Interactions between cyclodextrins and cellular components: Towards greener medical applications?

• Loïc Leclercq

Beilstein J. Org. Chem. 2016, 12, 2644–2662, doi:10.3762/bjoc.12.261

• complexes with various biomolecules including lipids, carbohydrates, proteins and nucleic acids. In this section, some biomolecule/CD inclusion complexes are presented. i) Complexation of lipids and consequences Lipids are hydrophobic or amphiphilic molecules very diverse, including, among other fats, waxes

• with lipids (49%) and carbohydrates (8%) and as the fraction of cholesterol is 25% of total membrane lipids [54], the proposed explanation is based on the specific interaction of natural CDs with the erythrocyte membrane components. Indeed, α- and β-CD are excellently suited to solubilize phospholipids

• with CDs compared to lipids. iii) Complexation of carbohydrates The International Union of Pure and Applied Chemistry (IUPAC) defines carbohydrates as a class of organic compounds containing a carbonyl group (aldehyde or ketone) and at least two hydroxy residues (OH). It is noteworthy that substances

Synthesis of polyhydroxylated decalins via two consecutive one-pot reactions: 1,4-addition/aldol reaction followed by RCM/syn-dihydroxylation

• Michał Malik and
• Sławomir Jarosz

Beilstein J. Org. Chem. 2016, 12, 2602–2608, doi:10.3762/bjoc.12.255

• -dihydroxylation. The stereochemical outcome of these reactions is discussed. Keywords: carbasugars; one-pot reactions; ring-closing metathesis; syn-dihydroxylation; Introduction Derivatives of carbohydrates, in which the endocyclic oxygen atom is replaced with a methylene group are known as carbasugars [1]. Due

• to their similarity to carbohydrates, these compounds often possess interesting biological properties, e.g., they may act as glycosidase inhibitors [2][3][4]. One of such compounds, acarbose [5][6][7], found an application as a drug and is marketed worldwide. Five- and six-membered cyclitols are a

• initiated from known iododerivatives 13 and 14, prepared from suitably protected carbohydrates (Scheme 3) [45][46][47]. Each of these compounds was subjected to the zinc-mediated fragmentation, followed by the Jones oxidation. The resulting acid (not purified) was transformed into a Weinreb amide. As a

A self-assembled cyclodextrin nanocarrier for photoreactive squaraine

• Ulrike Kauscher and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2016, 12, 2535–2542, doi:10.3762/bjoc.12.248

• complexation. In that way, it was possible to decorate CDVs with carbohydrates [32][33], with peptides [34], and also with DNA [35]. Moreover CDVs were also shown to form very dense membranes in combination with phospholipids and cholesterol [36]. Previous studies also showed promising results for PDT

Efficient mechanochemical synthesis of regioselective persubstituted cyclodextrins

• Laszlo Jicsinszky,
• Marina Caporaso,
• Katia Martina,
• Emanuela Calcio Gaudino and
• Giancarlo Cravotto

Beilstein J. Org. Chem. 2016, 12, 2364–2371, doi:10.3762/bjoc.12.230

• , which is an important component of DNA sequencing equipment [4]. p-Toluenesulfonyl (Ts) esters are still an irreplaceable leaving group for carbohydrates as well. The Ts → azide exchange in Ts-β-CD is effective in both solution and under high-energy ball milling (HEBM) conditions, whereas it is

Useful access to enantiomerically pure protected inositols from carbohydrates: the aldohexos-5-uloses route

• Felicia D’Andrea,
• Giorgio Catelani,
• Lorenzo Guazzelli and
• Venerando Pistarà

Beilstein J. Org. Chem. 2016, 12, 2343–2350, doi:10.3762/bjoc.12.227

Isosorbide and dimethyl carbonate: a green match

• Fabio Aricò and
• Pietro Tundo

Beilstein J. Org. Chem. 2016, 12, 2256–2266, doi:10.3762/bjoc.12.218

• with the presence of four oxygen atoms all in β position to each other that enhance the nucleophilicity of the hydroxy groups. Conclusion Among the top chemical opportunities from biorefinery carbohydrates D-sorbitol is a platform chemical of considerable interest that has led to intensive research in

• relevant products that might substitute fossil-based compounds and that are a poignant example of innovation at molecular level that nicely combines green chemistry reactions with biorefinery of carbohydrates. The DOE “Top 10” report [2]. Chemical structure of isosorbide and its epimers isomannide and

