On the aromaticity and photophysics of 1-arylbenzo[a]imidazo[5,1,2-cd]indolizines as bicolor fluorescent molecules for barium tagging in the study of double-beta decay of ¹³⁶Xe

• Eric Iván Velazco-Cabral,
• Fernando Auria-Luna,
• Juan Molina-Canteras,
• Miguel A. Vázquez,
• Iván Rivilla and
• Fernando P. Cossío

Beilstein J. Org. Chem. 2025, 21, 1627–1638, doi:10.3762/bjoc.21.126

• -phenylene moiety in the tetracyclic structure. Combination of reactions A and B in the form yields an average value of ⟨ΔEAB⟩ = −22.6 kcal/mol. A similar treatment of the separate components as outlined in reactions C and D shows a much lower stabilization energy for imidazo[1,2-a]pyridine 8 and a higher

• structure 1a is the less aromatic one, a result compatible with the formal anti-Hückel character of this structure, with 16 π-electrons if the central nitrogen atom is included in the electron counting. Peripheral structure 1b is formally Hückel aromatic since the lone pair of this atom is not considered

• , thus resulting in 14 π-electrons and a higher HOMA value. Finally, modular structure 1c includes formally separated components with six and ten π-electrons, both units being Hückel aromatic. This structure shows the highest HOMA and HOMAc values, which is in agreement with our conclusion from the

Transition-state aromaticity and its relationship with reactivity in pericyclic reactions

• Israel Fernández

Beilstein J. Org. Chem. 2025, 21, 1613–1626, doi:10.3762/bjoc.21.125

• transition structure of the Diels–Alder cycloaddition reaction between butadiene and ethylene “…Very qualitatively, we may say that whereas in the initial state the mobile electrons are those characteristics of an ethylene and a butadiene structure, in the TS they simulate the behavior of a benzene molecule

• that the gain in (in-plane) aromaticity in the parent reaction is not translated into a gain in stability (i.e., a more aromatic transition structure does not translate into a lower-barrier process). Following the same methodology, the ASM of reactivity was applied then to understand the reasons behind

Synthesis of optically active folded cyclic dimers and trimers

• Ena Kumamoto,
• Kana Ogawa,
• Kazunori Okamoto and
• Yasuhiro Morisaki

Beilstein J. Org. Chem. 2025, 21, 1603–1612, doi:10.3762/bjoc.21.124

• ]paracyclophanes via Wurtz-type intramolecular cyclization [3]. [2.2]Paracyclophane has a molecular structure in which two benzene rings are stacked face-to-face with ethylene chains at the para positions. Various studies have been conducted on their reactivities and physical properties derived from their unique

• molecular structure with stacked π-electron clouds [1][4][5][6]. The distance between benzene rings in [2.2]paracyclophane is extremely short (2.8–3.1Å), and thus the rotational motion of benzene rings is completely suppressed; therefore, planar chirality without chiral centers [7] appears by introducing

• luminescence (CPL) [22][23][24][25] with high photoluminescence (PL) quantum efficiency (ΦPL) and anisotropy. Additionally, the π-stacked structure of [2.2]paracyclophane can be applied at a crossing point. By folding the π-conjugated system using [2.2]paracyclophane as the chiral crossing unit, optically

Chemical synthesis of glycan motifs from the antitumor agent PI-88 through an orthogonal one-pot glycosylation strategy

• Shaokang Yang,
• Xingchun Sun,
• Hanyingzi Fan and
• Guozhi Xiao

Beilstein J. Org. Chem. 2025, 21, 1587–1594, doi:10.3762/bjoc.21.122

• trials for post-resection hepatocellular carcinoma [26]. Interestingly, Ferro and co-workers revised the structure of PI-88 to I and II in 2017 via successful separation of oligosaccharide phosphate fractions by preparative ion-exchange chromatography (Scheme 1A) [27]. Besides the major components α(1→3

Thermodynamic equilibrium between locally excited and charge transfer states in perylene–phenothiazine dyads

