Enantioselective radical chemistry: a bright future ahead

• Anna C. Renner,
• Sagar S. Thorat,
• Hariharaputhiran Subramanian and
• Mukund P. Sibi

Beilstein J. Org. Chem. 2025, 21, 2283–2296, doi:10.3762/bjoc.21.174

• individually or synergistically with other catalytic systems. Enzymatic catalysis can pose challenges including enzyme engineering, reaction scale-up, etc. but is optimal in terms of the toxicity profile of the reaction conditions. Biomolecules such as enzymes are attractive candidates for efficient and

• , particularly involving photoredox catalysts, have led to the emerging area of photoenzymatic catalysis. Several new modes of activation successfully catalyzed by enzymes have been demonstrated [71][72][73][74]. Notable photoenzymatic reactions involving radical cyclizations have been reported. In one

• , organocatalysts, transition-metal complexes, and enzymes. In many cases, low catalyst loadings have been achieved, especially in transition-metal catalyzed, photoredox, and biocatalytic methods. Photoredox catalysis has had a tremendous impact on the field of organic radical chemistry. In many modern radical

Research towards selective inhibition of the CLK3 kinase

• Vinay Kumar Singh,
• Frédéric Justaud,
• Dabbugoddu Brahmaiah,
• Nangunoori Sampath Kumar,
• Blandine Baratte,
• Thomas Robert,
• Stéphane Bach,
• Chada Raji Reddy,
• Nicolas Levoin and
• René L. Grée

Beilstein J. Org. Chem. 2025, 21, 2250–2259, doi:10.3762/bjoc.21.172

• last 25 years and more than 400 orally effective protein kinase inhibitors are in clinical trials worldwide [4][5]. However, and despite this high interest, the function in human biology of approximately one third of the kinase members is poorly understood [6]. These enzymes are classified as “dark

C2 to C6 biobased carbonyl platforms for fine chemistry

• Jingjing Jiang,
• Muhammad Noman Haider Tariq,
• Florence Popowycz,
• Yanlong Gu and
• Yves Queneau

Beilstein J. Org. Chem. 2025, 21, 2103–2172, doi:10.3762/bjoc.21.165

• biomass-based molecule and widely used building block in the food industry as flavoring compound. It can be synthesized from diacetyl by reduction using enzymes such as Aerobacter aerogenes [102] or thiamine diphosphate-dependent lyase (ThdP-lyase) [103]. The biotechnological production of chiral acetoin

• acid, fumaric acid and ʟ-aspartic acid by biocatalysis in 91%, 79%, 94%, 97% yield, respectively, in the presence of enzymes such as maleate hydratase, maleate cis–trans isomerase, fumarase, or ʟ-aspartase [155]. C5 biobased carbonyl platforms Furfural Furfural is a versatile biobased C5 platform

Bioinspired total syntheses of natural products: a personal adventure

• Zhengyi Qin,
• Yuting Yang,
• Nuran Yan,
• Xinyu Liang,
• Zhiyu Zhang,
• Yaxuan Duan,
• Huilin Li and
• Xuegong She

Beilstein J. Org. Chem. 2025, 21, 2048–2061, doi:10.3762/bjoc.21.160

• functionalities in a complex framework are formidable challenges for mankind since such transformations in nature are precisely induced by enzymes. Bioinspired functionalization of C–H bond in total synthesis is rarely developed and it represents another challenge, despite numerous methodologies have been

• invented. Moreover, bioinspired total synthesis involving visible light and enzymes are new significant trends in this field, and these techniques have demonstrated great power in achieving unprecedented selectivity and reactivity. Since nature still prevails in rapid generating molecular complexity and

α-Ketoglutaric acid in Ugi reactions and Ugi/aza-Wittig tandem reactions

• Vladyslav O. Honcharov,
• Yana I. Sakhno,
• Olena H. Shvets,
• Vyacheslav E. Saraev,
• Svitlana V. Shishkina,
• Tetyana V. Shcherbakova and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2021–2029, doi:10.3762/bjoc.21.157

• as low toxicity of these substances [42]. Biological activity screening also suggests that quinoxalinone-based compounds can inhibit aldose reductase [43], α-amylase and α-glucosidase [44], as well as key enzymes involved in the processes of saturated fatty acid conversion [45] and glycogenolysis [46

Enantioselective desymmetrization strategy of prochiral 1,3-diols in natural product synthesis

