Acyclic cucurbit[n]uril bearing alkyl sulfate ionic groups

• Christian Akakpo,
• Peter Y. Zavalij and
• Lyle Isaacs

Beilstein J. Org. Chem. 2025, 21, 717–726, doi:10.3762/bjoc.21.55

• tube and centrifuged (7200 rpm, 5 min). The supernatant was carefully poured off. Next, the crude solid was dissolved in 1 M NaOH (25 mL) which results in a yellow and then red solution. Afterwards, EtOH (144 mL) was added which gave a white precipitate that was collected by centrifugation (7200 rpm

• ), b) a mixture of C1 (0.5 mM) and Me6PXDA (1.0 mM), c) a mixture of C1 (0.5 mM) and Me6PXDA (0.5 mM), and d) C1 (0.5 mM). Cross-eyed stereoview of the C1·Me6CHDA complex in the crystal. Color code: C, gray; H, white; N, blue; O, red; S, yellow. Cross-eyed stereoview of the crystal packing observed in

• the molecular cell of C1·Me6CHDA. H-atoms are omitted for clarity. N···O distances less than 4.40 Å are indicated with dashed lines. Color code: C, gray; N, blue; O, red; S, yellow. a) Representative plot of DP (μcal s−1) versus time from the titration of C1 (0.1 mM) in the ITC cell with a solution of

Photochemically assisted synthesis of phenacenes fluorinated at the terminal benzene rings and their electronic spectra

• Yuuki Ishii,
• Minoru Yamaji,
• Fumito Tani,
• Kenta Goto,
• Yoshihiro Kubozono and
• Hideki Okamoto

Beilstein J. Org. Chem. 2025, 21, 670–679, doi:10.3762/bjoc.21.53

• systematically red-shifted by ca. 3–5 nm compared to those of the corresponding parent phenacenes. The vibrational progressions of the absorption and fluorescence bands were little affected by the fluorination in the solution phase. In the solid state, the absorption band of F8-phenacenes appeared in the similar

• wavelength region for the corresponding parent phenacenes whereas their fluorescence bands markedly red-shifted and broadened. These observations suggest that the intermolecular interactions of excited-state F8-phenacene molecules are significantly different from those of the corresponding parent molecules

• -intensity band at 376–393 nm and a moderate-intensity one at 333–347 nm were observed for all compounds studied. The former and the latter absorption bands are, respectively, assigned to the α- and p-bands according to Clar’s description [50]. The absorption bands only slightly red-shifted upon the π

Asymmetric synthesis of fluorinated derivatives of aromatic and γ-branched amino acids via a chiral Ni(II) complex

• Maurizio Iannuzzi,
• Thomas Hohmann,
• Michael Dyrks,
• Kilian Haoues,
• Katarzyna Salamon-Krokosz and
• Beate Koksch

Beilstein J. Org. Chem. 2025, 21, 659–669, doi:10.3762/bjoc.21.52

• precipitated product was filtered, washed with H2O (20 mL), and dried in vacuo at 60 °C. The crude material was purified by flash column chromatography (SiO2, 10 → 100% EtOAc in diethyl ether) to yield 7 as a red solid (10.7 g, 12.9 mmol, 78%, 99% purity determined by analytical HPLC). 1H NMR (600 MHz, CDCl3

• chromatography (chloroform/acetone, 3:1) to yield to 11a (2S,4R) (1.18 g, 1.7 mmol, 39%) and 11b (2S,4S) (0.87 g, 1.22 mmol, 29%) as red solids. 11a: 1H NMR (600 MHz, CDCl3) δ 8.86 (s, 1H), 8.00 (d, J = 9.2 Hz, 1H), 7.75 (d, J = 8.2 Hz, 1H), 7.62–7.46 (m, 3H), 7.35 (d, J = 8.1 Hz, 1H), 7.30 (d, J = 7.4 Hz, 1H

Photocatalyzed elaboration of antibody-based bioconjugates

• Marine Le Stum,
• Eugénie Romero and
• Gary A. Molander

Beilstein J. Org. Chem. 2025, 21, 616–629, doi:10.3762/bjoc.21.49

• reaction time minimizes this risk by allowing the reaction to proceed quickly and efficiently before damage occurs. To avoid damage caused by high energy wavelength, the use of irradiation in the red region could be considered [62][63][64][65]. Aqueous media: Developing photoredox reactions compatible with