• carbohydrates and criteria of selection.a Synthesis of isosorbide by DMC chemistry.a Synthesis of dicarboxymethyl isosorbide (DCI) by DMC chemistry.a Synthesis of dimethyl isosorbide (DMI) by DMC chemistry.a

The direct oxidative diene cyclization and related reactions in natural product synthesis

• Juliane Adrian,
• Leona J. Gross and
• Christian B. W. Stark

Beilstein J. Org. Chem. 2016, 12, 2104–2123, doi:10.3762/bjoc.12.200

• of the present review is to assemble key results of these applications and illustrate scope and limitations. Review Oxidative cyclizations in the synthesis of carbohydrates, amino acids and polyketide natural products (+)-Anhydro-D-glucitol and (+)-D-chitaric acid (+)-Anhydro-D-glucitol (6) was

• THF forming reactions seem now to be firmly established methods for the application in complex total synthesis and are expected to deliver further exciting examples. More than 25 successful examples from the past three decades from different classes of natural products (including carbohydrates

p-Nitrophenyl carbonate promoted ring-opening reactions of DBU and DBN affording lactam carbamates

• Madhuri Vangala and
• Ganesh P Shinde

Beilstein J. Org. Chem. 2016, 12, 2086–2092, doi:10.3762/bjoc.12.197

• carbohydrate–protein interactions [25], ligation and surfactant properties [26][27]. Although p-nitrophenyl carbonates were extensively utilized in these reactions, the nucleophilicity of amidine bases towards these carbonates was not encountered so far. In continuation of our interest in carbohydrates [28][29

Synthesis and NMR studies of malonyl-linked glycoconjugates of N-(2-aminoethyl)glycine. Building blocks for the construction of combinatorial glycopeptide libraries

• Markus Nörrlinger,
• Sven Hafner and
• Thomas Ziegler

Beilstein J. Org. Chem. 2016, 12, 1939–1948, doi:10.3762/bjoc.12.183

• determine the coalescence temperature which resulted in calculated rotation barriers of 17.9–18.3 kcal/mol for the rotamers. Keywords: amino acids; carbohydrates; glycoconjugates; glycopeptides; N-(2-aminoethyl)glycine; Introduction The glycocalyx is a fringy or fuzzy polysaccharide layer coating most

Biosynthesis of oxygen and nitrogen-containing heterocycles in polyketides

• Franziska Hemmerling and
• Frank Hahn

Beilstein J. Org. Chem. 2016, 12, 1512–1550, doi:10.3762/bjoc.12.148

• [4]. Oxygen heterocycles are mainly found in carbohydrates, polyketides, peptides and terpenoids. Nitrogen heterocycles are part of peptides and alkaloids. Both can of course also occur in the respective hybrid natural products. Sulphur-containing heterocycles are present in few polyketides and more

Mutagenic activity of quaternary ammonium salt derivatives of carbohydrates

• Barbara Dmochowska,
• Karol Sikora,
• Anna Woziwodzka,
• Jacek Piosik and
• Beata Podgórska

Beilstein J. Org. Chem. 2016, 12, 1434–1439, doi:10.3762/bjoc.12.138

• mutagenicity test; quaternary ammonium salt; Introduction Carbohydrates and alditols occur broadly in nature and possess many biological functions essential to living organisms. Sugars not only contribute as energetic substances, but also serve as building materials for fungi, microbes, plants, and animals

• RNA and DNA, respectively. The mechanisms of molecular recognition and cell interaction are mostly explained by the interaction of carbohydrates with proteins, called lectins, exposed at the cell surface. This process, on the one hand, allows bacteria to interact with other cells during infection, but

A robust synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin

• Matthias Bender,
• Henrik Mouritsen and
• Jens Christoffers

Beilstein J. Org. Chem. 2016, 12, 912–917, doi:10.3762/bjoc.12.89

• compound with high purity. Keywords: carbohydrates; heterocyclic compounds; protective groups; riboflavin derivatives; ribose derivatives; Introduction The deazariboflavin cofactor F420 plays an important role in bacterial methanogenesis [1][2] and was – in contrast to other, ubiquitous biological redox

Synthesis and in vitro cytotoxicity of acetylated 3-fluoro, 4-fluoro and 3,4-difluoro analogs of D-glucosamine and D-galactosamine

