Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines

• Michał Błauciak,
• Dominika Andrzejczyk,
• Błażej Dziuk and
• Rafał Kowalczyk

Beilstein J. Org. Chem. 2024, 20, 2313–2322, doi:10.3762/bjoc.20.198

• ][5]. The transient impact of kinetic energy, channeled into the reaction, facilitates overcoming the constraints inherent in equilibrium models. Thus, employing limited substrates could potentially yield diverse products through a simple alteration of conditions, compared to solvent-based methods [6

• conditions are provided by mechanochemistry methods in ball mills. The reaction performed in a mixer mill over 1 hour only led to 13% of sulfa-Michael adduct (see Supporting Information File 1) beside the expected enantioenriched product (69%, 78% ee). We assumed the energy impact generated in the mixer mill

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

• energies of relevant species either via force field or quantum chemical methods to assess the properties of a reaction such as activation energies or selectivity. Irrespective of the degree of automation, in silico calculations are often less time-sensitive than wet-lab experiments and can be used to

• reduce the number of required experiments. As such, these methods contribute to the acceleration of catalyst discovery, for example through high-throughput virtual screening. Predating these computational techniques is the desire to understand and explain experimental outcomes in organic chemistry with

• threshold 60%). Thus, the authors recommend that for developing a new reaction, their metric can be used to decide which catalyst should be tested first based on the expected success. This generality-based guiding principle of experimental design showcases a further possibility for data-driven methods to

gem-Difluorination of carbon–carbon triple bonds using Brønsted acid/Bu₄NBF₄ or electrogenerated acid

• Mizuki Yamaguchi,
• Hiroki Shimao,
• Kengo Hamasaki,
• Keiji Nishiwaki,
• Shigenori Kashimura and
• Kouichi Matsumoto

Beilstein J. Org. Chem. 2024, 20, 2261–2269, doi:10.3762/bjoc.20.194

• Organofluorine compounds have attracted great attention in various fields, such as organic materials and pharmaceuticals [1][2][3], because fluorinated compounds sometimes show specific properties [4]. So far, several methods have been developed for the synthesis of fluorinated compounds. Using nucleophilic

• fluorobenziodoxole, are also utilized as F+ equivalents to introduce fluorine atoms into organic molecules. In addition, various trifluoromethylation reagents have been developed so far [5][6][7][8][9][10][11][12][13][14][15][16][17][18]. Transition-metal-catalyzed fluorination and trifluoromethylation methods have

• blocks for further transformations. We have focused on the investigation of gem-difluorination of carbon–carbon triple bonds, because this procedure is one of the most simple but powerful and straightforward methods. In addition, there have been a few reports in the literature that seem to mainly rely on

Selective hydrolysis of α-oxo ketene N,S-acetals in water: switchable aqueous synthesis of β-keto thioesters and β-keto amides

• Haifeng Yu,
• Wanting Zhang,
• Xuejing Cui,
• Zida Liu,
• Xifu Zhang and
• Xiaobo Zhao

Beilstein J. Org. Chem. 2024, 20, 2225–2233, doi:10.3762/bjoc.20.190

• focused on their synthesis in the past decades [23][24][25][26][27][28][29][30]. These methods for the synthesis of β-keto thioesters include the mercaptolysis of diketene (Scheme 1a, path 1) [23], 2,2,6-trimethyl-4H-1,3-dioxin-4-one (Scheme 1a, path 2) [24], acylated Meldrum’s acids (Scheme 1a, path 3

Electrochemical allylations in a deep eutectic solvent

• Sophia Taylor and
• Scott T. Handy

Beilstein J. Org. Chem. 2024, 20, 2217–2224, doi:10.3762/bjoc.20.189

• 3 mL of methoxycyclopentane was pipetted directly onto the reaction solution. Then, the vial was capped with a rubber stopper. The methoxycyclopentane acted similarly to the diethyl ether in previous separatory methods by extracting the product from the DES. After letting the methyoxycyclopentane

Heterocycle-guided synthesis of m-hetarylanilines via three-component benzannulation

• Andrey R. Galeev,
• Maksim V. Dmitriev,
• Alexander S. Novikov and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2024, 20, 2208–2216, doi:10.3762/bjoc.20.188