• Issei Fukunaga,
• Shunsuke Kobashi,
• Yuki Nagai,
• Hiroki Horita,
• Hiromitsu Maeda and
• Yoichi Kobayashi

Beilstein J. Org. Chem. 2025, 21, 1577–1586, doi:10.3762/bjoc.21.121

• . Although the PTZ unit adopts a bent structure in the ground state, it is known to undergo a structural transformation to a planar conformation upon excitation, as the planar geometry becomes more stable in the excited state. For instance, the planarization time constant of a phenyl-substituted

• phenothiazine derivative, 12-phenyl-12H-benzo[a]phenothiazine, in toluene at room temperature has been estimated to be 28 ps (with an additional minor 0.7 ps component attributed to small-scale structural changes) [17]. It is also noted that the relaxation dynamics depend on the molecular structure and the

• observed almost instantaneously. As the PTZ moiety relaxes from a nonplanar to a planar structure in the excited state, the transient absorption spectra evolve with time constants of several picoseconds and approximately 630–640 ps. During this process, the signal of the Pe radical anion gradually

pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

• Ryota Kimura,
• Satoshi Ichikawa and
• Akira Katsuyama

Beilstein J. Org. Chem. 2025, 21, 1568–1576, doi:10.3762/bjoc.21.120

• 060-0812, Japan 10.3762/bjoc.21.120 Abstract pH-Responsive molecular switches and motors are a class of organic molecules whose three-dimensional structure can be changed by acid–base stimuli. To date, pH-responsive molecular switches have been developed using various functional groups, but further

• substitution of an ortho-disubstituted benzamide (DiBA) increases the rotational barrier of the C–N and C–N/C–C concerted rotation (Figure 1a,b) [20]. The observation can be explained mainly by the double-bond nature of the chalcogen amide C–N bond, which is attributed to a zwitterionic resonance structure of

• chalcogen amide. It has been shown that a late periodic chalcogen amide has a lower energy π* orbital (C=S or C=Se), resulting in an increase in the contribution of the zwitterionic resonance structure [21][22][23]. Based on this consideration, an ortho-disubstituted benzamidine, which is generated by

Synthesis of an aza[5]helicene-incorporated macrocyclic heteroarene via oxidation of an o-phenylene-pyrrole-thiophene icosamer

• Yusuke Matsuo,
• Aoi Nakagawa,
• Shu Seki and
• Takayuki Tanaka

Beilstein J. Org. Chem. 2025, 21, 1561–1567, doi:10.3762/bjoc.21.119

• largest cyclic array in the series. The oxidative fusion reaction with [bis(trifluoroacetoxy)iodo]benzene (PIFA) afforded a cyclophane-type aza[5]helicene-incorporated macrocycle, the structure of which was unambiguously revealed by X-ray diffraction analysis. Its optical properties have been investigated

•  1) [6][7][8][9][10][11][12]. Nevertheless, partially fused macrocyclic intermediates are also important as they exhibit structural strain associated with both the polycyclic segments and the inherent strain stemming from the macrocyclic structure. For instance, cyclic chrysenylenes [13][14][15][16

• an aza[5]helicene-incorporated macrocycle. The resulting cyclophane-like structure and its optical properties have been analyzed in detail. Results and Discussion Synthesis and characterization Synthesis We obtained o-phenylene-pyrrole-thiophene hybrid icosamer 4 during our attempt to synthesize

Facile synthesis of hydantoin/1,2,4-oxadiazoline spiro-compounds via 1,3-dipolar cycloaddition of nitrile oxides to 5-iminohydantoins

• Juliana V. Petrova,
• Varvara T. Tkachenko,
• Victor A. Tafeenko,
• Anna S. Pestretsova,
• Vadim S. Pokrovsky,
• Maxim E. Kukushkin and
• Elena K. Beloglazkina

