Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• not only a wide variety of polysaccharides including cellulose, agar, chitin, alginate, and xylan [8][9][10][11], but also plastics [4][12]. Progressing from their isolation and cultivation, natural product discovery from Microbulbifer bacteria is starting to gather steam [6][13][14]. The major

• activities [96]. BY17PV7 demonstrated wide substrate tolerance and good degradation effects for both polyM and polyG [98]. MtAl138 belongs to the polysaccharide lyase family 7 and is an endotype enzyme that produces di-, tri-, or tetrasaccharides from polyG and polyM [52]. Chitinases Chitin is a linear β-1,4

• -linked homopolymer of N-acetyl-β-ᴅ-glucosamine (GlcNAc), the second most abundant biomass on earth after cellulose (Figure 4). Approximately 1011 tons of chitin are produced annually in nature, about 70% of which originate from the ocean. Most of the chitin is recycled by bacteria and fungi as carbon and

Polymer and small molecule mechanochemistry: closer than ever

• José G. Hernández

Beilstein J. Org. Chem. 2022, 18, 1225–1235, doi:10.3762/bjoc.18.128

• -free ball milling has enabled to surpass the insolubility and recalcitrant reactivity of cellulose [36][37], chitin [38][39], and lignin (Figure 2) [40][41]. In addition to allowing solvent-free reactions, mechanical forces generated inside ball mills can depolymerize biomass through cleavage pathways

• ball mill (Figure 1c) enhances the depolymerization of acid-impregnated chitin more selectively towards glycosidic bond cleavage (i.e., backbone rupture) over amide bond breakage (i.e., deacetylation) [38][45]. Notably, the result is different for the reaction in solution, where scission of both bonds

• is observed [46]. This difference is believed to be related to the exertion of tensile forces along the glycosidic linkage of the polymer chain during ball milling, which may lower the activation energy for the depolymerization of chitin. Indeed, DFT calculations using the N-acetylglucosamine dimer

Synthesis of protected precursors of chitin oligosaccharides by electrochemical polyglycosylation of thioglycosides

• Md Azadur Rahman,
• Kana Kuroda,
• Hirofumi Endo,
• Norihiko Sasaki,
• Tomoaki Hamada,
• Hiraku Sakai and
• Toshiki Nokami

Beilstein J. Org. Chem. 2022, 18, 1133–1139, doi:10.3762/bjoc.18.117

• Engineering, Tottori University, 4-101 Koyamacho-minami, Tottori City, 680-8552 Tottori, Japan Koganei Corporation, 3-11-28 Midorimachi, Koganei City, 184-8533 Tokyo, Japan 10.3762/bjoc.18.117 Abstract The synthesis of protected precursors of chitin oligosaccharides by electrochemical polyglycosylation of

• electrochemical polyglycosylation is also discussed, based on the oxidation potential of the monomer and oligosaccharides. Keywords: electrochemical glycosylation; glucosamine; oligosaccharide; oxidation potential; polyglycosylation; Introduction Chitin oligosaccharides are partial structures of chitin, which

• from natural sources or by synthesis via chemical glycosylation [2]. Total syntheses of chitin and chitosan oligosaccharides based on conventional chemical glycosylation of protected monosaccharides as building blocks have already been reported. Convergent synthesis using oligosaccharide building

Green synthesis of C5–C6-unsubstituted 1,4-DHP scaffolds using an efficient Ni–chitosan nanocatalyst under ultrasonic conditions

• Soumyadip Basu,
• Sauvik Chatterjee,
• Suman Ray,
• Suvendu Maity,
• Prasanta Ghosh,
• Asim Bhaumik and
• Chhanda Mukhopadhyay

Beilstein J. Org. Chem. 2022, 18, 133–142, doi:10.3762/bjoc.18.14

• . Chitosan is one of the most abundant bio-based polymers in nature [9]. It is the N-deacetylated form of chitin found in industrial waste [10]. Chitosan is a broadly used natural polymer because of properties such as biocompatibility, low cost, and nontoxicity. It has diverse applications, such as drug

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

• observed for cellulose [67][79], while the multifluorinated compound formed considerably shorter platelets. Cellulose–xylan [80] and cellulose–chitin [81] hybrids were also obtained upon enzymatic polymerization of the respective dimers. An amino or azido functionality in the C-6 position allows for

• pattern. Although still lacking control over the polymer length, these compounds underscored the importance of well-defined polysaccharides to understand the microscopic properties of natural xylans and fuel advancements in plant cell-wall biology [102]. Glucosamine-based polysaccharides Chitin and

• chitosan Chitin is a linear polysaccharide composed of β(1–4)-linked 2-acetamido-2-deoxy-ᴅ-glucopyranose (GlcNAc) repeating units, which mainly exists in the exoskeleton of crustaceans and insects, as well as in the cell-wall of fungi [209][210]. Chitosan, its partially N-deacetylated analogue, has vast

