Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• ). As previously reported, Vs NnlA exhibited two major peaks, a lower molecular weight peak consistent with a dimer and a second peak consistent with a large oligomer [21]. By contrast, the chromatograms of the purified Ps, Mr, Ms, and Pd NnlA were dominated by a single peak ranging in molecular mass

• not change in samples containing reduced Vs NnlA compared with samples without Vs NnlA. Additionally, NO2− was not formed in these samples (Table S4, Supporting Information File 1). Alpha-fold model of NnlA A model of the Vs NnlA dimer was produced using AlphaFold2, which allows for predicting the

• °C in deoxygenated 30 mM tricine buffer at pH 7.5. Alpha-fold model of Vs NnlA dimer (cyan) overlayed with Pseudomonas aeruginosa (grey; PDB: 3VOL [35][36]) to estimate the position and orientation of the heme cofactor. Conserved residues in the distal heme pocket are labeled. Conserved basic

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• bisalkynylplatinum(II)–terpyridine clips [54]. The dimer showed photocatalytic activity in the photooxidation of a secondary amine to the corresponding imine that could be deactivated and reactivated by opening or closing the tweezers. Variations on multidentate N-donor ligands have also been developed by Lehn and

Mono or double Pd-catalyzed C–H bond functionalization for the annulative π-extension of 1,8-dibromonaphthalene: a one pot access to fluoranthene derivatives

• Nahed Ketata,
• Linhao Liu,
• Ridha Ben Salem and
• Henri Doucet

Beilstein J. Org. Chem. 2024, 20, 427–435, doi:10.3762/bjoc.20.37

• employ very simple reaction conditions, should be of interest to chemists looking for quick pathways to functionalized fluoranthenes. Experimental General Allylpalladium chloride dimer (98%) and 1,4-bis(diphenylphosphino)butane (dppb) (98%) were purchased from Aldrich. DMA (99+%) extra pure was purchased

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• corresponding boronic acid 9 and a Suzuki–Miyaura cross-coupling between 8 and 9 gave rise to dimer 10, followed by the oxidation of both acenaphthene units into 1,8-naphthalic anhydrides. Installation of the thiepine ring was achieved by a double nucleophilic aromatic substitution induced by sodium sulfide

• dinaphthooxepine bisimides [66], which are analogues of the dinaphthothiepine bisimides presented above with an oxygen atom substituting the sulfur atom (Scheme 9). Their synthesis was successfully achieved in two steps from the known intermediate 5,5’-linked 4-chloro-1,8-naphthalic anhydride dimer 11, already

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• of conjugate addition of a cathodically generated carbamate anion was ruled out, prompting us to consider that N-alkylation proceeded via a radical mechanism. On the other hand, the addition of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) led to the predominant formation of cyclized dimer 4 without N

• -alkylation, whereas the use of AcOH provided N-alkylated product 3 (Table 1, entries 5 and 6). When acetonitrile (MeCN) was used as the solvent, cyclized dimer 4 was obtained (Table 1, entry 7). Next, 1 was subjected to cyclic voltammetry (CV) measurements under varying conditions (Figure 2). An oxidation

• this case, intramolecular radical trapping by the uracil nucleobase was preferred, leading to the formation of the cyclized alkyl radical D. Continuous radical recombination furnished dimer 4. Conclusion We observed additive-controlled inter- and intramolecular chemoselectivity in the hydroamination of

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• with irreversible C–C fusions [7]. In phase 1, a [2 + 2] cycloadduct C120 dimer is formed, which was initially proposed to be with Cs symmetry, in contrast to the X-ray structure for the C120 dimer that shows D2h symmetry [3][9]. In phase 2, irreversible structural rearrangements occur leading to a

• % of the total encapsulation energy. As a consequence of the effective π−π interactions, the larger the contact between the fullerene dimer surface and the CNT wall the larger the encapsulation energy. This significant interaction is also apparent from an inspection of the electronic structure of the

• the dimerization of two neutral C60 molecules were also computed for comparison (Table 1). As products, we have considered dimer 1-D2h and dimer 1-Cs, which are products of reversible [2 + 2] cycloadditions (phase 1) between two [6,6]-bonds in the former case and, between a [6,6]-bond and a [6,5]-bond

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• -annelated IF-DTF 12 by removal of the tosyl (Ts) group under alkaline conditions, followed by nucleophilic substitution to incorporate the hexyl chain on the pyrrole. Furthermore, treatment of the IF-DTF ketone 4 with Lawesson’s reagent (using a recently established protocol [20]) yielded the large dimer 13

