Asymmetric organocatalytic synthesis of chiral homoallylic amines

• Nikolay S. Kondratyev and
• Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

• for the resolution of chiral amines [28]. However, it was not until 2004 that they were recognised as efficient chiral Brønsted acid organocatalysts for asymmetric Mannich reactions [29]. Malkov and co-workers revealed [30] that (R)-TRIP can act as a very efficient catalyst for the kinetic resolution

• -substituted aldimines. This was later addressed by the same researchers [15], who developed an organocatalytic kinetic resolution of secondary boronates to furnish bench-stable homochiral (S)-35. The latter were then employed in the asymmetric allylation of in situ-formed primary aldimines 37, leading

• directly to the unprotected chiral (S,Z)-homoallylic amines 38 in high yields and with an excellent retention of the enantiopurity (Scheme 8B). The method remains the only direct Z-selective crotylation to attain enantioenriched unprotected homoallylic amines, and the only example of an effective kinetic

Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines

• Michał Błauciak,
• Dominika Andrzejczyk,
• Błażej Dziuk and
• Rafał Kowalczyk

Beilstein J. Org. Chem. 2024, 20, 2313–2322, doi:10.3762/bjoc.20.198

• ][5]. The transient impact of kinetic energy, channeled into the reaction, facilitates overcoming the constraints inherent in equilibrium models. Thus, employing limited substrates could potentially yield diverse products through a simple alteration of conditions, compared to solvent-based methods [6

• for unconventional reaction pathways by exploiting kinetic energy to surpass equilibrium constraints. This methodology presents several advantages over conventional solvent-based approaches, including the potential for diverse product formation with limited substrates and the development of

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

• , the interest to describe the influence of substrate or catalyst structures on the rate or selectivity of a reaction is well-established and led among others to the introduction of Hammett parameters to relate chemical structures to both kinetic and thermodynamic reaction properties [28] (Figure 4). As

• enantioselectivities of a kinetic resolution of benzyl alcohols and an enantiodivergent fluorination of allylic alcohols, observing good correlations for both reactions. Since then, the proposed NCI descriptors have been successfully applied to multiple different reactions, such as an allenoate Claisen rearrangement

• have also been used to predict the Mayr–Patz nucleophilicity parameter N, which estimates the nucleophilicity of a nucleophile based on experimentally measured kinetic data. The MLR models are used to predict N for more than 1200 nucleophiles, enabling the prediction of N for further nucleophiles [98

Deuterated reagents in multicomponent reactions to afford deuterium-labeled products

• Kevin Schofield,
• Shayna Maddern,
• Yueteng Zhang,
• Grace E. Mastin,
• Rachel Knight,
• Wei Wang,
• James Galligan and
• Christopher Hulme

Beilstein J. Org. Chem. 2024, 20, 2270–2279, doi:10.3762/bjoc.20.195

• significantly enhanced metabolic stability, a key parameter for property-based design efforts. Keywords: deuterated aldehydes; deuterated formamides; deuterated isocyanides; DHPs; kinetic isotope effect; Leuckart–Wallach; microsomal stability; multicomponent reactions; Introduction Multicomponent reactions

• drug-like compounds with synthetic ease [5][6]. In recent years use of deuterium in drug discovery has expanded beyond mechanistic and tracer studies to deuterium incorporation in small molecules in attempts to hijack the deuterium kinetic isotope effect to induce longer drug t1/2 and greater systemic

• this position was thought a reasonable approach to extend drug t1/2 through exploitation of the kinetic isotope effect underpinned by the C–D bond being slightly shorter and stronger than a C–H bond. Such site-specific labeling was hypothesized to slow CYP3A4 metabolism. To evaluate the hypothesis

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• , batch-to-batch reproducibility, and reliable kinetic modelling of the system [10][11]. Furthermore, the transferability of CFPS screening results to the cells is limited but important, as in vivo production is often required for preparative scale applications [11][12]. To date, the description of CFPS

Metal-free double azide addition to strained alkynes of an octadehydrodibenzo[12]annulene derivative with electron-withdrawing substituents

• Naoki Takeda,
• Shuichi Akasaka,
• Susumu Kawauchi and
• Tsuyoshi Michinobu

Beilstein J. Org. Chem. 2024, 20, 2234–2241, doi:10.3762/bjoc.20.191

• . Synthesis of DBA 5. Mechanical properties of PVA-N3 before and after crosslinking. Supporting Information Supporting Information File 70: Experimental section and kinetic study of the reaction of compound 5 and benzyl azide. Funding This work was partially supported by NEDO (grant number 23200050-0), the

Factors influencing the performance of organocatalysts immobilised on solid supports: A review

• Zsuzsanna Fehér,
• Dóra Richter,
• Gyula Dargó and
• József Kupai

Beilstein J. Org. Chem. 2024, 20, 2129–2142, doi:10.3762/bjoc.20.183

• difficult to synthesise but remains stable, forming the support around it is advisable [67]. Another limitation of the encapsulation method is that the size of the pore openings in the support must be smaller than the kinetic size of the immobilised catalyst [77]. Covalent tethering is a method of bonding

Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• character of TsO− and triphenylphosphine oxide, precluding any thermodynamic versus kinetic arguments for regioselectivity. Conclusion We have established highly regioselective N1- and N2-alkylations of methyl 5-bromo-1H-indazole-3-carboxylate from diverse commercially available alcohols with excellent

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• representative radical cation precursors that are widely used to realize the formation of unique bonds. The respective radical cations are trapped by various nucleophiles under radical and/or ion control, where kinetic and/or thermodynamic effects are expected to be dominant. Typical examples that clearly show

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• diaryliodonium triflates such as 8 and 9 [13]. They studied a model reaction with 2-aminopyridine (1), p-tolualdehyde (10) and cyclohexyl isocyanide (11) both experimentally (by binding and kinetic studies) and theoretically (by density functional theory (DFT) calculations) (Scheme 5). Catalyst 8 was found to be

• no loss of activity after 30 days. On the other hand, reusability seemed problematic, as significant decrement in yield was observed after the second cycle. Kinetic target-guided synthesis (KTGS) has emerged as a promising strategy in drug discovery [24]. It relies on a drug target serving as a

A fiber-optic spectroscopic setup for isomerization quantum yield determination

• Anouk Volker,
• Jorn D. Steen and
• Stefano Crespi

Beilstein J. Org. Chem. 2024, 20, 1684–1692, doi:10.3762/bjoc.20.150

• kinetic model describing the components and the non-negativity constraint on the absorbance, can help to guide the decomposition of the data into chemically meaningful concentration traces and species-associated spectra (SAS) [38]. Global and target analysis is one of the methods employed in recent

pKalculator: A pK_a predictor for C–H bonds

• Rasmus M. Borup,
• Nicolai Ree and
• Jan H. Jensen

Beilstein J. Org. Chem. 2024, 20, 1614–1622, doi:10.3762/bjoc.20.144

• that the most substituted C–H site next to a ketone will form the more stable carbanion (thermodynamic anion), whereas the least substituted carbanion will be the least stable carbanion (kinetic anion). This can generally be controlled by the type of base used. For the reaction in Scheme 1a, n-BuLi is

• commly used, which is known to lead to the kinetic anion. Because our ML model relies on the principle of lowest energy, it predicts the site with the lowest pKa value as the site of reaction (thermodynamic carbanion) and does not account for the type of base used. Going to Scheme 1b, we look at a

Hypervalent iodine-catalyzed amide and alkene coupling enabled by lithium salt activation

• Akanksha Chhikara,
• Fan Wu,
• Navdeep Kaur,
• Prabagar Baskaran,
• Alex M. Nguyen,
• Zhichang Yin,
• Anthony H. Pham and
• Wei Li

Beilstein J. Org. Chem. 2024, 20, 1405–1411, doi:10.3762/bjoc.20.122

• less coordinating counterion is more reactive to activate the olefin. We also conducted kinetic studies on how the olefin and amide structures impacted the overall reaction rate. The more electron-rich olefins generally proceeded faster than the electron-poor ones, suggesting that a significant

• positive charge was likely built up on the olefin prior to the nucleophilic addition. On the other hand, the electronic nature of the para-substituted benzamides had little impact on the overall reaction rate as both electron-rich and electron-deficient benzamides proceeded with similar kinetic profiles

• . All the kinetic plots are shown in Figure 1. With the optimized conditions and kinetic information in hand, we turned our attention to the amide substrate scope. In this case, both electron-rich and -deficient benzamides proceeded to the desired products in reasonable yields and high

Mechanistic investigations of polyaza[7]helicene in photoredox and energy transfer catalysis

• Johannes Rocker,
• Till J. B. Zähringer,
• Matthias Schmitz,
• Till Opatz and
• Christoph Kerzig

Beilstein J. Org. Chem. 2024, 20, 1236–1245, doi:10.3762/bjoc.20.106

• under otherwise identical conditions gave a completely different spectrum (Figure 1B, red) and we assume that the triplet state of Aza-H is almost fully quenched by oxygen at the selected delay, which is supported by additional kinetic measurements (see below). The second transient species is identified

• transient species in Ar-saturated/air-saturated solution is also reflected in the kinetic traces at 440 nm and 640 nm (Figure 1B, inset). Following the decay of the transient triplet species (³Aza-H), essentially the same signal is reached irrespective of the presence of oxygen or argon in the solution. The

• competes with ionization already during the laser pulse. Kinetic measurements of the radical cation species show multiexponential decay, probably due to recombination of the radical cation and radical anion (Figure 2A, inset). Despite the reported absorption maximum for 4CP•− at 398 nm [72], we were unable

Kinetically stabilized 1,3-diarylisobenzofurans and the possibility of preparing large, persistent isoacenofurans with unusually small HOMO–LUMO gaps