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• , Otting and co-workers have recently developed a synthetic strategy, based on a continuous exchange cell-free system (CECF), in which a key chitin-binding mutant of release factor RF1 can be removed under conditions that maintain the full activity of the S30 extract, thereby minimizing the incidence of

Palladium nanoparticles supported on chitin-based nanomaterials as heterogeneous catalysts for the Heck coupling reaction

• Tony Jin,
• Malickah Hicks,
• Davis Kurdyla,
• Sabahudin Hrapovic,
• Edmond Lam and
• Audrey Moores

Beilstein J. Org. Chem. 2020, 16, 2477–2483, doi:10.3762/bjoc.16.201

• Mining and Materials Engineering, McGill University, Montreal, Quebec H3A 0E9, Canada 10.3762/bjoc.16.201 Abstract In this report, chitin and chitosan nanocrystals were used as biomass-based supports for Pd nanoparticles (NPs) used as a heterogeneous catalyst for the Heck coupling reaction. By using a

• benign conditions, outcompeting the use of other catalysts supported on biomass-based nanomaterials, including cellulose nanocrystals. These initial results show the potential for using chitinous nanomaterials as effective catalyst supports in cross-coupling reactions. Keywords: chitin; chitosan; Heck

• transformations [7][8][9]. Furthermore, the chiral nature of polysaccharides has also been used as a tool for enantioselective catalysis such as carbonyl hydrogenations and amino acid hydrolysis, proving the unique ability of these biomass-based supports [10][11]. Chitin is another type of biomass feedstock that

Mechanochemical amorphization of chitin: impact of apparatus material on performance and contamination

• Thomas Di Nardo and
• Audrey Moores

Beilstein J. Org. Chem. 2019, 15, 1217–1225, doi:10.3762/bjoc.15.119

• mechanochemical amorphization of chitin. We measured the crystallinity index of chitin after milling it in a vibration mill in an apparatus made of copper, aluminum, brass, tungsten carbide, zirconia, stainless steel, polytetrafluoroethylene (PTFE), or poly(methyl methacrylate) (PMMA). These materials offer a

• : amorphization; biomass; chitin; hardness; mechanochemistry; metal contamination; Introduction The last decade has seen a tremendous development in the field of mechanochemistry, which was notably covered in the New York Times in 2016 [1]. Yet, mechanochemistry is hardly a novel concept, since it is likely

• expedite polysaccharide hydrolytic cleavage [20][21][22][23]. Milling can also facilitate chitin depolymerization [24] and when used with base simultaneously deacetylate and depolymerize chitin [42]. One of the key processes in the context of biomass upgrading is amorphization. Indeed, both chitin and

Solid-state mechanochemical ω-functionalization of poly(ethylene glycol)

• Michael Y. Malca,
• Pierre-Olivier Ferko,
• Tomislav Friščić and
• Audrey Moores

Beilstein J. Org. Chem. 2017, 13, 1963–1968, doi:10.3762/bjoc.13.191

• the functionalization of premade polymers. Recently, Yan and co-workers used ball milling to deacetylate chitin to afford chitosan [30]. We now provide a proof-of-principle demonstration of mechanochemical ω-functionalization of α-protected methoxy-PEG (mPEG) with –COOH, –OTs, –NH2, –Br, and –SH

Selective enzymatic esterification of lignin model compounds in the ball mill

• Ulla Weißbach,
• Saumya Dabral,
• Laure Konnert,
• Carsten Bolm and
• José G. Hernández

Beilstein J. Org. Chem. 2017, 13, 1788–1795, doi:10.3762/bjoc.13.173

• reactions involving reactants of poor solubility. This characteristic feature of mechanochemistry has proven fundamental while dealing with chemically induced cleavage of biomaterials such as lignin [11][12], cellulose [13][14][15] or chitin [16]. In regard to lignin chemistry, solution-based lignin

Total synthesis of TMG-chitotriomycin based on an automated electrochemical assembly of a disaccharide building block

• Yuta Isoda,
• Norihiko Sasaki,
• Kei Kitamura,
• Shuji Takahashi,
• Sujit Manmode,
• Naoko Takeda-Okuda,
• Jun-ichi Tamura,
• Toshiki Nokami and
• Toshiyuki Itoh

Beilstein J. Org. Chem. 2017, 13, 919–924, doi:10.3762/bjoc.13.93

• Degradation of chitin into oligoglucosamines and glucosamine is an important biological process and at least several enzymes such as chitinases and glucosaminidases are involved. Various types of inhibitors such as PUGNAc [1], nagastatin [2], NAG-thiazoline (NGT) [3], and pochonicine [4], have already been

• synthesis of TMG-chitotriomycin (1) initiated from building blocks that were prepared by the degradation of chitin has been reported by Beau [10]; however, practical synthetic methods to provide TMG-chitotriomycin (1) and its derivative in preparative scale are still highly desirable. The automated