• wavelength. These compounds have blueshifted longest-wavelength absorptions relative to the donor–acceptor scaffolds incorporating a pyrrolo-annelated DTF unit. Of these compounds, the large dimer 13 stands out with a significantly redshifted and intense longest-wavelength absorption maximum (λmax at 574 nm

• reduction. The pyrrolo-annelated dimer 13 showed a reversible oxidation at +0.42 V followed by an irreversible oxidation at +1.01 V, and two reversible reductions at −1.48 V and −1.81 V. Here, the acceptor properties are not promoted by incorporating an acceptor unit as in 15, but instead by the

Beyond n-dopants for organic semiconductors: use of bibenzo[d]imidazoles in UV-promoted dehalogenation reactions of organic halides

• Kan Tang,
• Megan R. Brown,
• Chad Risko,
• Melissa K. Gish,
• Garry Rumbles,
• Phuc H. Pham,
• Oana R. Luca,
• Stephen Barlow and
• Seth R. Marder

Beilstein J. Org. Chem. 2023, 19, 1912–1922, doi:10.3762/bjoc.19.142

• , as the substrate (RX), anhydrous THF (without stabilizer) as the solvent, and (N-DMBI)2 or (Cyc-DMBI)2 as a stoichiometric reductant (0.5 equiv, assuming one electron is needed for each substrate molecule and that each dimer molecule contributes two electrons). Reaction outcomes were analyzed by GC

• remaining unidentified product may be R2 (C36H74), but this product is not easily detected by GC–MS. In sharp contrast to the case of benzyl derivatives, where the use of dimer reductants primarily affords R2 products, biaryls are not observed as dehalogenation products of aryl halides by dimeric reductants

• radicals [42][43], are known to proceed by two distinct pathways. When the dimer (D2) is relatively weakly bound, its dissociation to D• can be the initial step (“cleavage-first”), which is then followed by fast electron-transfer (ET) reactions (Scheme 2). On the other hand, in the “electron-transfer first

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• via [2 + 2] and [2 + 2 + 2] cycloadditions. In a closely related study conducted by Grill et al., the behavior of 2,3-dibromoanthracene (89) was examined on two distinct surfaces [Au(100) and Au(111)] (Scheme 19) [52]. Notably, on the Au(111) substrate, nearly equivalent quantities of dimer 91

• resulting from a [2 + 2] cycloaddition and trimer 90 formed via a [2 + 2 + 2] cycloaddition pathway were observed. In contrast, when applied to Au(100), only the dimer structure 91 was generated through the [2 + 2] cycloaddition process. In a recent study in this field, Izydorczyk et al. were able to

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• intermediates and anionic transition states on top of fullerenes dimers should thus induce a larger macrodipole which should in turn strengthen their binding to the expanded π system and thus increase anion–π catalysis (Figure 1B). Fullerene dimer 37 was equipped with the tethered tertiary amine needed to

• deprotonate the substrate 4 and produce the conjugate bases I and II as the first reactive intermediates directly on the active π surface (Figure 2 and Figure 7) [80]. Calibrated against triethylamine 23, fullerene dimer 37 catalyzed enolate addition with an A/D37/23 = 12.5. This is more than twice the A/D22

• /23 = 4.6 of the respective monomer 22, which was already best among fullerene monomers. In computational simulations, the positive maximum of the MEP surface next to the amine base was the same for dimer 37 (+13.9 kJ mol−1) and monomer 22 (+13.8 kJ mol−1), supporting that the dramatic increase in

Unprecedented synthesis of a 14-membered hexaazamacrocycle

• Anastasia A. Fesenko and
• Anatoly D. Shutalev

Beilstein J. Org. Chem. 2023, 19, 1728–1740, doi:10.3762/bjoc.19.126

• calculations was proposed. It involves nucleophilic attack of hydrazine on the C2 carbon of the pyrimidine ring followed by cleavage of the C2–N3 bond, dimerization of the bis-amidrazone formed, and macrocyclization of the dimer. The DFT calculations also showed that the hydrazine-promoted transformation of

Benzoimidazolium-derived dimeric and hydride n-dopants for organic electron-transport materials: impact of substitution on structures, electrochemistry, and reactivity

• Swagat K. Mohapatra,
• Khaled Al Kurdi,
• Samik Jhulki,
• Georgii Bogdanov,
• John Bacsa,
• Maxwell Conte,
• Tatiana V. Timofeeva,
• Seth R. Marder and
• Stephen Barlow