• key fragment [17][18][19][20][21][22][23][24][25][26]. The aforementioned features have led to an extensive development of novel methods to access meta-substituted anilines which can be divided into two main strategies (Scheme 1A) [27]. The first strategy focuses on the decoration of the aromatic ring

• ) substituent in the meta-position [38][39][40][41][42][43]. For example, several methods based on the Michael condensation–oxidation sequence starting from α,β-unsaturated ketones have been described (Scheme 1B) [44][45][46][47][48][49][50]. Recently, several methods have been developed based on the

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

• substituted derivatives Alternariol: Alternariol (AOH, 1, Figure 4) was first isolated in the early 1950ies from Alternaria tenuis (synonymous with A. alternata). Its structure was elucidated with chemical analysis methods [33][54] and later unambiguously confirmed by X-ray crystallographic analyses [55][56

• ][68] and syntheses of labeled alternariol [69][70]. Selected syntheses will be given in the chapter on total syntheses (vide infra). The ubiquity and easy availability of this toxin by microbiological and synthetic methods (5 g of the compound were once synthesized in the group of the author) allowed

• than 500 entries to this compound. It was first isolated together with alternariol from Alternaria tenuis (synonymous to A. alternata) [33][54]. Its correct structure was proposed, based on chemical methods, shortly after [42] and was later unambiguously confirmed by total synthesis [62] and finally by

Finding the most potent compounds using active learning on molecular pairs

• Zachary Fralish and
• Daniel Reker

Beilstein J. Org. Chem. 2024, 20, 2152–2162, doi:10.3762/bjoc.20.185

• . Methods Datasets Datasets were obtained from Landrum et al. [23] which utilized their simulated medicinal chemistry project data (SIMPD) algorithm to curate and split 99 ChEMBL [24] Ki datasets with consistent values for target id, assay organism, assay category, and BioAssay Ontology (BAO) format into

• , Table S3). Random Forest and AD-XGB exhibited no statistically significant difference from each other (p = 0.2, Supporting Information File 1, Table S3). The increased diversity in selection from the deep models, that was heightened for our paired approach, highlights how methods that allow for

• optimization. Discussion Coinciding with increased enthusiasm for machine learning methods to support drug discovery [30][31], expanded use of adaptable laboratory automation [16][32][33] will help support adaptive learning methods like active machine learning to become a cornerstone technology to guide

O,S,Se-containing Biginelli products based on cyclic β-ketosulfone and their postfunctionalization

• Kateryna V. Dil and
• Vitalii A. Palchykov

Beilstein J. Org. Chem. 2024, 20, 2143–2151, doi:10.3762/bjoc.20.184

• never been used as enolizable carbonyl component in this chemistry. To the best of our knowledge only one compound from the target group was published (2003) [13] before this work, however, without any spectral evidence (Figure 1). Considering our constant interest in the development of methods for the

• ][4][9] or even visible light-driven methods [25][26][27][28]. We started our study from the optimization of the reaction conditions using β-ketosulfone 1, benzaldehyde and thiourea as model reaction. According to the literature, the reaction has been shown to work best and most efficiently under

• ]. We hope that compound 2r and its analogues obtained in this work can be further deeply studied by in silico and in vitro methods to discover the compound most suitable for clinical trials. The structures of the synthesized compounds 2a–r were confirmed by spectral data. The 1H NMR spectra of the

Factors influencing the performance of organocatalysts immobilised on solid supports: A review

• Zsuzsanna Fehér,
• Dóra Richter,
• Gyula Dargó and
• József Kupai

Beilstein J. Org. Chem. 2024, 20, 2129–2142, doi:10.3762/bjoc.20.183

• , providing a cost-effective alternative to traditional catalytic methods. The immobilisation of organocatalysts offers the potential to increase catalyst reusability and efficiency in organic reactions. This article reviews the key parameters that influence the effectiveness of immobilised organocatalysts

• methods, such as the application of immobilised organocatalysts [14][15] and heterogeneous organocatalysis [16][17][18], could be a potential driver for the introduction of, for example, enantioselective organocatalysis in the pharmaceutical industry [19]. Knowledge of the factors that influence catalyst

• ]. The role of the polymers as supports for catalysts is not merely passive. These supports significantly influence the reaction environment and catalytic efficiency [42]. Attachment methods, spacer lengths, and polymer nature profoundly impact the catalyst's performance and recyclability. Various

