxide 29c into

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

• medical applications) and improving their stability, among other desirable properties. The most common reactions used to functionalize fullerenes are Diels–Alder and 1,3-dipolar cycloadditions and Bingel–Hirsch cyclopropanations [19][20]. In most cases, functionalization occurs while preserving the carbon

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• for compounds containing a quinoline fragment in various fields of research. At the same time, quinoline bases are a popular platform for the molecular design of polycyclic systems with receptor properties; they easily form proton complexes with high stability and selectivity [5][6]. This, in turn

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• + cations (500 equiv). At the same time, addition of TBA+ cations showed just a minimal impact on the stability of the Z-form comparable with the effect of counter anions and solvent polarity. In 2021, Tsubaki and co-workers synthesized bridged N,N′-dialkyl-substituted indigos 13 and studied their thermal

• '-dinitrobenzoylindigo 18b were provided by de Melo and co-workers in 2020 using modern femtosecond spectroscopic techniques as well as TD-DFT calculations [60]. In 1989, Takahashi and co-workers reported an important study of geometry and conformational stability of indigo and its N,N'-disubstituted derivatives [61][62

• zwitterionic resonance structures (Figure 3) increases in the excited state of indigo. This partial redistribution of charges, in turn, increases the electrostatic repulsion between the carbonyl groups in the Z-form (Figure 12) resulting in the larger energy gap between HOMO and LUMO and reduced stability for

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• disaccharide synthesis alongside C6-protected acceptors (2a or 2b in Figure 2) [10][11][14][15][37][38]. More recently, an innovative one-pot glycosylation approach using a (2,6-dichloro-4-methoxyphenyl)(2,4-dichlorophenyl)-protected glycosyl acceptor has been developed, demonstrating satisfactory stability

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• excellent yield and enantioselectivity. Keywords: asymmetric organocatalysis; chiral Brønsted acid; 3,3-difluoroindoline; Hantzsch ester; transfer hydrogenation; Introduction The introduction of fluoro atoms into organic molecules can alter their lipophilicity, solubility, metabolic stability, and

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• rotation values were measured with a PU-07 automatic digital polarimeter (Russia) at 28 °C in a jacketed glass cell (10 cm length). Special precautions were made to ensure the stability of the instrument and the temperature within the measuring compartment of the instrument and the cell, which was

• measurement of the quartz standards (to monitor the instrument stability). Each measurement at a particular concentration was repeated 10 times, then averaged and plotted against concentration. The standard deviations were calculated by using the Student’s distribution (95% probability) and did not exceed 1