Three-component N-alkenylation of azoles with alkynes and iodine(III) electrophile: synthesis of multisubstituted N-vinylazoles

• Jun Kikuchi,
• Roi Nakajima and
• Naohiko Yoshikai

Beilstein J. Org. Chem. 2024, 20, 891–897, doi:10.3762/bjoc.20.79

• difunctionalization reaction to afford the product 4ag in 62% yield. While sluggish, trimethylsilylacetylene was selectively azolated at the terminal position (see 4ah), which could be rationalized by the better stabilization of a partial positive charge at this position by the β-silyl substituent. Finally, an

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• , enol ethers, and enamides, proved unproductive in generating the anti-Markovnikov product [90]. The authors attribute this outcome to the high stabilization of the corresponding cations from these substrates, rendering them unresponsive to nucleophilic attack by the chloride anion. Notably, neither the

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• ]. Actually, the presence of solutes consisting of water and proteins improves the stability of conformation 2. This stabilization is explained partly by the formation of hydrogen bonds between water molecules and PASE. Conformation 2 increases the number of sites where hydrogen bonds can form with water

• molecules because the chain portion of PASE turns upward. Therefore, the stabilization energy of hydrogen-bond formation is greater in conformation 2 than in conformation 1. To improve the stability of conformation 2, hydration effects by electrostatic interactions between PASE and the solvent are also

• (1.63 eV), than that of conformation 2, which is about 1.28 eV. The stabilization of conformation 1 partly comes from interaction between the succinimidyl ester part and graphene. There are other C–C single bonds in the alkyl chain, such as those shown by the dashed and dotted lines in Figure 1a

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• ligand (such as pyridine or pyrazine), valence tautomerism from ligand-centered oxidation to a metal-centered one is achieved due to the stabilization of an octahedral Ni(III). These properties allow the tweezers to reach six distinct and stable states by playing with three orthogonal stimuli that are

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• the three-component alkylacylation of olefins [108]. Alternatively, NHC catalysts can mediate the generation of radical intermediates from NHPI esters via the stabilization of a photoactive EDA complex. In 2020, Wang and Chen reported a photochemical C(sp3)-heteroatom coupling reaction of NHPI esters

• addition of catalyst NHC-2 an improvement of the reaction yield from 36% to 63% was observed. The authors proposed that the addition of the NHC catalyst facilitates the formation of EDA complex 151. In addition, it is thought that the stabilization imparted by the NHC catalyst is crucial in the subsequent

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• binding specificity with orthogonal methods, we used a thermal shift assay. Herein, the binding of ligands is assessed by the stabilization of the protein, measured by a denaturation curve. Both the protein produced in mammalian and in bacterial cells exhibited similar melting temperatures here, of

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• behavior was explained by the large energy gap between the ground states of the E- and Z-forms of indigo as well as low activation energy of inversion for derivatives 13. In the same year, Nielsen, Hecht and co-workers achieved a remarkable stabilization of the Z-isomer of N,N'-disubstituted indigo 24 by

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• ][33][34][37][39][43][44][46]. During a study of a possible influence of remote acyl protective groups [23] on the sialylation outcome (which could become possible through participation in stabilization of glycosyl cation [24][47][48] in a conformation with all-axial substituents in the pyranose ring

• versus α:β = 13:1 for 2). One could speculate that a more nucleophilic carbonyl oxygen of the chloroacetyl group at O-9 in sialyl donor 2 might participate in a stabilization of the intermediate glycosyl cation from the α-side (as we discussed earlier [52][53]) diminishing the α/β ratio. Conversely, at

• putative participation in stabilization [52][53] of the glycosyl cation. More importantly, in our opinion, this result indicates the existence of unexpected difficulties in the determination of relative reactivities of glycosyl donors (vide infra). Discussion It is generally believed that the molecular

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• toluene. This phenomenon aligns with the notion that the TICT states experience stabilization with increasing solvent polarity. Conversely, in contrast to 68–70, and 71, a TCBD derivative 72 incorporating a tetraphenylethylene (TPE) moiety exhibited no emission in toluene, possibly due to the presence of

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• the subsequent irreversible C–C fusions occurring in phase 2 are proposed with the help of accelerated Car–Parrinello MD simulations. Results and Discussion Nanotube-C60 interaction: stabilization of the peapod First, we estimated the size of the stabilizing interaction that holds the peapod, that is

• -Cs, the stabilization of this complex is significantly more important for the radical cation (around 20 kcal mol−1) than for the neutral complex (less than 10 kcal mol−1). To reach intermediate I-1, the singly-bonded dimer, a transition state TS-1 has to be overcome. The barrier for the radical

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• ). As expected, previous aromatic micelle (AA)n (1.0 mM based on AA) featuring multiple ionic side-chains showed a significantly higher ZP of 48.9 mV. The ZP of (PA-OCH3)n largely increased upon encapsulation of C60 (46.7 mV) and s-CNT (43.2 mV), due to the stabilization of the host–guest composites