Efficacy of radical reactions of isocyanides with heteroatom radicals in organic synthesis

• Akiya Ogawa and
• Yuki Yamamoto

Beilstein J. Org. Chem. 2024, 20, 2114–2128, doi:10.3762/bjoc.20.182

• understand the conditions for the generation of heteroatom radicals. In addition, from the perspective of recent green chemistry, the development of environmentally friendly synthetic methods is strongly demanded. In other words, a new synthetic method should have excellent atom economy, produce no waste, be

• aware of resource recycling, and promote the use of natural energy [16]. The following three methods are generally used to generate heteroatom radicals (E•) (Scheme 1). In method 1, E• is generated by hydrogen abstraction from E–H by cyanoisopropyl radicals generated by thermal decomposition of 2,2

• on molecular transformations by the reactions of heteroatom radicals with isocyanides using methods 1 and 2. Thus, in this perspective, we mainly focused on the use of method 1 and method 2 for the generation of heteroatom radicals and the reactivity of them with isocyanides. Among these three

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• simulations and analyse the corresponding results. The presented computational toolbox represents a valuable resource for researchers studying protein–glycan interactions and incorporates advanced computational methods for building, visualising and predicting protein/glycan structures, modelling protein

• , especially in bacterial glycans, makes the structural and conformational analysis of glycans extremely difficult, posing a considerable challenge when employing conventional structural biology methods for glycan analysis [10][12]. Nevertheless, understanding the three-dimensional structure of glycans is

• focused in the last decades on the development of new techniques and technologies for the systematic analysis of complex glycans and the study of their interactions with proteins. A multidisciplinary approach, spanning from wet laboratory experiments and biophysical techniques to bioinformatics methods is

Cage-like microstructures via sequential Ugi reactions in aqueous emulsions

• Rita S. Alqubelat,
• Yaroslava A. Menzorova and
• Maxim A. Mironov

Beilstein J. Org. Chem. 2024, 20, 2078–2083, doi:10.3762/bjoc.20.179

• Colloidosomes are microcapsules built on the basis of colloidal particles [1]. In the past 20 years, many methods have been proposed for the synthesis based on different particle types (inorganic, polymer, and composite) [2][3][4] and shape [5] (spheres, discs, and fibers). A distinctive feature of

• obtain colloidosomes covered with fissures of a controlled size [10]. A simpler method recently proposed involves the self-assembly of starch granules on the surface of emulsion droplets. However, this approach did not allow the pore size to be controlled [14]. Thus, the currently available methods for

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• numerous other applications. The search for new and efficient syntheses of these heterocycles is therefore highly relevant. The modular concept of multicomponent reactions (MCR) has paved a broad alley to heteroaromatics. The advantages over traditional methods are the broader scope and increased

• intermediates undergo cyclization following a Michael addition to yield the corresponding pyrano[2,3-c]pyrazoles 63 (Scheme 20) [91]. Safaei-Ghomi et al. succeeded in isolating the intermediately formed pyrazole 64 [92]. Since pyrano[2,3-c]pyrazoles are fused heterocycles of interest, catalytic methods for

• ) cycloadditions with alkenes or alkynes to form pyrazoles, also in the sense of MCR. Furthermore, while not strictly classified as pericyclic reactions, hydrazones are also recognized as CN2 building blocks in pyrazole synthesis [169]. 1,3-Dipoles as key intermediates Various methods have been developed for the

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• appealing opportunities to take advantage of the versatility of this reagent. Such an approach can either ameliorate the previous methods in a more sustainable and efficient fashion or provide a mean for the discovery of new reactivity. Herein, this review aims to give an overview of the state of the art in

• FDA-approved drugs in the United States contain at least one azacycle [33]. Therefore, the development of gentle and efficient methods for accessing these heterocycles is an ongoing pursuit for synthetic chemists. As mentioned above, with their two nitrogen atoms, hydrazones constitute unique synthons

• electrochemical approach constitutes an advantageous alternative to previous methods, which required the preparation of difficult-to-handle hydrazonoyl halides for the synthesis of 1-aryl-5-amino-1,2,4-triazoles from cyanamide [56][57]. Pyrazolines are highly important heterocyclic motifs in pharmaceutical and

