Silica gel with covalently attached bambusuril macrocycle for dicyanoaurate sorption from water

• Michaela Šusterová and
• Vladimír Šindelář

Beilstein J. Org. Chem. 2025, 21, 2604–2611, doi:10.3762/bjoc.21.201

• ]. In the field of anion extraction, there is growing interest in solid-phase substrates functionalized with synthetic macrocyclic receptors. These materials employ a supramolecular approach based on specific host–guest interactions between the immobilized macrocycle and the guest in solution, often

• report a new material, SG-NHCO-BU1, in which the BU1 macrocycle is covalently grafted onto the surface of silica gel. We demonstrate that this hybrid material can be used for the selective dicyanoaurate(I) sorption from water. Moreover, it is shown that unlike SG-BnBU, SG-NHCO-BU1 exhibits good stability

• in organic solvents. Results and Discussion Decoration of silica gel with bambusuril For the modification of silica gel (SG), we selected previously reported bambus[6]uril BU1 (Scheme 1) containing 12 carboxyalkyl substituents [13]. This macrocycle was chosen for several reasons: BU1 can be attached

Synthesis and characterization of a isothiouronium-calix[4]arene derivative: self-assembly and anticancer activity

• Giuseppe Granata,
• Loredana Ferreri,
• Claudia Giovanna Leotta,
• Giovanni Mario Pitari and
• Grazia Maria Letizia Consoli

Beilstein J. Org. Chem. 2025, 21, 2535–2541, doi:10.3762/bjoc.21.195

• introduction of four isothiouronium functional groups at the upper rim of a calix[4]arene macrocycle, bearing four dodecyl aliphatic chains at the lower rim, yields an amphiphilic derivative that spontaneously self-assembles into nanoscale structures with a mean hydrodynamic diameter of approximately 100 nm

Effect of a photoswitchable rotaxane on membrane permeabilization across lipid compositions

• Udyogi N. K. Conthagamage,
• Lilia Lopez,
• Zuliah A. Abdulsalam and
• Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2498–2512, doi:10.3762/bjoc.21.192

• Udyogi N. K. Conthagamage Lilia Lopez Zuliah A. Abdulsalam Victor Garcia-Lopez Department of Chemistry, Louisiana State University. Baton Rouge, LA 70803, USA 10.3762/bjoc.21.192 Abstract This study investigated a rotaxane featuring azobenzene photoswitches in its macrocycle and its ability to

• bilayers through the shuttling of the macrocycle carrying the ions or through a relay mechanism [10][11]. In one example, the isomerization of an azobenzene photoswitch incorporated into the axle was used to modulate the shuttling rate of the macrocycle and, consequently, the efficiency of potassium ion

• translocation across membranes [14]. Our group recently developed photoswitchable rotaxane 1, which differs from most reported designs that typically incorporate photoswitchable units into the axle [15]; in our rotaxane 1, the azobenzene photoswitches are incorporated into the macrocycle instead. We

Conformational effects on iodide binding: a comparative study of flexible and rigid carbazole macrocyclic analogs

• Guang-Wei Zhang,
• Yong Zhang,
• Le Shi,
• Chuang Gao,
• Hong-Yu Li and
• Lei Xue

Beilstein J. Org. Chem. 2025, 21, 2369–2375, doi:10.3762/bjoc.21.181

• work represents one of the earliest comparative studies on the anion-binding behaviors of carbazole-based structural analogs, demonstrating that a flexible macrocycle markedly improves iodide binding affinity via an induced-fit mechanism. The flexible analog PBG exhibits a 22.78-fold higher

• groups inside the macrocycle and thus causes the NH peak to be shifted downfield. At the same time, after the addition of TBAI to the PBG solution, both proton signals c/d and e/f were shifted downfield, while protons a/b moved slightly to higher field, confirming the interaction between the anion and