• Štěpán Horník,
• Lucie Červenková Šťastná,
• Petra Cuřínová,
• Jan Sýkora,
• Kateřina Káňová,
• Roman Hrstka,
• Ivana Císařová,
• Martin Dračínský and
• Jindřich Karban

Beilstein J. Org. Chem. 2016, 12, 750–759, doi:10.3762/bjoc.12.75

• -2-azido-hexopyranoses have potential as synthons in oligosaccharide assembly. Keywords: amino sugars; cytotoxicity; fluorinated carbohydrates; fluorine; hexosamines; Introduction Derivatives of D-glucosamine (GlcN) and D-galactosamine (GalN) are essential amino sugar components of glycans in

Diastereoselective synthesis of new O-alkylated and C-branched inositols and their corresponding fluoro analogues

• Charlotte Collet,
• Françoise Chrétien,
• Yves Chapleur and
• Sandrine Lamandé-Langle

Beilstein J. Org. Chem. 2016, 12, 353–361, doi:10.3762/bjoc.12.39

• (Figure 1). These new inositol members could represent attractive tools for the development of further inositol analogues. Indeed, this arm could improve some properties as the lipophilicity for example and should allow the easy anchoring of various groups or molecules, such as carbohydrates for example

• biological evaluations but also as useful diastereoisomeric intermediates to anchor various groups such as carbohydrates, for example, opening up new avenues for the total synthesis of new inositol derivatives. The synthesized inositol derivatives with fluorinated arms could be more specifically interesting

Enabling technologies and green processes in cyclodextrin chemistry

• Giancarlo Cravotto,
• Marina Caporaso,
• Laszlo Jicsinszky and
• Katia Martina

Beilstein J. Org. Chem. 2016, 12, 278–294, doi:10.3762/bjoc.12.30

• excluded. A good example of a mixed reaction mechanism is the glycosylation reported by Tyagi et al. [88], where SN2 glycosylation seems to be dominant, with no neighbouring group participation, which is typical of glycosylation reactions of activated acetylated carbohydrates. A more pure SN2 reaction is

Spiro-fused carbohydrate oxazoline ligands: Synthesis and application as enantio-discrimination agents in asymmetric allylic alkylation

• Jochen Kraft,
• Martin Golkowski and
• Thomas Ziegler

Beilstein J. Org. Chem. 2016, 12, 166–171, doi:10.3762/bjoc.12.18

• ; carbohydrates; oxazolines; palladium; spiro compounds; Introduction The design of new chiral ligands for stereo-differentiating metal catalysts that enable asymmetric syntheses is still a highly active field of research in organic chemistry, for there is a continuously growing demand for enantiomeric pure

• building blocks for pharmaceuticals, agrochemicals or flavors. Carbohydrates are inexpensive and easy to obtain enantiomerically pure natural products and therefore, nearly ideal starting materials for ex-chiral pool syntheses. In addition, carbohydrates have significantly gained attention as ligands for

• metal complexes that enable asymmetric catalysis over the past decades, and an array of highly efficient privileged ligands for metal-catalyzed enantioselective syntheses have been derived from carbohydrates so far [1][2][3][4][5][6]. However, the enantioselective construction of C–C bonds, especially

Recent highlights in biosynthesis research using stable isotopes

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2015, 11, 2493–2508, doi:10.3762/bjoc.11.271

• from acetate (bold) and L-isoleucine (red) as deduced from labeling experiments. Labels introduced into the carbohydrates and methyl groups are omitted. Proposed biosynthetic assembly of clostrubin A (12). Bold bonds show intact acetate units. Proposed biosynthesis of aspirochlorine (20) via 18 and 19

Synthesis of D-fructose-derived spirocyclic 2-substituted-2-oxazoline ribosides

• Madhuri Vangala and
• Ganesh P. Shinde

Beilstein J. Org. Chem. 2015, 11, 2289–2296, doi:10.3762/bjoc.11.249

• spiro [42] 2-oxazolines [43] are limited, to the best of our knowledge. With our interest in the area of glycopeptides [44] and carbohydrates [45], and owing to the importance of ribosides in general and spiroribofuranoses [46] in particular for drug discovery, in this paper, we report the synthesis of

Towards inhibitors of glycosyltransferases: A novel approach to the synthesis of 3-acetamido-3-deoxy-D-psicofuranose derivatives