Binding of tryptophan and tryptophan-containing peptides in water by a glucose naphtho crown ether

• Gianpaolo Gallo and
• Bartosz Lewandowski

Beilstein J. Org. Chem. 2025, 21, 541–546, doi:10.3762/bjoc.21.42

• 1 (1:1); bottom – receptor 1; the dotted black lines indicate shifts of the proton signals upon complex formation and dotted red lines indicate lack of signal shift. Proposed binding mode of receptor 1 to tripeptide 2. Binding affinities of receptor 1 to amino acids determined by ITC experiments and

Deep-blue emitting 9,10-bis(perfluorobenzyl)anthracene

• Long K. San,
• Sebastian Balser,
• Brian J. Reeves,
• Tyler T. Clikeman,
• Yu-Sheng Chen,
• Steven H. Strauss and
• Olga V. Boltalina

Beilstein J. Org. Chem. 2025, 21, 515–525, doi:10.3762/bjoc.21.39

• provides yet another example of the structural flexibility of perfluorobenzylated compounds and their sensitivity towards chemical environment [18]. The molecules are arranged in two distinct columns, colored red and green that are skewed from one another by 31.2°. There is no significant π–π overlap

• at 416 nm is the most red-shifted from ANTH of the listed compounds, resulting in deeper blue fluorescence. It also has the largest Stokes shift of 837 cm−1 (large Stokes shifts are attributed to attenuation of fluorescence by self-quenching processes [30]). Only ANTH obeys the mirror image rule

• stacked columns of ANTH moieties are colored red and green, BnF groups are colored in yellow, and H atoms have been omitted for clarity. In the off-side view (bottom right), both, F and H atoms are omitted for a better overview. Absorption spectra of ANTH and 9,10-ANTH(BnF)2 in CH2Cl2 recorded over the

Synthesis of the aggregation pheromone of Tribolium castaneum

• Biyu An,
• Xueyang Wang,
• Ao Jiao,
• Qinghua Bian and
• Jiangchun Zhong

Beilstein J. Org. Chem. 2025, 21, 510–514, doi:10.3762/bjoc.21.38

• with Grignard reagent, and oxidation with RuCl3/NaIO4. Keywords: aggregation pheromone; chiral 2-methyloxirane; red flour beetle; total synthesis; Introduction The red flour beetle, Tribolium castaneum Herbst (Coleoptera: Tenebrionidae), is a cosmopolitan, destructive stored product pest [1], which

• harmful to human health and this became a significant challenge to food security [6]. Long-term synthetic pesticide applications to control the red flour beetle has resulted in the development of resistance to organophosphates, pyrethroids, methyl carbamates, and neonicotinoids [7][8]. It became critical

• tosylate and a chiral Grignard reagent. The synthetic pheromone could be valuable for the control of the red flour beetle. The aggregation pheromone of Tribolium castaneum. Retrosynthetic analysis of the aggregation pheromone (4R,8R)-1. Synthesis of chiral tosylate (S)-10. Synthesis of chiral tosylate (R

Synthesis of N-acetyl diazocine derivatives via cross-coupling reaction

• Thomas Brandt,
• Pascal Lentes,
• Jeremy Rudtke,
• Michael Hösgen,
• Christian Näther and
• Rainer Herges

Beilstein J. Org. Chem. 2025, 21, 490–499, doi:10.3762/bjoc.21.36

• diazocine attached to glutamate to form a photoswitchable neurotransmitter [10]. The halogen-substituted N-acetyl diazocines 2–4 were used as the starting compounds for further derivatization via Pd-catalyzed cross-coupling reactions. Solutions of the Z isomers are yellow. The E isomers are red. Synthesis

Beyond symmetric self-assembly and effective molarity: unlocking functional enzyme mimics with robust organic cages

• Keith G. Andrews

Beilstein J. Org. Chem. 2025, 21, 421–443, doi:10.3762/bjoc.21.30

• triad (red) was hoped to activate the benzyl alcohol nucleophile, but it does not activate (polarize) the electrophile (substrate ester group). (B) One of Rebek’s “clefts” [108][109]. The rigidly organized carboxylic acids both bind the substrate and the transition state for hydrolysis of an acetal. (A