• computational schematic (Figures S16 and S17 in Supporting Information File 1), the anions are positioned within the macrocycle cavity, exhibiting close contacts to hydrogen atoms on the bridging benzene rings, peripheral substituted phenyl groups, and carbazole moieties. These spatial interactions suggest a

Rotaxanes with integrated photoswitches: design principles, functional behavior, and emerging applications

• Jullyane Emi Matsushima,
• Khushbu,
• Zuliah Abdulsalam,
• Udyogi Navodya Kulathilaka Conthagamage and
• Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2345–2366, doi:10.3762/bjoc.21.179

• shuttling dynamics. In this review, we discuss key examples of photoswitchable rotaxanes, organized according to the position of the photoswitch, either embedded in the axle or incorporated into the macrocycle. We examine the major classes of photoswitches used, including their switching mechanisms and the

• increasingly require rethinking and developing new structural designs that incorporate more efficient and advanced photoswitches to fully realize their potential. Keywords: macrocycle; photoisomerization; photoswitches; rotaxanes; shuttling; Introduction Harnessing light energy to control intra- and

• three decades, photoswitches have been successfully integrated into a variety of supramolecular architectures, including mechanically interlocked molecules (MIMs) such as rotaxanes, enabling new dynamic functions [6][7]. Rotaxanes are molecules composed of a macrocycle threaded onto a linear axle, with

Measuring the stereogenic remoteness in non-central chirality: a stereocontrol connectivity index for asymmetric reactions

• Ivan Keng Wee On,
• Yu Kun Choo,
• Sambhav Baid and
• Ye Zhu

Beilstein J. Org. Chem. 2025, 21, 1995–2006, doi:10.3762/bjoc.21.155

• the other hand, if the bond formation/cleavage is within the macrocycle, the stereochemical differentiation atoms are traced to the stereogenic arene. Therefore, the CALB-mediated esterification to cyclophenes [21] is [53], regardless of the length of the linkage (CH2)n (Scheme 5D). In recent years

Synthesis of N-doped chiral macrocycles by regioselective palladium-catalyzed arylation

• Shuhai Qiu and
• Junzhi Liu

Beilstein J. Org. Chem. 2025, 21, 1917–1923, doi:10.3762/bjoc.21.149

• ; inherent chirality; N-doped macrocycle; nonplanarity; regioselective cyclization; Introduction Chiral macrocycles have attracted significant research interest owing to their diverse applications in enantioselective recognition [1][2], catalysis [3][4], and circularly polarized luminescence [5][6

• , these macrocycles show blue to green emissions with high fluorescence quantum yields (ΦF up to 0.69). Owing to the existence of inherent chirality, two enantiomers of N-doped macrocycle MC1 were successfully isolated by chiral resolution, enabling detailed investigation of its chiroptical properties

Chiral phosphoric acid-catalyzed asymmetric synthesis of helically chiral, planarly chiral and inherently chiral molecules

• Wei Liu and
• Xiaoyu Yang

Beilstein J. Org. Chem. 2025, 21, 1864–1889, doi:10.3762/bjoc.21.145

• electrophilic amination reaction of the aniline moiety with azodicarboxylates [37][38], the introduction of a bulky hydrazine group restricted the free flipping of the benzene ring, leading to the formation of planar chiral macrocycle 33 with high enantioselectivity (Scheme 9). Substrate scope studies

Research progress on calixarene/pillararene-based controlled drug release systems

• Liu-Huan Yi,
• Jian Qin,
• Si-Ran Lu,
• Liu-Pan Yang,
• Li-Li Wang and
• Huan Yao

Beilstein J. Org. Chem. 2025, 21, 1757–1785, doi:10.3762/bjoc.21.139

• of controlled-release technologies, with the aim of offering a reference for the utilization of aromatic macrocycles in drug-controlled release applications. Keywords: aromatic macrocycle; controlled-release drug delivery systems; stimulus response; supramolecular chemistry; Introduction Drugs are