Beilstein J. Org. Chem. 2025, 21, 1552–1560, doi:10.3762/bjoc.21.118

• bioactive fragments into a single molecule through a spacer. An alternative strategy of combining heterocyclic pharmacophores is to incorporate them into a spiro-jointed structure that lacks any intermediate link between the active parts [17]. Despite the fact that these strategies share numerous

• form two new carbon–heteroatom bonds in a 1,2,4-oxadiazoline ring through both variants of orbital overlap. It should be noted that, in this case, NMR spectroscopy is not applicable to assign the product structure due to the presence of only quaternary carbon atoms in the tetrasubstituted 1,2,4

• -oxadiazolines [40]. Therefore, single crystal X-ray diffraction analysis is typically used to confirm the structure, as we have applied for the hydantoin/1,2,4-oxadiazoline spiro-compounds 5k (CCDC 2432465) and 5l (CCDC 2432466) (for details see Supporting Information File 1). The effect of the substituents on

Azide–alkyne cycloaddition (click) reaction in biomass-derived solvent Cyrene^TM under one-pot conditions

• Zoltán Medgyesi and
• László T. Mika

Beilstein J. Org. Chem. 2025, 21, 1544–1551, doi:10.3762/bjoc.21.117

• -triazoles in CyreneTM (Figure 4). It was shown that the protocol resulted in the formation of products 3a and 5b–f with yields of 57–91% depending on the structure of the bromide derivatives. The isolated yields were in the same range as reported by Citarella et al. [39]. The presence of a terminal carbon

• –carbon double bond in a certain molecular structure could allow for efficient subsequent functionalization via, for example, an addition reaction, opening possibilities for building even more complex molecular skeletons involving 1,2,3-triazole units. Using allyl bromide in the reaction sequence results

General method for the synthesis of enaminones via photocatalysis

• Paula Pérez-Ramos,
• Raquel G. Soengas and
• Humberto Rodríguez-Solla

Beilstein J. Org. Chem. 2025, 21, 1535–1543, doi:10.3762/bjoc.21.116

• components of drug derivative formulations, present in more than 7,000 active pharmaceutical compounds [43], the possibility of introducing a pyridine ring into the enaminone structure could be useful for the development of new drug candidates. When pyrrolidine was used as amine reagent, the target enaminone

Azobenzene protonation as a tool for temperature sensing

• Antti Siiskonen,
• Sami Vesamäki and
• Arri Priimagi

Beilstein J. Org. Chem. 2025, 21, 1528–1534, doi:10.3762/bjoc.21.115

• other transformations that can offer useful functionalities. These include ionization via protonation of one of the nitrogens forming the azo bond [12][13], azo–hydrazone tautomerization [14][15], and binding of analytes to side groups [16]. Such transformations depend on the azobenzene structure but

• complexes between 1–3 and MSA (X-MSA and X-(MSA)2, X = 1, 2 or 3). The geometry-optimized structure of 3H+MSA−MSA is shown in Figure 3. In this structure, the second MSA molecule does not bind directly to the azo group but forms a hydrogen bond with the mesylate anion, and one of its oxygen atoms interacts

• to account for the implicit solvation. Frequency calculations were performed for geometry-optimized structures to ensure that the structure was a true minimum energy structure (i.e., no imaginary frequencies). The molecular structures were visualized with ChemCraft version 1.8 (http

Calcium waste as a catalyst in the transesterification for demanding esters: scalability perspective

• Anton N. Potorochenko and
• Konstantin S. Rodygin

Beilstein J. Org. Chem. 2025, 21, 1520–1527, doi:10.3762/bjoc.21.114

• of δ-valerolactone (4e) successfully led to the opening of the ring structure of the lactone and the formation of methyl 5-hydroxypentanoate (5e) in 91% yield at a catalyst loading of 1 wt % and for 3 h. The transesterification of triglycerides obtained from the esterification of linear saturated C5

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Marcin Palusiak,
• Heinz Heimgartner,
• Marta Denel-Bobrowska and
• Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