1,2-Difluoroethylene (HFO-1132): synthesis and chemistry

• Liubov V. Sokolenko,
• Taras M. Sokolenko and
• Yurii L. Yagupolskii

Beilstein J. Org. Chem. 2024, 20, 1955–1966, doi:10.3762/bjoc.20.171

• claimed to be a potential monomer for the preparation of new fluoropolymers [43][44]. Despite the fact that HFO-1132 has been known for a long time, there are no publications that summarize the chemistry of the compound. With this in mind, the main methods for the preparation of (E/Z)-1,2-difluoroethylene

• synthesis of 1,2-difluoroethylene based on perfluoropropyl vinyl ether as starting material can be found (Scheme 7). Consequently, two methods to prepare 1,2-difluoroethylene in the laboratory have been described to date. Even though at least five approaches to HFO-1132 can be found in patent literature, it

• the methods for the preparation of HFO-1132 as well as reactions demonstrating the chemical behavior of this compound. From the reactions not included in this Review article, mechanistic studies on 1,2-difluoroethylene ozonolysis [77][103][104][105][106][107][108] and studies on the stability of

Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• , Parr and Yang developed a now widely used index of nucleophilicity from robust electron population methods such as NBO analyses, referred to as the Fukui index (f-) [44]. The larger the Fukui index, the greater the nucleophilicity, and is thus inversely proportional to the partial charge. Our

• yields from the same carbon sources through reagent control. Experimental General methods All materials were obtained from commercial suppliers and used without further purification unless otherwise noted. Anhydrous solvents were obtained from Sigma-Aldrich and used directly. Reactions involving air- or

• : Characterization of all compounds (1H NMR, 13C NMR, LC–MS, IR), and crystallographic methods and data for products P1 and P2. Supporting Information File 23: DFT methods, relative energy comparisons, TS imaginary frequencies, and XYZ coordinates. Supporting Information File 24: GoodVibes outputs. Acknowledgements

Negishi-coupling-enabled synthesis of α-heteroaryl-α-amino acid building blocks for DNA-encoded chemical library applications

• Matteo Gasparetto,
• Balázs Fődi and
• Gellért Sipos

Beilstein J. Org. Chem. 2024, 20, 1922–1932, doi:10.3762/bjoc.20.168

• ]. The success of this technology ultimately relies on the quality and diversity of the libraries. DEL synthesis must employ DNA-compatible reactions; hence it operates under a limited set of conditions [4][5]. DELs are typically produced via split-and-pool combinatorial chemistry methods. Using

• range of less widely applicable strategies have been developed as well [17][18][19][20][21][22]. The above-mentioned methods focus on the synthesis of α-alkyl-amino acids. Moving to α-aryl-amino acids, the Clayden group published an excellent asymmetric α-arylation method to access quaternary amino

• with the Negishi cross-coupling step in a continuous flow manner [41][42][43]. Continuous flow chemistry offers superior control over reaction parameters compared to traditional batch methods. This approach leads to reproducible reactions, improved safety features, and it can facilitate high-throughput

Solvent-dependent chemoselective synthesis of different isoquinolinones mediated by the hypervalent iodine(III) reagent PISA

• Ze-Nan Hu,
• Yan-Hui Wang,
• Jia-Bing Wu,
• Ze Chen,
• Dou Hong and
• Chi Zhang

Beilstein J. Org. Chem. 2024, 20, 1914–1921, doi:10.3762/bjoc.20.167

• Medicus (Figure 1) [9]. Therefore, in recent years, isoquinolinone derivatives have attracted considerable attention, and successful synthetic methods involving the isoquinolinone framework have been reported. A number of appealing methods for the synthesis of isoquinolinone scaffolds using transition

Novel oxidative routes to N-arylpyridoindazolium salts

• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2024, 20, 1906–1913, doi:10.3762/bjoc.20.166

• -arylpyridoindazolium salts S1–S3 was confirmed with HRMS and 1H, 13C and 19F NMR data; the complete assignment of the signals was performed using 2D NMR methods. The N–N bond formation was additionally confirmed via comparison of the 1H spectra for the salts and their diarylamine precursors. The absence of the signals

• A1, similarly to the chemical oxidation. The radical cation of dihydrophenazine formed was isolated and studied using ESR and HRMS methods. The ESR spectrum (see Supporting Information File 1) was typical for this type of compounds: a characteristic quintet due to hyperfine splitting on two