• Lihua Wei,
• Rui Yang,
• Zhifeng Shi and
• Zhiqiang Ma

Beilstein J. Org. Chem. 2025, 21, 1932–1963, doi:10.3762/bjoc.21.151

• been developed, employing enzymes, metal complexes, or organocatalysts to convert prochiral or meso precursors into chiral motifs. Different from other strategies constructing chiral centers by formation of a new chemical bond at the central carbon, enantioselective desymmetrization is achieved through

• high enantioselectivity. However, since an enzymatic reaction generally produces only one of the two enantiomers, extensive enzyme screening is often required to access the desired enantiomer. Among various types of enzymes, lipases have proven to be efficient for the desymmetrization of 1,3-diols

• includes two enzymes, CAL-A and CAL-B [35][36]. Although a previous report [27] indicated that the desymmetrization of prochiral diol 2 with CAL was ineffective, the Shishido group prepared optically active compound (S)-11 via CAL-catalyzed asymmetric transesterification of the structurally similar diol 10

Systematic pore lipophilization to enhance the efficiency of an amine-based MOF catalyst in the solvent-free Knoevenagel reaction

• Pricilla Matseketsa,
• Margret Kumbirayi Ruwimbo Pagare and
• Tendai Gadzikwa

Beilstein J. Org. Chem. 2025, 21, 1854–1863, doi:10.3762/bjoc.21.144

• enhance covalent and/or acid–base catalysis via any combination of non-covalent interactions (hydrogen bonding, π–π stacking, lipophilic interactions, etc) [4][5][6]. Inspired by enzymes, Nature's most efficient catalysts, chemists have long endeavored to synthesize catalytic materials in which multiple

• catalysis have focused on lipophilization to prevent water-based catalyst decomposition, with only a few investigating how lipophilic pores surfaces can increase catalyst efficiency [32][33], despite enzymes employing such a strategy. The lipophilicity of enzyme active sites tends to improve reaction rates

• . This trend suggests that the lipophilic surfaces may destabilize hydrophilic intermediates, promoting faster conversion of HPMM to BMN, similar to the ground-state destabilization of polar substrates observed in enzymes with lipophilic pockets [54][55]. It should be noted that this result is in

Research progress on calixarene/pillararene-based controlled drug release systems

• Liu-Huan Yi,
• Jian Qin,
• Si-Ran Lu,
• Liu-Pan Yang,
• Li-Li Wang and
• Huan Yao

Beilstein J. Org. Chem. 2025, 21, 1757–1785, doi:10.3762/bjoc.21.139

• or guest molecules are altered upon exposure to specific stimuli, such as light, pH changes, or enzymes. This modification induces the disassembly of the host–guest complex, thereby releasing the encapsulated drugs. Fundamentally, this mechanism relies on controlling the assembly and disassembly

• of supramolecular interactions [33][34]. Different external stimuli, including pH changes, enzymes, light irradiation, hypoxia, and multi-stimuli responses, can alter the supramolecular structure or binding affinity to activate the opening and closing of the nano-valves. In addition to the three

• release of drugs is one of the most important applications of stimulus-responsive supramolecular systems and contributes to targeted therapy. Drugs are loaded into supramolecular nanosystems formed by self-assembled host–guest systems. Under specific stimuli (light, enzymes, hypoxia, pH values, etc

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• tentative biosynthesis follows that of pseudomonine, a non-ribosomally synthesized isoxazolidone produced by P. fluorescens. The previous studies on the biosynthesis revealed seven genes, three non-ribosomal peptide synthases (Pms D, E, G) and four precursor biosynthetic enzymes (Pms A, B, C, F) [23][24][25

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• impact the outcome. Subsequently, separation of 84 from 85 was explored using various lipases and an esterase. However, preliminary experiments with these enzymes did not yield satisfactory results. The focus then shifted to route B, utilizing methyl 2,4,6-trimethyloctanoate 88 as the starting material

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Luc Van Meervelt,
• Do Thi Thao and
• Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

• eliminate invading bacteria via the inhibition of metabolic enzymes and DNA destruction. However, overexpression of iNOS results in the overproduction of NO which is associated with septic shock and tissue damage [6]. Therefore, inhibition of iNOS could be considered a potential therapeutic strategy for

• focusing on the cytochrome P450 enzyme system, particularly the CYP3A4 and CYP2D6 isoforms, which are responsible for metabolizing over 75% of the examined compounds [32]. Inhibition of these enzymes can result in elevated drug concentrations within the bloodstream due to reduced metabolism. The data in