• products formed via S–H and N–H insertion reactions should also be tested. This method of modification of the structure of enolizable 5-mercapto-1H-tetrazole has not yet been described. Results and Discussion New precursors 2c,d of sterically crowded thiocarbonyl S-methanides 1c,d Based on the well

• , the quality of the X-ray measurements and structure determination meets all high standards for reliable data. The same applies to the crystal data of 10i, even though its crystal structure contains four independent molecules per unit cell. These molecules exhibit slight differences in their geometry

• , ensuring that no additional symmetry elements were omitted during structure refinement. The obtained data undoubtedly confirmed the anticipated structures and their experimental characterizations. Thioaminal 9i and dithioacetal 10i differ significantly in the substitution of the tetrazole ring. This

Highly distinguishable isomeric states of a tripodal arylazopyrazole derivative on graphite through electron/hole-induced switching at ambient conditions

• Himani Malik,
• Sudha Devi,
• Debapriya Gupta,
• Ankit Kumar Gaur,
• Sugumar Venkataramani and
• Thiruvancheril G. Gopakumar

Beilstein J. Org. Chem. 2025, 21, 1496–1507, doi:10.3762/bjoc.21.112

• originating from a hexagonal type of lattice. To further understand the microscopic structure of the assembly, we have performed STM experiments on ultra-thin films of FNAAP. Figure 3a,b shows constant current STM topographs of ultra-thin films of an FNAAP adlayer on HOPG (0001) at different resolutions

• voltage, which is ≈1.1 V. This suggests that while switching, the molecules may not be in their neutral state. Since the graphite–molecule interaction is weak and van der Waals-type, we use the gas-phase calculations and no major change in the electronic structure is expected for molecules upon adsorption

• number, letter, etc. Depending on the state of the adjacent molecules in an array, one can assign a combination of states to address number, letters etc. Thus, in an array of 8 molecules, 88 permutations are possible. Conclusion We have investigated the microscopic structure and electron/hole-induced

Wittig reaction of cyclobisbiphenylenecarbonyl

• Taito Moribe,
• Junichiro Hirano,
• Hideaki Takano,
• Hiroshi Shinokubo and
• Norihito Fukui

Beilstein J. Org. Chem. 2025, 21, 1454–1461, doi:10.3762/bjoc.21.107

• formation between carbonyl and alkene units. Keywords: bathtub; chirality; cyclobisbiphenylenecarbonyl; figure-eight; Wittig reaction; Introduction Figure-eight π-conjugated molecules represent chiral macrocycles with a twisted crossover structure [1][2][3][4][5][6][7][8][9][10][11][12][13][14][15

• ]. Various figure-eight π-systems including aromatic hydrocarbons, belt-type extended π-systems, and porphyrinoids have been reported. The structural twisting in figure-eight macrocycles leads to cross-linked conjugation at the molecular center and a highly symmetric chiral structure with D2-symmetry

• stable figure-eight conformation A to a metastable bathtub conformation B with a small energy difference of approximately 2 kcal mol–1 [21]. In this paper, we discuss the effect of the transformation of the carbonyl groups on the conformational change of the figure-eight structure. We thus intentionally

Advances in nitrogen-containing helicenes: synthesis, chiroptical properties, and optoelectronic applications

• Meng Qiu,
• Jing Du,
• Nai-Te Yao,
• Xin-Yue Wang and
• Han-Yuan Gong

Beilstein J. Org. Chem. 2025, 21, 1422–1453, doi:10.3762/bjoc.21.106

• helicenes. Particular attention is given to multi-heteroatom systems co-doped with elements such as boron, oxygen, sulfur, and selenium, highlighting their influence on CPL performance and structure–property relationships. We classify the nitrogen-doped helicenes into only N-containing helicenes, B,N

Tautomerism and switching in 7-hydroxy-8-(azophenyl)quinoline and similar compounds

• Lidia Zaharieva,
• Vera Deneva,
• Fadhil S. Kamounah,
• Nikolay Vassilev,
• Ivan Angelov,
• Michael Pittelkow and
• Liudmil Antonov