Fluorescent carbon dots from mono- and polysaccharides: synthesis, properties and applications

• Stephen Hill and
• M. Carmen Galan

Beilstein J. Org. Chem. 2017, 13, 675–693, doi:10.3762/bjoc.13.67

• [13][24]. Similarly, important carbohydrate-based biopolymers such as cellulose, chitin, chitosan, dextran, cyclodextrin, and hyaluronic acid, which differ not only in elemental composition, but also in chemo-physical properties, have also been successfully utilised in the preparation of CDs, where

• , readily available neutral carbohydrate such as glucose as the carbon source in combination with a nitrogen-containing molecule. Glucosamine hydrochloride, which is a byproduct from the hydrolysis of chitosan and chitin polysaccharides found on crustacean shells, bears an amine functionality at C-2 and

• molecules composed of monosaccharide units coupled together via glycosidic linkages to form long linear or branched chains. Some of the most common polysaccharides found in nature include cellulose, starch, glycogen or chitin [49]. Upon hydrolysis, these structures break down into smaller fragments such as

Interactions between cyclodextrins and cellular components: Towards greener medical applications?

• Loïc Leclercq

Beilstein J. Org. Chem. 2016, 12, 2644–2662, doi:10.3762/bjoc.12.261

• , polysaccharides serve also as structural components: cellulose for plants and chitin for arthropods. Moreover, saccharides and their derivatives play key roles in the immune system, fertilization, blood clotting, information transfer, etc. For instance, the 5-carbon monosaccharide ribose forms the backbone of the

Mutagenic activity of quaternary ammonium salt derivatives of carbohydrates

• Barbara Dmochowska,
• Karol Sikora,
• Anna Woziwodzka,
• Jacek Piosik and
• Beata Podgórska

Beilstein J. Org. Chem. 2016, 12, 1434–1439, doi:10.3762/bjoc.12.138

• . The polymers (oligosaccharides) of D-glucose found, for example, in wood (cellulose) and D-glucosamine present in shells of crabs and insects (chitin), are the widely known ones [1][2]. Another class of carbohydrate biopolymer derivatives – D-ribose and 2-deoxy-D-ribose – constitutes the backbone of

Natural products from microbes associated with insects

• Christine Beemelmanns,
• Huijuan Guo,
• Maja Rischer and
• Michael Poulsen

Beilstein J. Org. Chem. 2016, 12, 314–327, doi:10.3762/bjoc.12.34

• penetrate the insect integument and start the infection process. Apart from a variety of secreted proteases that digest the chitin-containing cuticle of the insect, secreted toxic metabolites are assumed to assist in overcoming host defenses and killing the host. Some entomopathogenic species, such as

Chemoselective O-acylation of hydroxyamino acids and amino alcohols under acidic reaction conditions: History, scope and applications

• Tor E. Kristensen

Beilstein J. Org. Chem. 2015, 11, 446–468, doi:10.3762/bjoc.11.51

• , although innovative, the method cannot be easily generalized to other O-acylations. However, the use of sulfonic acids in acidic O-acylations was instructive [29][30]. During the years 1979 to 1981, a number of Japanese scientists reported on chemical modification of chitin (a naturally occurring polymer

Multicomponent reactions in nucleoside chemistry

• Mariola Koszytkowska-Stawińska and
• Włodzimierz Buchowicz

Beilstein J. Org. Chem. 2014, 10, 1706–1732, doi:10.3762/bjoc.10.179

• the hydrogen transfer conditions using the Pd black–formic acid system. Only one of the two pure isomers 40 was found to bind to chitin synthase. Plant et al. reported another approach to uracil polyoxins via the Ugi reaction [82]. In this work, the desired products 44 were assembled from 2′,3

• amide resin as the amine-bearing component (Scheme 18) [84]. The synthesis of nikkomycin Z analogs 46 aimed in an examination of their ability to inhibit Candida albicans chitin synthases. The library consisting of 450 analogs 46 was obtained from: (i) reactions involving nucleoside aldehyde 41, Rink

• albicans chitin synthase 1 at the concentration of 10 µM. Among the most active analogs 46a–c, compound 46a showed a comparable activity (IC50 = 6.07 µM) as that determined for nikkomycin Z (IC50 = 9.49 µM). On the other hand, inhibitory activity of this compound toward Candida albicans chitin synthase 2

Carbohydrate PEGylation, an approach to improve pharmacological potency

• M. Eugenia Giorgi,
• Rosalía Agusti and
• Rosa M. de Lederkremer

Beilstein J. Org. Chem. 2014, 10, 1433–1444, doi:10.3762/bjoc.10.147

• and chitosan derivatives for pharmaceutical applications was described [22]. Chitosan is the polysaccharide obtained from the abundant chitin by alkali or enzymatic degradation. It consists of a backbone of β-(1→4)-linked D-glucosamine units with a variable degree of N-acetylation. The protonated