Beilstein J. Org. Chem. 2023, 19, 1651–1663, doi:10.3762/bjoc.19.121

• stable DMBI+ (1+) species, a hydrogen atom must be lost from the dopant, in some cases resulting in the incorporation of hydrogen-reduced side products into the semiconductor film [9], although in other cases it may be lost as H2 [8][10][11]. The first report of a (DMBI)2 dimer (12, Figure 1) was of 1a2

• more soluble than the iodides in THF, so were reductively dimerized to 12 in THF using Na:Hg, although reduction of 1i+PF6− failed to afford 1i2. As we have noted before for other 12 species, amides (V, Scheme 1) are encountered as both byproducts of dimer synthesis and dimer decomposition products [14

• molecular C2 symmetry, while the Y–C–C–Y torsion angles for 1h2 and 1e2 are 149.4° and 140.3°, respectively, and thus both intermediate between the perfectly staggered (180° torsion) and neighboring eclipsed conformation (120°). The imidazole rings in the previously reported and present dimer structures are

Tying a knot between crown ethers and porphyrins

• Maksym Matviyishyn and
• Bartosz Szyszko

Beilstein J. Org. Chem. 2023, 19, 1630–1650, doi:10.3762/bjoc.19.120

• to a dimer 37 was achieved using N,N-dimethylformamide, dimethyl sulfoxide, or acetonitrile. Interestingly, the dissolution of compound 37 in CHCl3, MeOH, or EtOH resulted in the interconversion to 36 within 1–2 days, as evidenced by 1H NMR spectroscopy. The Ravikanth group has developed an

• applications. Porphyrin and crown ether. Timeline demonstrating the contributions into the crown ether–porphyrin chemistry. Tetra-crowned porphyrin 1 and dimer 2 formed upon K+ binding. meso-Crowned 25-oxasmaragdyrins 3a–c and their boron(III) complexes (3a–c)-BF2. CsF ion pair binding by 5. The molecular

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• the CILs PDIN-FB, PDIN-B, CN-PDIN-FB, and CN-PDIN-B. Evolution of the dimer tPDI2N-R [23] as an NFA to PDIN-B/PDIN-FB monomers to serve as CILs, where the addition of nitrile functional group on the monomeric PDIN-B/PDIN-FB materials serve to stabilize FMOs. a) Structures of PDIN-FB, PDIN-B, CN-PDIN

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• action of laccase enzymes [5]. The radical then rearranges to form a semiquinone radical and reacts rapidly with a neighboring urushiol molecule to produce a biphenyl dimer. The dimers further polymerize to form the polymer [8]. Radical processes also occur in oceans. The mussel attachment system

Enabling artificial photosynthesis systems with molecular recycling: A review of photo- and electrochemical methods for regenerating organic sacrificial electron donors

• Grace A. Lowe

Beilstein J. Org. Chem. 2023, 19, 1198–1215, doi:10.3762/bjoc.19.88

Linker, loading, and reaction scale influence automated glycan assembly

• Marlene C. S. Dal Colle,
• Manuel G. Ricardo,
• Nives Hribernik,
• José Danglad-Flores,
• Peter H. Seeberger and
• Martina Delbianco

Beilstein J. Org. Chem. 2023, 19, 1015–1020, doi:10.3762/bjoc.19.77

• observed in the chromatograms of the crudes (Figure 3B). MS analysis showed the presence of capped linker (*), capped dimer (†), and Lev-containing dimer (‡) (see Figures S5 and S7 in Supporting Information File 1). No significant variations were noticed within each series of experiments, with slightly

• showed the presence of capped linker (*), capped dimer (†), and Lev-containing dimer (‡). The monosaccharides are represented following the symbol nomenclature for glycans (SNFG). Supporting Information Supporting Information File 120: Experimental procedures and characterization data. Funding We thank

Construction of hexabenzocoronene-based chiral nanographenes

• Ranran Li,
• Di Wang,
• Shengtao Li and
• Peng An

Beilstein J. Org. Chem. 2023, 19, 736–751, doi:10.3762/bjoc.19.54

• pursuit of HBC-tetramer-based supertwistacene (compound 115 in Scheme 12), Wang and co-workers synthesized a chiral HBC-dimer 46 [46], in which two HBC units structurally shared one benzene ring (Scheme 6). 1,4-Bis((4-(tert-butyl)phenyl)ethynyl)benzene reacted with tetracyclone 2 through a two-fold Diels