Beilstein J. Org. Chem. 2025, 21, 1404–1421, doi:10.3762/bjoc.21.105

• substitution in 7-OH quinoline, where the most of the requirements for clean switching are achieved if the K tautomer is considered as off-state and the E one as on-state. Experimental Synthesis and structure elucidation Materials The starting reagents and solvents were purchased from Sigma-Aldrich and

• M06-2X [96][97] functional with the TZVP [98] basis set was used for the structure optimizations in the ground state. The use of M06-2X provides very good predictability in the ground state [51][53][99][100][101][102][103] of the tautomeric composition in tautomeric compounds and proton cranes as well

Reactions of acryl thioamides with iminoiodinanes as a one-step synthesis of N-sulfonyl-2,3-dihydro-1,2-thiazoles

• Vladimir G. Ilkin,
• Pavel S. Silaichev,
• Valeriy O. Filimonov,
• Tetyana V. Beryozkina,
• Margarita D. Likhacheva,
• Pavel A. Slepukhin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2025, 21, 1397–1403, doi:10.3762/bjoc.21.104

• analogy with an aza-Michael reaction first with the addition of iminoiodinane accompanied with reorganization of double bonds including attack of the negatively charged sulfur atom on nitrogen with subsequent elimination of iodobenzene as good leaving group. The diversity of the structure of the target

• 2,3-dihydro-1,2-thiazole ring are in the range of 75.3–72.4 ppm and signals of the carbon atom of the cyano group in the range of 117.7–116.6 ppm. The structure of 2,3-dihydro-1,2-thiazole 3aa was additionally confirmed by single crystal X-ray diffraction (Figure 2). According to the X-ray diffraction

• (1.5 mL) was added dropwise. The reaction vessel was removed from the ice bath and the reaction mass was stirred for 10–30 min, then transferred to a silica gel column and the corresponding 2-sulfonyl-1,3-thiazole 3 was isolated. X-ray structure determination of 3aa. Crystal data for C21H21N3O3S2 (M

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• human system. In this study, we isolated two previously undescribed N-salicyl-amino acids as natural products (1 and 2) and other two new derivatives (3 and 4) from the organic extract of a culture broth in a modified starch–glucose–glycerol (SGG) medium of Pseudomonas sp. UIAU-6B. The structure of the

• to C-10 showing the presence of the carboxyl functionality of the threonine moiety. Based on this conclusion, the structure of 1 was elucidated and named pseudomonin D. Compound 2 was obtained as a reddish oil, and the molecular formula deduced as C16H20N4O4 (Δ: +0.4 ppm, calcd. for C16H21N4O4

• Supporting Information File 1, Figure S16) confirming that both of these protons were present on the same side of the double bond. The structure of 3 was confirmed using mass spectrometry, 1D and 2D NMR data as a new compound, named pseudomonin F. Compound 4 was isolated as a pink oil. The negative mode

Oxetanes: formation, reactivity and total syntheses of natural products

• Peter Gabko,
• Martin Kalník and
• Maroš Bella

Beilstein J. Org. Chem. 2025, 21, 1324–1373, doi:10.3762/bjoc.21.101

• substrate scope revealed that the reaction stereoselectivity is highly dependent on the structure of the ketoester component and tends to be unpredictable. 1.3.2 Formal cycloadditions: These stepwise processes typically take place between an enolate or enol ether and a carbonyl under Lewis acid or base

Recent advances and future challenges in the bottom-up synthesis of azulene-embedded nanographenes

• Bartłomiej Pigulski

Beilstein J. Org. Chem. 2025, 21, 1272–1305, doi:10.3762/bjoc.21.99

• ], medicine [3], sensing [4] and energy storage [5]. Typically, bulk graphene is obtained using a top-down approach, where graphite is exfoliated using chemical or mechanical methods [6][7]. However, this method does not provide precise control over the structure of graphene and graphenoid materials, which is

• crucial for fine-tuning their properties. An alternative is the bottom-up approach where various nanographenes are synthesized form smaller building blocks via classical organic synthesis. This strategy enables precise control over the structure and topology, leading to the development of a vast array of