Unraveling aromaticity: the dual worlds of pyrazole, pyrazoline, and 3D carborane

• Zahra Noori,
• Miquel Solà,
• Clara Viñas,
• Francesc Teixidor and
• Jordi Poater

Beilstein J. Org. Chem. 2025, 21, 412–420, doi:10.3762/bjoc.21.29

• -electron contributions) for a perpendicular magnetic field over a plane 1 a.u. above the molecular plane of the pyrazole ring of the o-carborane-fused pyrazoles. Red/blue arrows when the component parallel/antiparallel to B is greater than 30% of the vector modulus. Diatropic/paratropic circulations are

Antibiofilm and cytotoxic metabolites from the entomopathogenic fungus Samsoniella aurantia

• Rita Toshe,
• Syeda J. Khalid,
• Blondelle Matio Kemkuignou,
• Esteban Charria-Girón,
• Paul Eckhardt,
• Birthe Sandargo,
• Kunlapat Nuchthien,
• J. Jennifer Luangsa-ard,
• Till Opatz,
• Hedda Schrey,
• Sherif S. Ebada and
• Marc Stadler

Beilstein J. Org. Chem. 2025, 21, 327–339, doi:10.3762/bjoc.21.23

• experimental (black) and simulated Boltzmann-averaged (red: (2’S,3’S,12S)-1; green: (2’S,3’S,12R)-1) ECD spectra of compound 1. A plausible biosynthetic pathway of 1–3. Biofilm inhibition and eradication assessment via CV staining assay. A) S. aureus biofilm inhibition by farinosone D (1) and farinosone A (2

Red light excitation: illuminating photocatalysis in a new spectrum

• Lucas Fortier,
• Corentin Lefebvre and
• Norbert Hoffmann

Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22

• Picardie Jules Verne UR 7378, 10 rue Baudelocque, 80000 Amiens, France Institute of Physics and Chemistry of Materials of Strasbourg (IPCMS), University of Strasbourg UMR 7504, 23 rue du Loess, BP 43, 67034 Strasbourg CEDEX 2, France 10.3762/bjoc.21.22 Abstract Red-light-activated photocatalysis has

• become a powerful approach for achieving sustainable chemical transformations, combining high efficiency with energy-saving, mild conditions. By harnessing the deeper penetration and selectivity of red and near-infrared light, this method minimizes the side reactions typical of higher-energy sources

• , making it particularly suited for large-scale applications. Recent advances highlight the unique advantages of both metal-based and metal-free catalysts under red-light irradiation, broadening the range of possible reactions, from selective oxidations to complex polymerizations. In biological contexts

Molecular diversity of the reactions of MBH carbonates of isatins and various nucleophiles

• Zi-Ying Xiao,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2025, 21, 286–295, doi:10.3762/bjoc.21.21

• triphenylphosphine with MBH nitriles of isatins in acetonitrile at room temperature quickly gave red solid products 6a–d in high yields (Scheme 3). In this reaction, triphenylphosphine acted as a nucleophile to finish an allylic SN2 reaction. The obtained triphenylphosphaneylidenes are stable, which can be isolated

Oxidation of [3]naphthylenes to cations and dications converts local paratropicity into global diatropicity

• Abel Cárdenas,
• Zexin Jin,
• Yong Ni,
• Jishan Wu,
• Yan Xia,
• Francisco Javier Ramírez and
• Juan Casado

Beilstein J. Org. Chem. 2025, 21, 277–285, doi:10.3762/bjoc.21.20

• , Me: methyl). Cyclic voltammograms of 1 and 2. UV–vis–NIR electronic absorption spectra of 1 (top) and 2 (bottom) during the electrochemical oxidation in 0.1 M n-Bu4N·PF6 in CH2Cl2 at room temperature. The traces are black lines for neutral, blue lines for radical cation, and red lines for dication

• theoretical Raman band at 1730 cm−1. FT-Raman spectra in CH2Cl2 (approx. 10−2 to 10−3 M) of: top) 1 (black), 1•+ (blue), and 12+ (red). Bottom) 2 (black), 2•+ (blue), and 22+ (red). Oxidations are carried out by stepwise addition of NOBF4 in CH2Cl2. Force constants for the CC stretching vibrational