• solubility, this can be improved through derivatization. Water-soluble calixarene derivatives can be obtained through functional modifications, including the introduction of sulfonic acid, amine, and carboxylic acid groups [57][58][59]. These water soluble macrocycle derivatives can be used to increase the

• dual modifications [69]. These derivatives have emerged as a research hotspot due to their unique combination of water solubility, biocompatibility, and host–guest encapsulation capability [47][52][70]. The aggregation behavior of amphiphilic CAs is closely related to the size of the macrocycle, the

3,3'-Linked BINOL macrocycles: optimized synthesis of crown ethers featuring one or two BINOL units

• Somayyeh Kheirjou,
• Jan Riebe,
• Maike Thiele,
• Christoph Wölper and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2025, 21, 1719–1729, doi:10.3762/bjoc.21.134

• incorporation into larger frameworks, such as interlocked molecules [25][35]. In most BINOL-based crown ethers, the macrocycle is attached to the BINOL unit via the oxygens in the 2,2'-positions. This structural motif has been used to construct crown ethers featuring either one or two BINOL units (see Figure 1a

• ) [41][42][43] have been used for attaching the crown ether macrocycle, although this strategy has the advantage that the 2,2'-hydroxy groups remain intact and can be used for further binding or functionalization. Our group recently became interested in synthesizing BINOL derivatives featuring

• on the macrocycle formation. In comparison to the Me-derivative Me-2, both the unsubstituted diol H-2 and the isopropyl derivative iPr-2 gave generally lower yields for the smaller macrocycles (11/30/32% for H-M15/6/7, 20/41/46% for iPr-M15/6/7), while the yields for the largest macrocycles H/iPr-M18

On the aromaticity and photophysics of 1-arylbenzo[a]imidazo[5,1,2-cd]indolizines as bicolor fluorescent molecules for barium tagging in the study of double-beta decay of ¹³⁶Xe

• Eric Iván Velazco-Cabral,
• Fernando Auria-Luna,
• Juan Molina-Canteras,
• Miguel A. Vázquez,
• Iván Rivilla and
• Fernando P. Cossío

Beilstein J. Org. Chem. 2025, 21, 1627–1638, doi:10.3762/bjoc.21.126

• values. Our calculations show that, as expected, 12-crown-4 16a and 15-crown-5 16b are too small and consequently the barium cation lies outside the average molecular plane determined by the macrocycle. In the case of 18-crown-6 16c, the cyclic ligand accommodates very well the cation, which is now

• central position within the concave face. Also in this case, one oxygen atom of the oversized macrocycle does not interact directly with Ba2+, thus resulting in a non-optimal coordination pattern. Therefore, the shape of the ligand and the low positive charge available for the cation result in the largest

Synthesis of an aza[5]helicene-incorporated macrocyclic heteroarene via oxidation of an o-phenylene-pyrrole-thiophene icosamer

• Yusuke Matsuo,
• Aoi Nakagawa,
• Shu Seki and
• Takayuki Tanaka

Beilstein J. Org. Chem. 2025, 21, 1561–1567, doi:10.3762/bjoc.21.119

• largest cyclic array in the series. The oxidative fusion reaction with [bis(trifluoroacetoxy)iodo]benzene (PIFA) afforded a cyclophane-type aza[5]helicene-incorporated macrocycle, the structure of which was unambiguously revealed by X-ray diffraction analysis. Its optical properties have been investigated

• largest macrocycle ever synthesized is a dodecameric hybrid array of 1,2-phenylene, 2,5-thienylene, and 2,5-pyrrolylene units [22][23]. The intramolecular oxidative coupling of these arrays afforded heterohelicene-incorporated macrocycles D and E, depending on the relative arrangements of the pyrrole and

