Rapid and sensitive detection of box turtles using an electrochemical DNA biosensor based on a gold/graphene nanocomposite

• Abu Hashem,
• M. A. Motalib Hossain,
• Ab Rahman Marlinda,
• Mohammad Al Mamun,
• Khanom Simarani and
• Mohd Rafie Johan

Beilstein J. Nanotechnol. 2022, 13, 1458–1472, doi:10.3762/bjnano.13.120

• Southeast Asian box turtle, Cuora amboinensis, is an ecologically important endangered species which needs an onsite monitoring device to protect it from extinction. An electrochemical DNA biosensor was developed to detect the C. amboinensis mitochondrial cytochrome b gene based on an in silico designed

• electrochemical impedance spectroscopy. The thiol-modified synthetic DNA probe was immobilised on modified SPCEs to facilitate hybridisation with the reverse complementary DNA. The turtle DNA was distinguished based on hybridisation-induced electrochemical change in the presence of methylene blue compared to

• their mismatches, noncomplementary, and nontarget species DNA measured by DPV. The developed biosensor exhibited a selective response towards reverse complementary DNAs and was able to discriminate turtles from other species. The modified electrode displayed good linearity for reverse complementary DNAs

Studies of probe tip materials by atomic force microscopy: a review

• Ke Xu and
• Yuzhe Liu

Beilstein J. Nanotechnol. 2022, 13, 1256–1267, doi:10.3762/bjnano.13.104

• quenched the fluorescence of DNA-templated silver nanoclusters (DNA-AgNCs), while the strong chelation between glyphosate and Cu2+ restored the fluorescence of the nanoclusters. The method showed good linearity in the concentration range of 1 ng/mL–50 ng/mL, and the detection limit reached 0.2 ng/mL. In

• target nanotubes to Si tips under scanning electron microscopy; and attaching nanotubes to Si tips by carbon deposition. The strong adhesion of carbon deposition produces nanotube tips capable of surviving multiple surface collisions. The ability to image the fine structure of double-stranded DNA

• chloramphenicol based on a vesicular quantum dot-gold colloid composite probe. They successfully developed a fluorescence resonance energy transfer (FRET) based on chloramphenicol (CAP) detection in food. Vesicular nano tracers were prepared by labeling single-stranded DNA-binding proteins on single-stranded

Design of surface nanostructures for chirality sensing based on quartz crystal microbalance

• Yinglin Ma,
• Xiangyun Xiao and
• Qingmin Ji

Beilstein J. Nanotechnol. 2022, 13, 1201–1219, doi:10.3762/bjnano.13.100

• forms (enantiomers) that are mirror images of each other. It is a mysterious phenomenon that almost all chiral molecules in living organisms are found in one form, such as right-handed sugars, left-handed amino acids, and right-handed DNA coils. Scientists coined the term “homochirality” to describe

• (e.g., DNA analysis, microorganism assays, nucleic acid detection, pharmaceutical substance detection, and gas monitoring) and also a powerful tool for chiral recognition [23][24][25]. The sensitivity and specificity of QCM-based chiral sensors largely depend on the recognition layers on the surface of

Green synthesis of zinc oxide nanoparticles toward highly efficient photocatalysis and antibacterial application

• Vo Thi Thu Nhu,
• Nguyen Duy Dat,
• Le-Minh Tam and
• Nguyen Hoang Phuong

Beilstein J. Nanotechnol. 2022, 13, 1108–1119, doi:10.3762/bjnano.13.94

• , proteins, DNA, and amino acids [39][40][41]. The O2 causes biomembrane oxidation reactions, damaging tissues [42]. Furthermore, it is reasonable to explain that the additional toxicity that causes bacterial death is due to the fact that zinc solubilization releases Zn2+ ions which can infiltrate into

Recent advances in green carbon dots (2015–2022): synthesis, metal ion sensing, and biological applications

• Aisha Kanwal,
• Naheed Bibi,
• Sajjad Hyder,
• Arif Muhammad,
• Hao Ren,
• Jiangtao Liu and
• Zhongli Lei