• Maroš Bella,
• Miroslav Koóš and
• Chun-Hung Lin

Beilstein J. Org. Chem. 2015, 11, 1547–1552, doi:10.3762/bjoc.11.170

• mimetics. Despite all the effort and the numerous GTs inhibitors identified, only a few achieved significant activity. On the basis of the previous investigations, a new class of GTs inhibitors imitating carbohydrates has been revealed [17]. These structurally modified carbohydrates are designed to

Cross-metathesis reaction of α- and β-vinyl C-glycosides with alkenes

• Ivan Šnajdr,
• Kamil Parkan,
• Filip Hessler and
• Martin Kotora

Beilstein J. Org. Chem. 2015, 11, 1392–1397, doi:10.3762/bjoc.11.150

• ; catalysis; carbohydrates; cross-metathesis; ruthenium; Introduction Natural and unnatural C-substituted glycosides are important compounds with a plethora of attractive biological properties and they often have been used as artificial DNA components [1]. Among various synthetic procedures providing C

Synthesis and evaluation of the biostability and cell compatibility of novel conjugates of nucleobase, peptidic epitope, and saccharide

• Dan Yuan,
• Xuewen Du,
• Junfeng Shi,
• Ning Zhou,
• Abdulgader Ahmed Baoum,
• Khalid Omar Al Footy,
• Khadija Omar Badahdah and
• Bing Xu

Beilstein J. Org. Chem. 2015, 11, 1352–1359, doi:10.3762/bjoc.11.145

• they constitute three key types of biomacromolecules–proteins, nucleic acids, and carbohydrates. Inspired by this molecular foundation resulted from evolution, we are developing biomaterials that consist of the covalent conjugates of these three classes of the basic building blocks of life. For example

Selected synthetic strategies to cyclophanes

• Sambasivarao Kotha,
• Mukesh E. Shirbhate and
• Gopalkrushna T. Waghule

Beilstein J. Org. Chem. 2015, 11, 1274–1331, doi:10.3762/bjoc.11.142

• 139 by using the Wurtz coupling as a key step (Scheme 20). Metathesis Alkyne metathesis reaction: In 2010, Murphy and Jarikote [139] have developed a useful protocol for assembling non-natural macrocyclic compounds containing carbohydrates. Compound 140 was prepared in several steps and was further

Terminal lipophilization of a unique DNA dodecamer by various nucleolipid headgroups: Their incorporation into artificial lipid bilayers and hydrodynamic properties

• Emma Werz and
• Helmut Rosemeyer

Beilstein J. Org. Chem. 2015, 11, 913–929, doi:10.3762/bjoc.11.103

• lipo-oligonucleotides. Keywords: lipid bilayer; lipo-oligonucleotides; nucleic acids; nucleolipids; Introduction For proper cell function, the biosynthetic lipophilization of proteins and carbohydrates, such as palmitoylation and farnesylation, is of decisive importance [1]. The same seems to be true

Glycodendrimers: tools to explore multivalent galectin-1 interactions

• Jonathan M. Cousin and
• Mary J. Cloninger

Beilstein J. Org. Chem. 2015, 11, 739–747, doi:10.3762/bjoc.11.84

• located on apposing faces of the dimer (Figure 1). Although individual binding interactions with carbohydrates are weak [8], ligands for galectin-1 typically possess an array of carbohydrates to enhance the binding affinity [1][9][10]. Galectin-1 binding to carbohydrates cross-links adjacent

Probing multivalency in ligand–receptor-mediated adhesion of soft, biomimetic interfaces

• Stephan Schmidt,
• Hanqing Wang,
• Daniel Pussak,
• Simone Mosca and
• Laura Hartmann

Beilstein J. Org. Chem. 2015, 11, 720–729, doi:10.3762/bjoc.11.82

• protein receptors are formed to control cell–cell recognition, cell adhesion and related processes. The aim of this work is to shed light on the principles of complex formation between surface anchored carbohydrates and receptor surfaces by measuring the specific adhesion between surface bound mannose on

• carbohydrates of the glycocalyx, a glycan coating enveloping prokaryotic or eukaryotic cells. By specific binding to cell receptors, the carbohydrate units of the glycocalyx control important processes such as cell adhesion, communication and inflammatory response [1]. For this reason great effort is set forth

• ligands are typically oligomers consisting of multiple subunits of varying complexity. When binding to receptors this leads to a receptor clustering or so-called glycocluster effect. However, multivalency even goes further: For example when cells form contact layers of surface anchored carbohydrates the