• an aza[5]helicene-incorporated macrocycle. The resulting cyclophane-like structure and its optical properties have been analyzed in detail. Results and Discussion Synthesis and characterization Synthesis We obtained o-phenylene-pyrrole-thiophene hybrid icosamer 4 during our attempt to synthesize

Wittig reaction of cyclobisbiphenylenecarbonyl

• Taito Moribe,
• Junichiro Hirano,
• Hideaki Takano,
• Hiroshi Shinokubo and
• Norihito Fukui

Beilstein J. Org. Chem. 2025, 21, 1454–1461, doi:10.3762/bjoc.21.107

• Cyclobisbiphenylenecarbonyl (CBBC) represents a readily available chiral figure-eight macrocycle containing two carbonyl groups. However, the transformation of the carbonyl groups has been unexplored. Herein, we conducted the Wittig reaction of CBBC with methylenetriphenylphosphorane to furnish two chiral macrocycles

• . Consequently, figure-eight molecules often exhibit fascinating properties, such as unusual rearrangement reactions [9] and efficient circularly polarized luminescence (CPL) [10][11][12]. Cyclobisbiphenylenecarbonyl (CBBC) 1 is a figure-eight macrocycle, which is readily synthesized from commercially available

Supramolecular assembly of hypervalent iodine macrocycles and alkali metals

• Krishna Pandey,
• Lucas X. Orton,
• Grayson Venus,
• Waseem A. Hussain,
• Toby Woods,
• Lichang Wang and
• Kyle N. Plunkett

Beilstein J. Org. Chem. 2025, 21, 1095–1103, doi:10.3762/bjoc.21.87

• are presented. Keywords: hypervalent iodine; macrocycle; metal coordination; supramolecular; Introduction Supramolecular chemistry is emerging as a pivotal area of research in both medicinal and materials chemistry that opens the avenue for new functionalized materials for their use in medical

• system [12]. In addition to these covalent bonding interactions, additional secondary bonding (e.g., red-dotted bonds between iodine and oxygen in phenylalanine-based hypervalent iodine macrocycle in benzene system in Figure 1A) can arise in these systems from neighboring atom lone pairs. Secondary

• previously isolated in crystalline form in two different molecular conformations [18]. In conformer I (Figure 2, bottom), all three benzyl groups are oriented towards the interior of the macrocycle. In contrast, conformer II (Figure 2, top) features two benzyl groups projecting inward and one benzyl group

Recent advances in controllable/divergent synthesis

• Jilei Cao,
• Leiyang Bai and
• Xuefeng Jiang

Beilstein J. Org. Chem. 2025, 21, 890–914, doi:10.3762/bjoc.21.73

• generated the [1 + 1] macrocycle 39 as the sole product. In contrast, polar aprotic solvents such as dimethyl sulfoxide (DMSO), N,N-dimethylformamide (DMF), or acetonitrile (MeCN) favored precipitation of the [2 + 2] macrocycle 40. Notably, the macrocycle 40 underwent spontaneous structural reorganization

• in chloroform or dichloromethane (DCM), converting entirely into the thermodynamically stable [1 + 1] isomer 39. This work demonstrates a solvent-driven approach for dynamically interconverting macrocycle sizes, governed by thermodynamic stability and solubility differences. In the same year, Chauhan

• N,N-disubstituted acrylamides [30]. Catalyst-tuned regio- and enantioselective C(sp3)–C(sp3) coupling [31]. Catalyst-controlled annulations of bicyclo[1.1.0]butanes with vinyl azides [32]. Solvent-driven reversible macrocycle-to-macrocycle interconversion [39]. Unexpected solvent-dependent

Dicarboxylate recognition based on ultracycle hosts through cooperative hydrogen bonding and anion–π interactions

• Wen-Hui Mi,
• Teng-Yu Huang,
• Xu-Dong Wang,
• Yu-Fei Ao,
• Qi-Qiang Wang and
• De-Xian Wang