• coordinates of the neutral (black), radical cation (red) and dication (blue) of m-1 and m-2 compared with those obtained, under the same level or theory, for neutral naphthalene (NAP) and cyclobutadiene (CBD). NICS-XY scans, at the (U)B3LYP/6-311G(d,p) level, for neutral m-1 and m-2 (black) and for their

Synthesis and characterizations of highly luminescent 5-isopropoxybenzo[rst]pentaphene

• Islam S. Marae,
• Jingyun Tan,
• Rengo Yoshioka,
• Zakaria Ziadi,
• Eugene Khaskin,
• Serhii Vasylevskyi,
• Ryota Kabe,
• Xiushang Xu and
• Akimitsu Narita

Beilstein J. Org. Chem. 2025, 21, 270–276, doi:10.3762/bjoc.21.19

• -substituted derivatives [21][22]. In comparison to the absorption spectrum of BPP 2, this lowest-energy absorption band of BPP-OiPr 3 was red-shifted by ≈26 nm, which marked the inductive and resonance effects of the electron-donating isopropyloxy group with lone pairs of electrons, raising the HOMO level

Effect of substitution position of aryl groups on the thermal back reactivity of aza-diarylethene photoswitches and prediction by density functional theory

• Misato Suganuma,
• Daichi Kitagawa,
• Shota Hamatani and
• Seiya Kobatake

Beilstein J. Org. Chem. 2025, 21, 242–252, doi:10.3762/bjoc.21.16

• -withdrawing substituents on the N-aryl moieties enhanced the thermal stability of the Z-isomers while maintaining the advantageous photoswitching properties upon irradiation with red light [52]. The effect of substituents on the thermal cis–trans isomerization of azobenzenes has also been widely studied, and

Quantifying the ability of the CF₂H group as a hydrogen bond donor

• Matthew E. Paolella,
• Daniel S. Honeycutt,
• Bradley M. Lipka,
• Jacob M. Goldberg and
• Fang Wang

Beilstein J. Org. Chem. 2025, 21, 189–199, doi:10.3762/bjoc.21.11

• 298 K. The 1H NMR signals of the CF2H group are indicated in red. C) Determination of the dissociation constant (Kd) of the n-Bu3PO···2b HB complex by fitting the data to a single-site binding model. Hydrogen bond donation ability of various donors as quantified by the dissociation constant (Kd) of

Hydrogen-bonded macrocycle-mediated dimerization for orthogonal supramolecular polymerization

• Wentao Yu,
• Zhiyao Yang,
• Chengkan Yu,
• Xiaowei Li and
• Lihua Yuan

Beilstein J. Org. Chem. 2025, 21, 179–188, doi:10.3762/bjoc.21.10

• promising potential for designing stimuli-responsive and smart polymers in the future. ESIMS spectrum of an equimolar mixture of G1 and H1 in CHCl3/CH3CN (1:1, v/v), including calculated (blue) and experimental (red) isotopic distribution for [H12 + G12 − 2PF6−]2+. Calculated and found m/z = 2444.3373 and

• and G1. The brown dotted lines show the hydrogen bond distance between H2 and the positively charged region of G1 (d[C–H···O] = 2.2–3.5 Å). The red dotted lines show the hydrogen bond distance between H2 and the proton of the phenyl group of G1 (d[C–H···O] = 2.7–2.9 Å). c) Dimeric structure showing

Hot shape transformation: the role of PSar dehydration in stomatocyte morphogenesis

• Remi Peters,
• Levy A. Charleston,
• Karinan van Eck,
• Teun van Berlo and
• Daniela A. Wilson

Beilstein J. Org. Chem. 2025, 21, 47–54, doi:10.3762/bjoc.21.5

• , which results in more rigid domains. The anomalous shapes observed, with bending starting from seemingly random positions, support this hypothesis (Supporting Information File 1, Figure S36). These irregular shapes are reminiscent of some anomalous shapes observed in red blood cells [25]. It was also

Emerging trends in the optimization of organic synthesis through high-throughput tools and machine learning

• Pablo Quijano Velasco,
• Kedar Hippalgaonkar and
• Balamurugan Ramalingam

Beilstein J. Org. Chem. 2025, 21, 10–38, doi:10.3762/bjoc.21.3

Synthesis, structure and π-expansion of tris(4,5-dehydro-2,3:6,7-dibenzotropone)