• the P,P, and M,M enantiomers. The isomerization barrier was determined as 44.7 kcal/mol at 260 °C by HPLC analysis. Meanwhile, Campaña and co-workers reported a similar chiral, tropone-containing HBC-dimer 53 [47]. Ketone 47 was transformed to compound 48 by reacting with 1-iodo-4-(phenylethynyl

• trimethylsilylacetylene and monobromo 78 afforded HBD-dimer 79. Then the Diels–Alder reaction of compound 79 and tetracyclone 80 gave compound 81 in a medium yield. Due to the crowdedness of adjacent HBC units, a chiral [7]helicene 82 was formed during the Scholl reaction of precursor 81. Campaña and co-workers

Cassane diterpenoids with α-glucosidase inhibitory activity from the fruits of Pterolobium macropterum

• Sarot Cheenpracha,
• Ratchanaporn Chokchaisiri,
• Lucksagoon Ganranoo,
• Sareeya Bureekaew,
• Thunwadee Limtharakul and
• Surat Laphookhieo

Beilstein J. Org. Chem. 2023, 19, 658–665, doi:10.3762/bjoc.19.47

• resulted in the isolation of one new cassane diterpenoid, 14β-hydroxycassa-11(12),13(15)-dien-12,16-olide (1), one new caged cassane diterpenoid dimer featuring a 6/6/6/6/6/5/6/6/6 nonacyclic ring system, 6′-acetoxypterolobirin B (3), and one known compound (Figure 1). Results and Discussion The fruits of

• diterpenoid dimer with unique 6/6/6/6/6/5/6/6/6 nonacyclic ring system. The minor difference was the additional acetoxy group (δH 2.10) at C-6′. This conclusion was suggested by the HMBC correlations (Figure 2) from H-6′ to 6′-OCOCH3 (δC 170.4) and C-10′ (δC 36.8), and from H3-20′ to C-5′ (δC 55.1) and C-10

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• Information File 1). Compound Phen-Py-1 showed high, micromolar/submicromolar affinities for all examined polynucleotides. The binding of Phen-Py-1 to polynucleotides possibly led to the unstacking of intramolecular pyrene–phenanthridine dimer and consequent excimer fluorescence quenching independently of the

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

Transition-metal-catalyzed C–H bond activation as a sustainable strategy for the synthesis of fluorinated molecules: an overview

• Louis Monsigny,
• Floriane Doche and
• Tatiana Besset

Beilstein J. Org. Chem. 2023, 19, 448–473, doi:10.3762/bjoc.19.35

• 30% yield. A careful monitoring of the reaction unveiled the rapid formation of the CF3SeSeCF3 dimer, which could be the active trifluoromethylselenolating reagent in this transformation. In 2022, Magnier, Billard and co-workers applied the previous methodology to the trifluoromethylselenolation of

Mechanochemical solid state synthesis of copper(I)/NHC complexes with K₃PO₄

• Ina Remy-Speckmann,
• Birte M. Zimmermann,
• Mahadeb Gorai,
• Martin Lerch and
• Johannes F. Teichert

Beilstein J. Org. Chem. 2023, 19, 440–447, doi:10.3762/bjoc.19.34

• procedure: steel vessel (12 mL), 6 steel balls (1 cm diameter), 450 rpm, 4 h). (dimer = [(NHC)2Cu+]Cl−). Supporting Information Supporting Information File 36: General procedures, experimental details, analytical data and copies of NMR spectra. Acknowledgements Prof. Dr. Martin Oestreich (TU Berlin) is

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• ether moiety. The best result was obtained when phenol 101 was subjected to anodic oxidation, leading to the formation of spiro-dimer 102 in 61% yield. Protection of the alcohol using TBSOTf followed by cyclic ether cleavage and re-aromatization gave compound 104. Subsequent dehalogenation followed by

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• ascorbate in DMSO (Scheme 9). According to UV–vis and circular dichroism (CD) spectrum measurements, the authors state that the formation of the dimer of porphyrin 50 can be attributed to DNA hybridization and through-space electronic interactions. In this investigation, it was found that the DNA serves as

• -porphyrin and copper-corrole moieties upon photoexcitation. Moreover, the theoretical calculations suggested that the porphyrin moiety acted as a donor while the corrole unit acted as an acceptor in dimer 60. Recently S. Y. Yap and co-workers [38] used “click chemistry” to link a water-soluble porphyrin