New advances in asymmetric organocatalysis II

• Radovan Šebesta

Beilstein J. Org. Chem. 2025, 21, 766–769, doi:10.3762/bjoc.21.60

• commonly defined as a form of catalysis where a small organic molecule, an organocatalyst, accelerates a chemical reaction. Unlike previously regarded traditional catalysts involving metals or enzymes, organocatalysts are composed of nonmetal elements, such as carbon, hydrogen, nitrogen, oxygen, phosphorus

Beyond symmetric self-assembly and effective molarity: unlocking functional enzyme mimics with robust organic cages

• Keith G. Andrews

Beilstein J. Org. Chem. 2025, 21, 421–443, doi:10.3762/bjoc.21.30

• , chemists have made use of selectively reactive chemicals by handling them, individually, in unreactive bottles. Meanwhile, Nature has learned to convert mixtures of unreactive chemicals by handling them in selectively reactive bottles (enzymes). Only the latter approach offers the efficiency, rate

• -accelerations (1019) [1], tolerance of contaminants, and selectivity associated with the power of enzymes. It is for this reason that I have sought to introduce supramolecular approaches into my organocatalysis [2]. From thermodynamics, there are two components to catalysis: organization (entropic) and

• nucleophile and electrophile) [5][6][7][8][9][10][11][12]. Crucially, enzymes organize their polarization – they achieve both components in tandem. Supramolecular chemists have made significant advances in cavity catalysis [13][14][15][16][17][18][19][20][21][22][23][24] – albeit slowly [25] – but have

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• , usually proteins or lipids by the process of glycosylation producing glycoproteins or glycolipids, respectively. Nature executes these processes by enzymatic pathways [18] and is often flawless in its desired output. But the scarcity and the cumbersome purification of natural enzymes limit the use of

Synthesis, structure, ionochromic and cytotoxic properties of new 2-(indolin-2-yl)-1,3-tropolones

• Yurii A. Sayapin,
• Eugeny A. Gusakov,
• Inna O. Tupaeva,
• Alexander D. Dubonosov,
• Igor V. Dorogan,
• Valery V. Tkachev,
• Anna S. Goncharova,
• Gennady V. Shilov,
• Natalia S. Kuznetsova,
• Svetlana Y. Filippova,
• Tatyana A. Krasnikova,
• Yanis A. Boumber,
• Alexey Y. Maksimov,
• Sergey M. Aldoshin and
• Vladimir I. Minkin

Beilstein J. Org. Chem. 2025, 21, 358–368, doi:10.3762/bjoc.21.26

• equation formalism (IEFPCM) [38]. Biological experiments The MTT colorimetric test for cell viability assessment is based on the reduction by NADPH-H-dependent cellular oxidoreductase enzymes of the tetrazolium dye 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, which has yellow color, into

Synthesis, characterization, antimicrobial, cytotoxic and carbonic anhydrase inhibition activities of multifunctional pyrazolo-1,2-benzothiazine acetamides

• Ayesha Saeed,
• Shahana Ehsan,
• Muhammad Zia-ur-Rehman,
• Erin M. Marshall,
• Sandra Loesgen,
• Abdus Saleem,
• Simone Giovannuzzi and
• Claudiu T. Supuran

Beilstein J. Org. Chem. 2025, 21, 348–357, doi:10.3762/bjoc.21.25

• moiety was beneficial to optimize therapeutic activity of different analogs with lesser adverse effects [32]. Amide linkages are a common drug feature that comprises about 25% of the most prescribed and vended medication [33]. Mimicking biologically relevant structural features of proteins and enzymes

• Martínez-Montiel and colleagues in 2023 [57]. Analyses were carried out in-house using recombinant enzymes as described. Enzyme concentrations (5–12 nM) used in these assays were the same as previously reported [57][61]. An overview of previously synthesized 1,2-benzothiazines [36][37][38][39]. An example

Red light excitation: illuminating photocatalysis in a new spectrum

• Lucas Fortier,
• Corentin Lefebvre and
• Norbert Hoffmann

Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22

Emerging trends in the optimization of organic synthesis through high-throughput tools and machine learning

• Pablo Quijano Velasco,
• Kedar Hippalgaonkar and
• Balamurugan Ramalingam

Beilstein J. Org. Chem. 2025, 21, 10–38, doi:10.3762/bjoc.21.3

• recommended retrosynthesis provided by the user. The enhancements in RoboRXN assist chemists in predicting the environmental impact of chemical processes, and the new AI model also helps identify more environmentally friendly enzymes for chemical reactions. Although RoboRXN has demonstrated the ability to