Beilstein J. Nanotechnol. 2022, 13, 1068–1107, doi:10.3762/bjnano.13.93

• ]. Godavarthi et al. used seaweed (Sargassum fluitans) to synthesize N-CDs. 1H NMR and 13C NMR were used to analyze Sargassum fluitans and showed that amino acids acted as a nitrogen source, for the preparation of N-CDs. The reported N-CDs were used as a fluorescence probe to detect DNA, and gel electrophoresis

Influence of water contamination on the sputtering of silicon with low-energy argon ions investigated by molecular dynamics simulations

• Grégoire R. N. Defoort-Levkov,
• Alan Bahm and
• Patrick Philipp

Beilstein J. Nanotechnol. 2022, 13, 986–1003, doi:10.3762/bjnano.13.86

• MD/binary collision approximation (BCA) simulations. ReaxFF simulations can cover a broad range of applications: from DNA molecule bombardments with heavy atoms [31] to graphene layer deposition on copper surfaces [32]. Numerous simulations using the ReaxFF potential have been conducted in the past

DNA aptamer selection and construction of an aptasensor based on graphene FETs for Zika virus NS1 protein detection

• Nathalie B. F. Almeida,
• Thiago A. S. L. Sousa,
• Viviane C. F. Santos,
• Camila M. S. Lacerda,
• Thais G. Silva,
• Rafaella F. Q. Grenfell,
• Flavio Plentz and
• Antero S. R. Andrade

Beilstein J. Nanotechnol. 2022, 13, 873–881, doi:10.3762/bjnano.13.78

• the target [17]. The CE separation efficiency allows for high-affinity aptamers to be obtained with only three to five rounds. Our present study demonstrates, for the first time, the application of CE-SELEX to obtain DNA aptamers for the ZIKV NS1 protein. In particular, the ZIKV60 aptamer (patent

• , and T at each position and was purchased from IDT DNA Technologies [18]. CE-SELEX Three CE-SELEX selection cycles were performed. To initiate in vitro selection, 800 μM ssDNA was heated at 95 °C for 5 min, snap-cooled on ice for 15 min and left at room temperature for 10 min. After that, it was

• , 0.2 μM forward primer (5′-CTTCTGCCCGCCTCCTTCC-3′), 0.2 μM reverse primer (5′-AGTGTCCGCCTATCTCGTCTCC-3′), 1 U Taq DNA polymerase high fidelity (Invitrogen), and 50 mM MgSO4 in 1× high fidelity PCR buffer. The PCR thermocycling parameters were 94 °C for 2 min for denaturation followed by 17 cycles of

Optimizing PMMA solutions to suppress contamination in the transfer of CVD graphene for batch production

• Chun-Da Liao,
• Andrea Capasso,
• Tiago Queirós,
• Telma Domingues,
• Fatima Cerqueira,
• Nicoleta Nicoara,
• Jérôme Borme,
• Paulo Freitas and
• Pedro Alpuim

Beilstein J. Nanotechnol. 2022, 13, 796–806, doi:10.3762/bjnano.13.70

• electrolyte-gated graphene field-effect transistors (GFETs, Figure 5) designed to operate as DNA biosensors. Two batches of GFETs having a topmost graphene channel (75 µm width × 25 µm length) were fabricated (see details in Supporting Information File 1). In the first batch [37][38] (including 1755 GFETs

Recent advances in nanoarchitectures of monocrystalline coordination polymers through confined assembly

• Lingling Xia,
• Qinyue Wang and
• Ming Hu

Beilstein J. Nanotechnol. 2022, 13, 763–777, doi:10.3762/bjnano.13.67

• coordination polymers as envelopes for the bio-entities. On the basis of the sensitive coordination bonds, the stored bio-entities may be released from solution triggered by pH value or other factors. In 2015, Falcaro et al. demonstrated that monocrystalline ZIF-8 can take up proteins, enzymes, and DNA [104

• macropore. THF is tetrahydrofuran. (b) SEM image of SOM-ZIF-8. (c) Representative SEM images of SOM-ZIF-8. Figure 5 is from [117]. Reprinted with permission from AAAS. This content is not subject to CC BY 4.0. Schematic illustration of a superlattice assembled by DNA-functionalized UiO-66 nanoparticles