• benzenoid nanographenes, also known as polycyclic aromatic hydrocarbons (PAHs) [8][9]. PAHs can be considered molecular models of bulk graphene, offering invaluable insights into structure–property relationships in graphene and graphene-based materials. Structural defects appear to be inevitable in real

Selective monoformylation of naphthalene-fused propellanes for methylene-alternating copolymers

• Kenichi Kato,
• Tatsuki Hiroi,
• Seina Okada,
• Shunsuke Ohtani and
• Tomoki Ogoshi

Beilstein J. Org. Chem. 2025, 21, 1183–1191, doi:10.3762/bjoc.21.95

• % probably owing to the network structure. By contrast, soluble [3.3.3]_oligo and [3.3.3]_linear had relatively high T90 of 528–532 °C and CY of 68–76 wt %. The high values were ascribed to two unsubstituted naphthalene rings in precursor [3.3.3]_CH2OH, which caused facile branching in the reaction or

Enhancing chemical synthesis planning: automated quantum mechanics-based regioselectivity prediction for C–H activation with directing groups

• Julius Seumer,
• Nicolai Ree and
• Jan H. Jensen

Beilstein J. Org. Chem. 2025, 21, 1171–1182, doi:10.3762/bjoc.21.94

• structure on the potential energy surface is located, which can be done straightforwardly using standard optimization algorithms. While the use of intermediate energies provides a computationally efficient alternative to explicit transition state searches, it rests on the assumption that there is a

• the transition state [10][11]. The site with the lowest reaction energy is expected to correspond to the experimentally observed reaction site. Therefore, instead of locating the structure of the transition state, the preceding palladacycle intermediate structure is generated and optimized, as shown

• carbon at the reaction site and to the heteroatom of the directing group, as illustrated in Figure 5. To assess the geometry of these complexes, we generate a 2D structure using RDKit, where all atoms are constrained to lie in a single plane. Although this type of 2D embedding is typically used only for

A multicomponent reaction-initiated synthesis of imidazopyridine-fused isoquinolinones

• Ashutosh Nath,
• John Mark Awad and
• Wei Zhang

Beilstein J. Org. Chem. 2025, 21, 1161–1169, doi:10.3762/bjoc.21.92

• , Supporting Information File 1), but it was not stable enough for isolation. The structure of 8a was confirmed by single crystal X-ray diffraction analysis. The optimized reaction conditions were used to evaluate the substrate scope of the synthesis of imidazopyridine-fused isoquinolinones 8 (Scheme 3). The

• the dienophile presents a negative charge (−0.280 to −0.325, 6a), (−0.280 to −0.327, 6h) and (−0.280 to −0.327, 6r), respectively. This structure induces electrostatic repulsion instead of the requisite attraction for a successful interaction between the electron-rich diene and the electron-deficient

• detected by LC–MS from the reaction mixture. The X-ray structure of 6t indicated that the diene and dienophile are perpendicular to each other which prevents them from being properly aligned for the IMDA reaction. The transition state of the IMDA is electronically destabilized by the sulfur group of the

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• a cancer therapeutic, exhibiting anti-inflammatory, anti-angiogenic, antimicrobial, antifungal, and antimalarial activities. While Keller-Schierlein first determined its chemical structure, Anderson later confirmed its absolute configuration using X-ray crystallography [16]. During the screening of

• complex structure, remains an attractive target for synthetic organic chemists worldwide. Several comprehensive reviews on borrelidin have been published, with a strong focus on its synthesis. The first notable comparison of total synthesis methods was conducted by Ōmura in 2005 [48], highlighting four

• LiAlH4 in ether to form alcohol 40 (89%) (Scheme 3). The primary alcohol 40 was then converted to its iodide derivative 42 (89%), from which single crystals were obtained, and its structure was determined unequivocally by XRD crystallography. Iodide 42 was then reacted with sodium phenylsulfinate in DMF