• Qian Liu and
• Glen P. Miller

Beilstein J. Org. Chem. 2024, 20, 1099–1110, doi:10.3762/bjoc.20.97

• phenyl substituents, have been synthesized and shown to adopt non-planar conformations with the ortho-alkyl groups located above and below the most reactive 1,3-carbons of the furan ring. These bulky substituents provide a strong measure of kinetic stabilization. Thus, 1,3-dimesitylisobenzofuran and 1,3

• photooxidative resistance, especially along the acene-like segment, plus a strong measure of kinetic stabilization at the 1,3-carbons of the furan ring. As described here, there are compelling reasons to contemplate the synthesis of large, persistent isoacenofurans with unusually small HOMO–LUMO gaps. In this

• isoacenofurans. Thus, unless there is a need for improved kinetic stabilization of the most reactive 1,3-carbons on the furan ring, there appears little benefit of utilizing highly hindered 2’,4’,6’-triisopropyl (compound 24) or 2’,4’,6’-tri-tert-butyl (compound 25) substituents, especially as these compounds

Synthesis of 1,4-azaphosphinine nucleosides and evaluation as inhibitors of human cytidine deaminase and APOBEC3A

• Maksim V. Kvach,
• Stefan Harjes,
• Harikrishnan M. Kurup,
• Geoffrey B. Jameson,
• Elena Harjes and
• Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2024, 20, 1088–1098, doi:10.3762/bjoc.20.96

• . Evaluation of 1,4-azaphosphinine derivatives as inhibitors of hCDA, engineered A3B and wild-type A3A Evaluation of hCDA inhibition We monitored the hCDA-catalysed deamination of dC at 286 nm [70] and analysed the kinetic profiles at various inhibitor concentrations using a global regression analysis of the

• kinetic data using Lambert’s W function [71]. This method provides better estimates for the Michaelis–Menten constant (KM) and maximum velocity (Vmax) than nonlinear regression analysis of the initial rate (V0). It is also superior to any of the known linearised transformations of the Michaelis–Menten

• provides the initial velocity of deamination of ssDNA substrates, including the modified ones [56], in the presence of A3 enzymes. Consequently, the Michaelis–Menten kinetic model can be used to characterise substrates and inhibitors of A3. Both anomers of the nucleoside Va were individually incorporated

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• ) and 3-oxa-1,4-BCHs (123) (Figure 19) [58]. The experimental distribution coefficient (logD) of 2- and 3-oxa-1,4-BCHs 122 and 123 is reduced compared to equivalent para-benzene 121 while the kinetic aqueous solubility (KS) is increased. The intrinsic clearance rate in mouse liver microsomes (CLint) is

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• and kinetic experiments or crystallization of the active homodimer will be required to resolve the catalytic mechanism. If NnlA is specific for NNG as suggested by these results, it is worth speculating about potential functions of NNG and other nitramine natural products. Bacterial natural products

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• a side note, it should be mentioned that Hutchings and colleagues reported the hydrochlorination of ethylene with Lewis acids on solid supports [52]. However, this work solely focuses on kinetic studies and is therefore not discussed in this report. Reactions with in situ-generated HCl HCl gas can

A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• for inositol dehydrogenases. (b) Comparison of the hygromycin A (red) and hygromycin A-like (orange) biosynthetic gene clusters. A more detailed comparison can be found in Supporting Information File 1, Table S2. Kinetic parameters for Hyg17. Supporting Information Supporting Information File 36

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• effect remains if the local structure of the linker consisting of an alkyl group and a pyrene group is maintained. Therefore, it is likely that the kinetic behavior of a protein immobilized with a single PASE linker exhibits an activation barrier-type energy surface between the bi-stable conformations on

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• Ruichen Lan Brock Yager Yoonsun Jee Cynthia S. Day Amanda C. Jones Chemistry, Wake Forest University, 1834 Gulley Rd., Winston-Salem, NC, 27109, USA 10.3762/bjoc.20.43 Abstract Kinetic studies on the intramolecular hydroamination of protected variants of 2,2-diphenylpent-4-en-1-amine were carried

• undertaking a 1H NMR spectroscopic kinetic survey of solvent, ligand, and substituent effects on the general reaction 1 → 3 (with a variety of N-protecting groups), to supplement known qualitative observations. We found that, (1) electron-withdrawing phosphines accelerate hydroamination, (2) reactions are

• faster with more Lewis basic urea substrates, (3) mixed solvents are uniquely able to enhance rates, with protic methanol and DCM identified as the best combination, and (4) kinetic isotope effects are variable depending on the concentration of protons in solution with small deuterium KIE’s at low

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• corresponding 2,2-difluoroketones [15]. In related kinetic studies concerning the electrophilic 2-fluorination of 1,3-diketones with Selectfluor [16][17], we demonstrated that the rate-determining step for difluorination was enolization of the intermediate 2-fluoro-1,3-diketone. Monofluorination of 1,3

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• ). This is also the basic compound used in the transformations that are studied in this work due to the high kinetic stability and good solubility ensured by the tert-butyl groups. The largest positive charge of the C(1)–C(2)–C(3) segment is concentrated at the C(2) atom. The charge at the other