A nonenzymatic reduced graphene oxide-based nanosensor for parathion

• Sarani Sen,
• Anurag Roy,
• Ambarish Sanyal and
• Parukuttyamma Sujatha Devi

Beilstein J. Nanotechnol. 2022, 13, 730–744, doi:10.3762/bjnano.13.65

• after pesticide use. Due to its high nondegradability, pesticides can stay more often on the surface of fruits and vegetables; sometimes, it can also penetrate into the peel of vegetables and fruits [1]. Organophosphorus insecticides react with biomolecules either via deoxyribonucleic acid (DNA

Antibacterial activity of a berberine nanoformulation

• Hue Thi Nguyen,
• Tuyet Nhung Pham,
• Anh-Tuan Le,
• Nguyen Thanh Thuy,
• Tran Quang Huy and
• Thuy Thi Thu Nguyen

Beilstein J. Nanotechnol. 2022, 13, 641–652, doi:10.3762/bjnano.13.56

• bacterial cell membrane and inhibiting the synthesis of proteins and DNA [15]. Chu et al. [16] reported that BBR showed no antibacterial activity against methicillin-resistant Staphylococcus aureus (MRSA) in the range of concentrations from 1 to 64 µg/mL. However, inhibition of MRSA biofilm formation was

Detection and imaging of Hg(II) in vivo using glutathione-functionalized gold nanoparticles

• Gufeng Li,
• Shaoqing Li,
• Rui Wang,
• Min Yang,
• Lizhu Zhang,
• Yanli Zhang,
• Wenrong Yang and
• Hongbin Wang

Beilstein J. Nanotechnol. 2022, 13, 549–559, doi:10.3762/bjnano.13.46

• cancer cells. In another work, Basu et al. designed a novel sensing system using DNA-functionalized GNPs. GNPs have a strong binding affinity to phosphate and sugar groups in DNA [20]. The combined GNPs-DNA has unique physicochemical properties and was used to detect Mg2+. Furthermore, Liu et al

Tubular glassy carbon microneedles with fullerene-like tips for biomedical applications

• Sharali Malik and
• George E. Kostakis

Beilstein J. Nanotechnol. 2022, 13, 455–461, doi:10.3762/bjnano.13.38

• research. R. E. Franklin, best known for her poorly acknowledged role in discovering the structure of DNA, formulated the first structural models for what is now known as glassy carbon and coined the terms “graphitizing” and “non-graphitizing carbons” to describe these materials in the 1940s [2][3]. B

Alcohol-perturbed self-assembly of the tobacco mosaic virus coat protein

• Ismael Abu-Baker and
• Amy Szuchmacher Blum

Beilstein J. Nanotechnol. 2022, 13, 355–362, doi:10.3762/bjnano.13.30

• ]. Biological scaffolds can be programmed through predictable chemical interactions, such as DNA base pairing, disulfide bond formation, and metal coordination, to form complex, well-defined nanostructures [5][6]. Viruses and virus-like particles (VLPs) possess many advantageous properties for biotemplating

Engineered titania nanomaterials in advanced clinical applications

• Padmavati Sahare,
• Paulina Govea Alvarez,
• Juan Manual Sanchez Yanez,
• Gabriel Luna-Bárcenas,
• Samik Chakraborty,
• Sujay Paul and
• Miriam Estevez

Beilstein J. Nanotechnol. 2022, 13, 201–218, doi:10.3762/bjnano.13.15

• excretion [33]. When a TiO2 nanomaterial circulates through the body, certain biomolecules (such as proteins, phospholipids, or DNA contained in biological fluids or present in living cells) get adsorbed onto the surface of it very quickly, which is termed as “protein corona (PC)” formation. This protein

• alterations of coenzyme A-dependent enzyme activities and DNA damaging via hydroxyl radicals [80]. Furthermore, DNA is sensitive to oxidative damage. In particular, OH* produced by a Fenton reaction attacks the sugar–phosphate backbone leading to the strand break [81]. Interestingly, due to the efficacy of

• nanoparticles. TiO2 acts as a DNA intercalator in the cytoplasm, causing DNA damage by generating reactive oxygen species. The explicit cytotoxicity evaluation of TiO2, as well as of the incorporated drug molecules, is a major research concern. Moreover, optimal fabrication, in-depth mechanical stability