• Yongming Xiong,
• Xue Lin Ma,
• Shilong Su and
• Qian Miao

Beilstein J. Org. Chem. 2025, 21, 1–7, doi:10.3762/bjoc.21.1

• clarification). Structure of (M,P,M)-3 in the crystal of 3·CH2Cl2 (carbon and oxygen atoms are shown as grey and red ellipsoid at the level of 50% probability, and hexyl groups and hydrogen atoms are removed for clarity). UV–vis absorption spectrum (black line) and emission spectrum (blue line, excited at 400

Efficient synthesis of fluorinated triphenylenes with enhanced arene–perfluoroarene interactions in columnar mesophases

• Yang Chen,
• Jiao He,
• Hang Lin,
• Hai-Feng Wang,
• Ping Hu,
• Bi-Qin Wang,
• Ke-Qing Zhao and
• Bertrand Donnio

Beilstein J. Org. Chem. 2024, 20, 3263–3273, doi:10.3762/bjoc.20.270

• red-shift of the emission peak. Keywords: arene–perfluoroarene interaction; decafluorobiphenyl; fluorinated triphenylene; fluoroarene nucleophilic substitution; organolithium; Introduction Non-covalent arene–fluoroarene intermolecular interactions [1][2] are drawing increasing attention due to their

• (λem = 402 nm for PH8) and 460–500 nm for G66, with absolute quantum yields of 30% and 32%, respectively. Further, their fluorescence spectra in solutions show some solvent polarity influence, with a substantial red shift as the solvent polarity is increased. In thin film, the single luminescence

• maximum is shifted to 450 nm (518 nm) and 610 nm for F6 (PH8) and G66, respectively. The thin film emission of G66 is red-shifted by about 120 nm compared with its solution, while the one of F6 is red-shifted only by 30 nm. This huge difference in thin film emission can be explained via their

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• inhibitors, and their effects were investigated using the Amplex-Red® kit in C. elegans. Individuals exposed to compounds 2a, 2b, 2c, 2d, 2e, and 2f at a concentration of 1 mM were analyzed for AChE activity in their extracts. The results revealed significant inhibition of AChE levels, with compound 2e

Advances in the use of metal-free tetrapyrrolic macrocycles as catalysts

• Mandeep K. Chahal

Beilstein J. Org. Chem. 2024, 20, 3085–3112, doi:10.3762/bjoc.20.257

• light irradiation. There are a few reports on red light-mediated transformations using other pyrrolic macrocycles, such as thiaporphyrin [94], phthalocyanine [95], and subphthalocyanine [96]. Porphyrin macrocycles can also absorb red light (Q bands at 518, 553, 592, and 648 nm with extinction

• coefficients around 104 M−1 cm−1), but they had not been used as photocatalysts in red light-induced processes until very recently. In 2022, Gryko and co-workers screened metal-free porphyrin macrocycles for various organic photochemical reactions that proceed via both oxidative and reductive quenching under

• red light irradiation [97]. Firstly, they evaluated the photoreductant role of metal-free macrocycles, H2TPP (18) and PPIX 78, in the red light-induced C–H arylation of different substrates such as furan, coumarin, thiol, pivalamide, aryl thiaether and the selenium equivalents. Use of both macrocycles

Extension of the π-system of monoaryl-substituted norbornadienes with acetylene bridges: influence on the photochemical conversion and storage of light energy

• Robin Schulte,
• Dustin Schade,
• Thomas Paululat,
• Till J. B. Zähringer,
• Christoph Kerzig and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 3061–3068, doi:10.3762/bjoc.20.254

• is necessary to accomplish a reasonable balance between the MOST parameters. Hence, to increase the energy density and to induce a decent red shift of the absorption, two, three or even more norbornadiene units may be combined in one integral molecule by attachment to a shared, linking arene unit

• UV range [30]. Therefore, we aimed at further modification of the core structure of bis-and tris-norbornadienes, which may lead to a more pronounced red shift of the absorption while maintaining the high energy density. As this has been shown in other cases already [34], we anticipated that the

• substitution patterns, the compounds 1h–l,n showed the characteristic long-wavelength bands with maxima between 310 nm (1k) and 345 nm (1n) and low-energy zero onsets from 345 nm (1k) to 420 nm (1n). Hence, the red shift of the absorption bands correlates with the size of the respective π-system of the