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• partial stabilization of the binding by H-bonds, also in agreement with the MM/GBSA binding energy trend. On the way back, at window 8, the ligand establishes most of the native contacts which also correspond to the increase of the number of H-bonds established. This points out that several stabilized and

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• . These include the incorporation of heteroatoms within the acene backbone [7][8], stabilization of the acene core structure through the integration of diverse units [9][10], and the introduction of bulky substituents [11]. These approaches aim to maintain the desirable electronic properties of acenes

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• , stands for the stabilization of anionic transition states on π-acidic aromatic surfaces. Anion–π catalysis on carbon allotropes is particularly attractive because high polarizability promises access to really strong anion–π interactions. With these expectations, anion–π catalysis on fullerenes has been

• ] are deprotonated, and tautomers I and II add to an enolate acceptor. For anion–π catalysis, nitroolefins like 5 [60] were convenient acceptors because they are compatible with asymmetric catalysis, and because stabilization of intermediate III by privileged nitronate-π interactions drives the reaction

• diastereoselectivity ratio with exo/endo21/20 = 1.9 nearly doubled. The same was true for the enantioselectivity, which increased from 23% ee for control 20 to 55% ee for anion–π catalyst 21. These results were in support that stabilization of the intrinsically disfavored exo transition state VII on the polarizable

Active-metal template clipping synthesis of novel [2]rotaxanes

• Cătălin C. Anghel,
• Teodor A. Cucuiet,
• Niculina D. Hădade and
• Ion Grosu

Beilstein J. Org. Chem. 2023, 19, 1776–1784, doi:10.3762/bjoc.19.130

• active-metal template strategies [12][13][14][15][16][17][18][19][20][21][22][23]. Other known methods are shrinking [24][25], swelling [26] or hydrogen-bond-mediated transition state stabilization [27][28][29], the latter resembling active-metal template synthesis. Regardless of the method used, the

Benzoimidazolium-derived dimeric and hydride n-dopants for organic electron-transport materials: impact of substitution on structures, electrochemistry, and reactivity

• Swagat K. Mohapatra,
• Khaled Al Kurdi,
• Samik Jhulki,
• Georgii Bogdanov,
• John Bacsa,
• Maxwell Conte,
• Tatiana V. Timofeeva,
• Seth R. Marder and
• Stephen Barlow

Beilstein J. Org. Chem. 2023, 19, 1651–1663, doi:10.3762/bjoc.19.121

• presumably dominant in the present case. The importance of radical stabilization may in part be because the positive charges in Y = H or alkyl 1+ ions is already substantially stabilized by the aromaticity of the benzimidazolium ions, whereas the spin densities of the corresponding 1• radicals are highly

• ring [57]. Presumably inductive effects destabilizing 1i+, different extents of planarization, and improved radical stabilization by the 5-(dimethylamino)-2-thienyl susbtituent play a role. As expected, R' = OMe groups on the six-membered benzimidazolium ring do have a net cation-stabilizing effect

• electrochemical section; however, the observed rate constants for 1bH and 1iH suggest that 5-dimethylamino-2-thienyl affords less net charge stabilization than 4-dimethylaminophenyl. Two reaction pathways have been established for the oxidation of organometallic and organic dimers. A “cleavage-first” mechanism

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• stabilization of the first excited state in relation to the stabilization of the ground state, which is observed in other PDIs when installing the electron-withdrawing nitrile group on the polycyclic aromatic core [27][28]. The molar extinction coefficients (ε) of all compounds in ethyl acetate were determined

Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on “in-out” structure, and theoretical calculations of non-covalent interactions

• Waldemar Iwanek

Beilstein J. Org. Chem. 2023, 19, 1525–1536, doi:10.3762/bjoc.19.109

• formed at δ = 7.16 ppm. This is probably due to the rapid exchange of protons between the hydroxy groups of R[4]A, while leading to even greater stabilization of the upper ring of R[4]A. In contrast, in CDCl3, the chemical shifts of the aromatic protons of the upper rim R[4]A in the complex are varied

Unraveling the role of prenyl side-chain interactions in stabilizing the secondary carbocation in the biosynthesis of variexenol B

• Moe Nakano,
• Rintaro Gemma and
• Hajime Sato

Beilstein J. Org. Chem. 2023, 19, 1503–1510, doi:10.3762/bjoc.19.107

• interacts with the secondary carbocation at C10, reducing the activation energy of the first step by approximately 4.7 kcal/mol. Moreover, due to the stabilization of the secondary carbocation-like intermediate IM2, the reaction proceeds stepwise rather than concertedly [7]. It was found that the final

• the stabilization of the intermediate IM2b is greater in path b, the activation energy suggests that path a is more favorable. Generally, the activation energies for terpene cyclization reactions are often below 10 kcal/mol. However, in the case of complex rearrangement reactions involving secondary