Bacterial safety study of the production process of hemoglobin-based oxygen carriers

• Axel Steffen,
• Yu Xiong,
• Radostina Georgieva,
• Ulrich Kalus and
• Hans Bäumler

Beilstein J. Nanotechnol. 2022, 13, 114–126, doi:10.3762/bjnano.13.8

• inhibit DNA synthesis in bacteria, and similar effects are also seen on RNA and protein syntheses [44][45]. In addition, glutaraldehyde particularly acts on the outer layers of E. coli and cross-links lipoproteins and proteins there as well. This fixation of bacteria prevents the bacterial cells from

Theranostic potential of self-luminescent branched polyethyleneimine-coated superparamagnetic iron oxide nanoparticles

• Rouhollah Khodadust,
• Ozlem Unal and
• Havva Yagci Acar

Beilstein J. Nanotechnol. 2022, 13, 82–95, doi:10.3762/bjnano.13.6

• -stranded PIC, this solution was heated to 55 °C then cooled back to room temperature according to the instructions from the manufacturer. As DNA plasmids, GFP plasmids (16542: pBI-MCS-EGFP) were purchased from Addgen, propagated in DH5α competent E. coli bacteria, and purified using the QIAGEN EndoFree

• Plasmid Maxi kit. For this purpose, first the bacteria were cultured in Luria–Bertani agar for single colony selection. The obtained colonies were then grown in Luria–Bertani broth growth medium. Later, the GFP plasmid DNA was isolated from these cells using the QIAGEN Plasmid DNA isolation kit and

• -EDTA (TBE) (Alfa Aesar, USA) buffer and boiled at 100 °C. After cooled down to 70 °C, 4 µL of ethidium bromide (10 mg/mL) was added and the gel was poured into a gel electrophoresis unit. A volume of 50 µL of the solutions containing 4 µg of PIC were mixed with 5 µL of a 6× DNA gel-loading buffer

Alteration of nanomechanical properties of pancreatic cancer cells through anticancer drug treatment revealed by atomic force microscopy

• Xiaoteng Liang,
• Shuai Liu,
• Xiuchao Wang,
• Dan Xia and
• Qiang Li

Beilstein J. Nanotechnol. 2021, 12, 1372–1379, doi:10.3762/bjnano.12.101

• ultrastructure of living cells [15][16], cell membranes, membrane proteins [17][18] and DNA [19], and through recording single molecular force spectra [20][21]. However, the morphology and the nanoscale mechanical properties of malignant pancreatic cancer cells (PCCs) under anticancer drug treatment have not

Biocompatibility and cytotoxicity in vitro of surface-functionalized drug-loaded spinel ferrite nanoparticles

• Sadaf Mushtaq,
• Khuram Shahzad,
• Tariq Saeed,
• Anwar Ul-Hamid,
• Bilal Haider Abbasi,
• Nafees Ahmad,
• Waqas Khalid,
• Muhammad Atif,
• Zulqurnain Ali and
• Rashda Abbasi

Beilstein J. Nanotechnol. 2021, 12, 1339–1364, doi:10.3762/bjnano.12.99

• . The nanoparticles caused cytotoxicity via oxidative stress, causing DNA damage and activation of p53-mediated cell cycle arrest (significantly elevated expression, p < 0.005, majorly G1 and G2/M arrest) and apoptosis. Cytotoxicity testing in 3D spheroids showed significant (p < 0.05) reduction in

• biocompatibility of NPs-PMA at a given dose and treatment time. Cells undergo oxidative stress upon treatment with functionalized MFe2O4 NPs Generation of ROS has been associated with DNA damage, inflammation, apoptosis and senescence in cells [41]. The 2',7'-dichlorodihydrofluorescein diacetate (H2-DCFDA) assay

• ). Several studies have indicated that spinel ferrite MFe2O4 (M = Fe, Co, Ni, Zn) NPs cause cytotoxicity via oxidative stress which results in damage to the cell membrane, proteins, and DNA [41][42][43]. However, how NPs are processed inside the cell is also a contributing factor in ROS production [44]. For