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• photochemical reactions under acidic conditions, which were proposed to proceed via radical cations [20]. Since electrochemical and photochemical aza-Wacker cyclizations can offer ring systems that are difficult to construct through state-of-the-art palladium-catalyzed methods, the mechanistic understanding of

Access to 2-oxoazetidine-3-carboxylic acid derivatives via thermal microwave-assisted Wolff rearrangement of 3-diazotetramic acids in the presence of nucleophiles

• Ivan Lyutin,
• Vasilisa Krivovicheva,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 1894–1899, doi:10.3762/bjoc.20.164

• versatile methods for the preparation of structurally diverse β-lactam derivatives is of great importance and relevance. Continuing the investigation of the reactivity and synthetic potential of diazotetramic acids (1), we have recently shown that these diazo reagents can act as precursors of β-lactam

• (SLC6A19) [10]. Hence, developing new synthetic methods to create structurally diverse 2-oxoazetidine-3-carboxylic acid derivatives is a highly valuable endeavour that could have a positive impact on future drug discovery. Most synthetic approaches to amides and esters of 2-oxoazetidine-3-carboxylic acids

• reported in the literature are based on the construction of the β-lactam ring (Scheme 1). The main methods include the [2 + 2] cycloaddition of acyl ketenes, generated by various methods, with imines [11][12][13][14] and the Wolff rearrangement of γ-amino-α-diazo-β-ketoesters followed by intramolecular

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• achieved during the last five years, and classifies them into five categories: synthetic methods, building blocks, scaffolds, biological activities and physical properties. Keywords: Groebke–Blackburn–Bienaymé reaction; multicomponent reactions; heterocycles; imidazo[1,2-a]pyridines; isocyanides

• future perspectives of this reaction. Review 1 Novel synthetic methods The previously mentioned review, published in 2019 [1], had already highlighted how wide the variety of methods were used to conduct the GBB reaction: as much as 46 different catalytic systems had been reported in the literature at

• (41–67%). Multicomponent polymerizations are simple and efficient methods to construct a library of polymers with great structural complexity and diversity, including fused-heterocyclic polymers[64]. Tang et al. [65] reported the transition-metal-free multicomponent polymerization of dialdehydes 96a–c

A facile three-component route to powerful 5-aryldeazaalloxazine photocatalysts

• Ivana Weisheitelová,
• Radek Cibulka,
• Marek Sikorski and
• Tetiana Pavlovska

Beilstein J. Org. Chem. 2024, 20, 1831–1838, doi:10.3762/bjoc.20.161

• significant topic. Surprisingly, there has been limited information on 5-deazaalloxazines (dAll) synthesis [20][21][22]. Most known methods employ the cyclization of 6-(arylamino)uracils with one-carbon reagents such as triethyl orthoformate, dimethylformamide dimethylacetal, carbon disulfide, N,N

• -dimethyldichloromethyleniminium chloride and the Vilsmeier reagent, or condensations between o-aminobenzaldehydes and barbituric acid [20][21][23][24][25][26][27]. Neither of these methods allows for the introduction of an aryl substituent into C(5), which confers unique chemical and physical properties on 5-aryldeazaalloxazines

• -type syntheses, MCRs have become helpful tools for more efficient preparation of chemical libraries with higher molecular diversity and complexity in fewer steps and less time [28][29]. Considering the limitations of existing methods, as well as the applications of 5-aryldeazaalloxazines 2, and in the

Hetero-polycyclic aromatic systems: A data-driven investigation of structure–property relationships

• Sabyasachi Chakraborty,
• Eduardo Mayo Yanes and
• Renana Gershoni-Poranne

Beilstein J. Org. Chem. 2024, 20, 1817–1830, doi:10.3762/bjoc.20.160

• PAS chemical space is with data-driven methods, which have proven in the last few years to be extremely successful at uncovering underlying structure–property relationships. To enable such exploration, we initiated the COMPAS Project (COMputational database of PASs), the first database dedicated to

• PASs and their molecular properties. The first installment, COMPAS-1 [6], contains ~35k cata-condensed polybenzenoid hydrocarbons (cc-PBHs) and has already enabled various directions of investigation, including by training of both interpretable machine [7] and deep learning methods [8], which led to