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• biomolecules like DNA and lipids. Lipid peroxidation and membrane disruption can cause random cross-linking, resulting in cell death and the fragmentation of proteins and enzymes. Elevated concentrations of reactive oxygen species (ROS) from various molecular processes contribute to the oxidation of proteins

• leading proposal to explain AD etiology. Based on this hypothesis, compounds that inhibit γ-secretase, one of the enzymes responsible for forming Aβ, are potential therapeutics for AD. In 2024, Fragkiadakis et al. [47] developed a rapid synthesis of benzodioxepinones. The attention was focused on the

• benzodioxepinones 12 in all cases (Scheme 11). The synthesized compounds demonstrated excellent drug-like features. Parkinson disease (PD) Knoevenagel–Michael addition/cyclization (MCR 3 + 2): Sirtuins, a group of enzymes that rely on NAD+ to function as protein deacetylases, have garnered attention across multiple

Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond

• Thomas Ma and
• John Chu

Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253

• corresponding nucleic acid sequence. Proteinaceous enzymes then go on to catalyze biosynthetic reactions that put together small molecule building blocks (BB) to generate natural products with extremely diverse chemical structures. Because the intricacy of this process is not fully understood, scientists still

• need to wait for enzymes to complete the entire course of biosynthesis, and then characterize chemical structure of the final natural product. While a generalized algorithm is not yet available, scientists in recent years have made some headways toward predicting the chemical structure of a natural

• the discovery of a new NRP. Conversely, every “unpredictable” A domain, if its substrate specificity were to be experimentally determined, is guaranteed to be a new datapoint. In fact, various in vitro substrate characterization assays that studied A domains as stand-alone enzymes have been reported

N-Glycosides of indigo, indirubin, and isoindigo: blue, red, and yellow sugars and their cancerostatic activity

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 2840–2869, doi:10.3762/bjoc.20.240

• , and Parkinson's disease, cardiovascular diseases, inflammation, AIDS and others have their origin in context with the activities of protein kinases, such as glycogen synthase kinase-3 (GSK-3β) and cyclin-dependent kinases (CDK’s). The phosphorylation of the amino acid moieties of several enzymes is

Young investigators in natural products chemistry, biosynthesis, and enzymology

• Jeffrey D. Rudolf,
• Lena Barra and
• Takayoshi Awakawa

Beilstein J. Org. Chem. 2024, 20, 2720–2721, doi:10.3762/bjoc.20.229

• . Their privileged structures have led organic and bioorganic chemists to develop methods to construct them. Our fundamental knowledge in enzymology is continually expanded by enzymes involved in natural products biosynthesis, as their production requires evolved enzymes to perform chemical reactions

• clusters, and enzymes, development of chemical probes, biocatalysis and chemoenzymatic total synthesis, enzymatic mechanisms, and computational investigations of chemical structures and reactions. All of the major classes of natural products are represented here: nonribosomal peptides, ribosomally

Tandem diazotization/cyclization approach for the synthesis of a fused 1,2,3-triazinone-furazan/furoxan heterocyclic system

• Yuri A. Sidunets,
• Valeriya G. Melekhina and
• Leonid L. Fershtat

Beilstein J. Org. Chem. 2024, 20, 2342–2348, doi:10.3762/bjoc.20.200

• products and pharmacologically active molecules. For example, nucleic acids, proteins and enzymes, hormones and vitamins, essential for the functioning of a living organism, also contain nitrogen frameworks [1][2]. Besides that, nitrogen-containing compounds are widely used in medicine as antibiotics

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

• . Keywords: catalyst design; machine learning; modelling; organocatalysis; selectivity prediction; Introduction Since the beginning of the 21st century, organocatalysts [1] have established themselves as a third group of homogeneous catalysts, next to biocatalysts [2] (enzymes) and transition metal-based

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• established itself as a successful tool in organic synthesis. A particularly fast technique for screening enzymes is the in vitro expression or cell-free protein synthesis (CFPS). The system is based on the transcription and translation machinery of an extract-donating organism to which substrates such as

• tested additives. Keywords: cell-free protein synthesis; cGAS; Escherichia coli cell-free extract; sfGFP; TX-TL; Introduction In addition to other applications such as biomanufacturing or biosensing, cell-free protein synthesis (CFPS) of enzymes has established itself as a tool for rapid screening of

• water, is better accepted than DMSO. In vitro thscGAS-sfGFP production with additives The CPFS system used, or CFPS in general, is not further optimized for the production of thscGAS-sfGFP or other specific enzymes. By default, GFP is generally used as a model protein to optimize the composition of CFPS