Beilstein J. Org. Chem. 2025, 21, 884–889, doi:10.3762/bjoc.21.72

• , synthetic ultracycles remain relatively unexplored due to the significant synthetic challenges [9][10][11][12][13][14][15][16][17][18][19]. Among these, very large macrocycles constructed from smaller macrocyclic building units are particularly underexplored. Such macrocycle-containing ultracycles are

• hydroxy groups and engaging in anion–π interactions (2.70–2.92 Å) with the triazine rings (Figure 3). Additionally, the glycol arms of the macrocycle may further stabilize the anion binding through van der Waals interactions with the alkyl chains of the dianions. Driven by these multiple noncovalent

Origami with small molecules: exploiting the C–F bond as a conformational tool

• Patrick Ryan,
• Ramsha Iftikhar and
• Luke Hunter

Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54

• atoms on the inside of the macrocycle, and so it is only slightly preferred over multiple other possible conformations. Fluorine has the ability to stabilise the square conformation. The key consideration is that 1,1-difluoroalkanes have a wide C–C(F2)–C angle, as previously discussed; this wide angle

• is favourably accommodated at the corner positions of the square shape (e.g., 36, Figure 5) because it alleviates the transannular hydrogen clashes [72]. This effect proves to be quite general: it can be harnessed to force the cyclododecane macrocycle into different shapes by positioning two CF2

• groups in different relative locations around the macrocycle (e.g., 37, Figure 5), and it can be applied to larger macrocycles too [73]. Most strikingly, this effect has been exploited to modulate the aromas of fragrance compounds (e.g., compounds 38 and 39, Figure 5) by fine-tuning the shape of the

Cryptophycin unit B analogues

• Thomas Schachtsiek,
• Jona Voss,
• Maren Hamsen,
• Beate Neumann,
• Hans-Georg Stammler and
• Norbert Sewald

Beilstein J. Org. Chem. 2025, 21, 526–532, doi:10.3762/bjoc.21.40

• ] to obtain free acid 11. Exchange of the Boc protecting group of dimethylaniline 8 to an acryloyl substituent and subsequent saponification furnished dimethylamine building block 13. For the macrocycle assembly, especially the ring closure, we decided on two different routes. While the cryptophycin

Beyond symmetric self-assembly and effective molarity: unlocking functional enzyme mimics with robust organic cages

• Keith G. Andrews

Beilstein J. Org. Chem. 2025, 21, 421–443, doi:10.3762/bjoc.21.30

• popularization of dynamic covalent chemistry in the 1990s [251][252][253][254][255], macrocycle and cage synthesis using reversible reactions [256][257][258][259] like imine formation (Figure 7A) have led to advances in the synthesis of COFs [223][224] and discrete organic cages [260][261][262][263][264][265

• selective substrate and transition-state binding, and for which extensive synthetic development is known [350][351][352][353][354][355]; (iii) they are the lowest possible symmetry polymacrocyclic structure (removing one edge piece will result in a macrocycle) [356][357], meaning ordered asymmetric

• free energy transition barrier can be framed in terms of contributions from polarization and organization by the catalyst/system. Typical catalysis modes using macrocycle cavities performing (non-specific) hydrophobic substrate binding. (A) Macrocycles that confine two reagents close together to alter

Hydrogen-bonded macrocycle-mediated dimerization for orthogonal supramolecular polymerization

• Wentao Yu,
• Zhiyao Yang,
• Chengkan Yu,
• Xiaowei Li and
• Lihua Yuan

Beilstein J. Org. Chem. 2025, 21, 179–188, doi:10.3762/bjoc.21.10

• covalently linked polymers. So far, the design of such monomers has relied heavily on three-dimensional macrocycles, and the use of two-dimensional shape-persistent macrocycles for this purpose remains rather rare. Here, we demonstrate a dimerization motif based on a hydrogen-bonded macrocycle that can be