• stabilization of the secondary carbocation by the prenyl side chain of the intermediate, (ii) the four-membered ring formation is completed by the bridging reaction, and (iii) the annulation from the exomethylene group is a barrier-free process. To date, when constructing the computational model, we have

Application of N-heterocyclic carbene–Cu(I) complexes as catalysts in organic synthesis: a review

• Nosheen Beig,
• Varsha Goyal and
• Raj K. Bansal

Beilstein J. Org. Chem. 2023, 19, 1408–1442, doi:10.3762/bjoc.19.102

• the nitrogen atoms adjacent to the carbene center result in kinetic stabilization of the NHC suppressing its dimerization to the corresponding olefin (the Wanzlick equilibrium). On the other hand, thermodynamic stabilization results due to donation of lone pair(s) electrons of the adjacent nitrogen

• the NHCs facilitates this donation and also helps to favor the singlet state by forcing the carbene carbon atom into a bent, more sp2-like arrangement. The thermodynamic stabilization of the NHCs derived from heteroaromatic compounds can be attributed to their partial aromaticity, which was calculated

Organic thermally activated delayed fluorescence material with strained benzoguanidine donor

• Alexander C. Brannan,
• Elvie F. P. Beaumont,
• Nguyen Le Phuoc,
• George F. S. Whitehead,
• Mikko Linnolahti and
• Alexander S. Romanov

Beilstein J. Org. Chem. 2023, 19, 1289–1298, doi:10.3762/bjoc.19.95

• compared with the 4CzIPN corroborates with the electron deficient nature of the benzoguanidine moiety thus making it harder to oxidize compared with the more electron-rich carbazole moiety. This results in stabilization of the HOMO energy level at −6.4 eV for 4BGIPN. Significant stabilization for both HOMO

• the electronic parameters between benchmark 4CzIPN and new 4BGIPN materials revealed that benzoguanidine acts as a weaker donor ligand compared with carbazole, resulting in greater stabilization of the HOMO energy level down to −6.4 eV rather than LUMO. The significant stabilization of both HOMO and

Exploring the role of halogen bonding in iodonium ylides: insights into unexpected reactivity and reaction control

• Carlee A. Montgomery and
• Graham K. Murphy

Beilstein J. Org. Chem. 2023, 19, 1171–1190, doi:10.3762/bjoc.19.86

• -holes are playing an important role in the outcomes of (radio)fluorination reactions. Computational evidence suggests an energetic preference for fluorine adducts with the stronger σ-hole, reminiscent of hard/soft acid and base principles, where better electrostatic stabilization is achieved when the

• these theories are still in their infancy, including whether hard/soft acid and base principles may be relevant to matching σ-hole selectivity (such as in radiofluorination), and whether the ortho-Lewis base effect is merely one of ylide stabilization, or if this also influences σ-hole selectivity and

Synthesis of tetrahydrofuro[3,2-c]pyridines via Pictet–Spengler reaction

• Elena Y. Mendogralo and
• Maxim G. Uchuskin

Beilstein J. Org. Chem. 2023, 19, 991–997, doi:10.3762/bjoc.19.74

• with an insufficient stabilization of the generated iminium cation due to the presence of a strong electron-withdrawing nitro group (for 3n), and due to the fact that the electron deficiency of the pyridine ring is strongly manifested in an acidic media (for 3m). In addition, the disadvantages of the

• developed method include the impossibility of using aliphatic aldehydes (for example, 2-phenylacetaldehyde (2o)), that is also explained by an insufficient stabilization of the resulting cation and the impossibility of cyclization. We also did not detect the formation of the target product when 1H-pyrrole-2

Photoredox catalysis enabling decarboxylative radical cyclization of γ,γ-dimethylallyltryptophan (DMAT) derivatives: formal synthesis of 6,7-secoagroclavine

• Alessio Regni,
• Francesca Bartoccini and
• Giovanni Piersanti

Beilstein J. Org. Chem. 2023, 19, 918–927, doi:10.3762/bjoc.19.70

• ) complex and to close the cycle), thus furnishing compound 6 comprised of an eight-membered ring. The related stabilization effect of the conjugated product 6 might be the thermodynamic driving force for this radical coupling. An alternative route (not showen) would be that, the α-amidoalkyl radical

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• molecules to double stranded DNA or RNA polynucleotides usually affect the double helix stability. This stabilization or destabilization was revealed as a change of the polynucleotide’s melting temperature (ΔTm value) which was the difference of the Tm value of free polynucleotide and the Tm value of

• polynucleotide secondary structure. Concurrently, no monomer fluorescence signal at 400 nm changed, except a small increase upon poly dGdC–poly dGdC addition. Negligible thermal stabilization (Table S1, Figures S6–S8, Supporting Information File 1) did not support the classical intercalation of phenanthridine