Morphology-driven gas sensing by fabricated fractals: A review

• Vishal Kamathe and
• Rupali Nagar

Beilstein J. Nanotechnol. 2021, 12, 1187–1208, doi:10.3762/bjnano.12.88

• fractal [39][40]. Figure 1 shows various fractal geometries found in nature. Complex patterns seen in human lungs, lines on the surface of human brains, neuron distribution, molecular chains of proteins, and DNA structures with double helix are described by fractal geometries [41]. Ice crystals

Self-assembly of amino acids toward functional biomaterials

• Huan Ren,
• Lifang Wu,
• Lina Tan,
• Yanni Bao,
• Yuchen Ma,
• Yong Jin and
• Qianli Zou

Beilstein J. Nanotechnol. 2021, 12, 1140–1150, doi:10.3762/bjnano.12.85

• biomolecules, such as proteins, peptides, and DNA have received extensive attention in recent years [86]. Liu et al. [87] used electrostatic force to adsorb tetrakis(4-sulfonatophenyl)porphine (TPPS) molecules on the surface of 9-fluorenylmethoxycarbonyl-ʟ-lysine (Fmoc-ʟ-Lys) self-assembled nanofibers such

pH-driven enhancement of anti-tubercular drug loading on iron oxide nanoparticles for drug delivery in macrophages

• Karishma Berta Cotta,
• Sarika Mehra and
• Rajdip Bandyopadhyaya

Beilstein J. Nanotechnol. 2021, 12, 1127–1139, doi:10.3762/bjnano.12.84

• release, too [15]. Fluoroquinolones, a class of broad-spectrum DNA gyrase inhibiting antibiotics, are used as therapeutics for many intracellular pathogens [16][17][18][19][20]. Recently, they have been explored for their activity as an anti-TB drug [16][17]. Currently, they are used as second-line anti

Use of nanosystems to improve the anticancer effects of curcumin

• Andrea M. Araya-Sibaja,
• Norma J. Salazar-López,
• Krissia Wilhelm Romero,
• José R. Vega-Baudrit,
• J. Abraham Domínguez-Avila,
• Carlos A. Velázquez Contreras,
• Ramón E. Robles-Zepeda,
• Mirtha Navarro-Hoyos and
• Gustavo A. González-Aguilar

Beilstein J. Nanotechnol. 2021, 12, 1047–1062, doi:10.3762/bjnano.12.78

• superparamagnetic iron oxide nanoparticles functionalized with sodium dodecyl sulfate (SDS) and coated with chitosan (40–45 nm), were able to induce apoptosis (IC50 30 µg/mL) in HeLa (cervical cancer) cells by damaging the DNA and increasing caspase-3 [136]. Curcumin-loaded, pH-sensitive Janus magnetic mesoporous

• ][30][31][32][33][34][35][36][37][38]. Carcinoembryonic antigen (CEA); vascular endothelial growth factor (VEGF); cancer antigen 15.3 (CA15.3); DNA adduct 3-(2-deoxy-β-di-erythro-pentafuranosyl)pyrimido[1,2-α]purin-10(3H)-one (M1G); enzyme cyclooxygenase-2 (COX-2); colorectal aberrant crypt foci (ACF

An overview of microneedle applications, materials, and fabrication methods

• Zahra Faraji Rad,
• Philip D. Prewett and
• Graham J. Davies

Beilstein J. Nanotechnol. 2021, 12, 1034–1046, doi:10.3762/bjnano.12.77

• incorporated drug. A wide range of molecules including the anthrax vaccine [26], aminolevulinic acid [27], calcein [28], erythropoietin [29], bovine serum albumin [30][31], ovalbumin [32], insulin [33][34], and plasmid DNA [35] have been transdermally delivered using microneedles of various designs, aimed at a

The role of deep eutectic solvents and carrageenan in synthesizing biocompatible anisotropic metal nanoparticles

• Nabojit Das,
• Akash Kumar and
• Raja Gopal Rayavarapu

Beilstein J. Nanotechnol. 2021, 12, 924–938, doi:10.3762/bjnano.12.69

• nanoparticles in different biological systems (liver, spleen, and kidney) of Wistar rats was observed [70]. The study revealed that gold nanoparticles of 10 nm size exhibited an oxidation-induced deleterious effect evident through nuclear localization and greater DNA damage. Despite oxidative imbalance induced