• effectively applied to form orthogonal supramolecular polymers. The macrocycle-mediated connectivity was confirmed by single-crystal X-ray diffraction, which revealed a unique 2:2 binding motif between host and guest, bridged by two cationic pyridinium end groups through π-stacking interactions and other

• cooperative intermolecular forces. Zinc ion-induced coordination with the macrocycle and a terpyridinium derivative enabled orthogonal polymerization, as revealed by 1H NMR, DLS, and TEM techniques. In addition, viscosity measurements showed a transition from oligomers to polymers at the critical

Advances in the use of metal-free tetrapyrrolic macrocycles as catalysts

• Mandeep K. Chahal

Beilstein J. Org. Chem. 2024, 20, 3085–3112, doi:10.3762/bjoc.20.257

• free-base) macrocycles have not been explored as much in terms of catalysis, even though they are starting compounds for the preparation of their metallated analogues that are commonly used as catalysts. In contrast with a calix[4]pyrrole macrocycle with four NHs (from four pyrrole units), a metal-free

• porphyrin macrocycle contains two Ns and two NHs (from two pyrrolenine and two pyrrole units), both of which can act as supramolecular H-bond donor and acceptors and can promote metal-free catalysis. Additionally, due to their synthetic versatility, these macrocycles can be further functionalized to add

• , with TBAI as a co-catalyst, up to 74% yields (Table 1). The inactivity of porphyrin 18 was attributed to the inaccessibility of the inner core imine due to its planar structure. The mechanism of the epoxide ring-opening reaction was elucidated by DFT calculations, which suggested that the macrocycle

Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond

• Thomas Ma and
• John Chu

Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253

• to fully understand the determinant(s) of NRP topology. There are many ways to classify NRPs when topology and chemical structural features are considered simultaneously. For example, a macrocycle may be a lactam or a lactone depending on whether the internal nucleophile is an amine or an alcohol

Investigation of a bimetallic terbium(III)/copper(II) chemosensor for the detection of aqueous hydrogen sulfide

• Parvathy Mini,
• Michael R. Grace,
• Genevieve H. Dennison and
• Kellie L. Tuck

Beilstein J. Org. Chem. 2024, 20, 2818–2826, doi:10.3762/bjoc.20.237

• aqueous hydrogen sulfide and 100 ppb for gaseous hydrogen sulfide [16]. However, due to the limited aqueous solubility and ligand dissociation of this chemosensor, and to the weakly luminescent bis species at usable concentrations, we extended this work to the lanthanide–macrocycle binary complexes [Ln

C–C Coupling in sterically demanding porphyrin environments

• Liam Cribbin,
• Brendan Twamley,
• Nicolae Buga,
• John E. O’ Brien,
• Raphael Bühler,
• Roland A. Fischer and
• Mathias O. Senge

Beilstein J. Org. Chem. 2024, 20, 2784–2798, doi:10.3762/bjoc.20.234

• the porphyrin ring deforming from the mean porphyrin plane either by steric repulsion in the core of the macrocycle or by bulky substituents at the porphyrin periphery [3]. This affords four principle distortion modes, saddle, dome, ruffle or wave [8], which can be quantified by the normal-coordinate

• metalation effect prevents inner core N–H tautomerism [64] and thus increases the structural symmetry of the macrocycle [65][66], leading to more facile atropisomeric separation. However, in the case of compound 11 the atropisomers could not be separated due to low rotational barriers and similar polarities

HFIP as a versatile solvent in resorcin[n]arene synthesis

• Hormoz Khosravi,
• Valeria Stevens and
• Raúl Hernández Sánchez

Beilstein J. Org. Chem. 2024, 20, 2469–2475, doi:10.3762/bjoc.20.211

• from intermolecular dehydration, nowadays known as alkyl resorcin[4]arene. Forty years later in 1980, Höegberg noticed that short alkyl chain resorcin[n]arenes develop stereoisomers in the reaction mixture; however, since the condensation reaction is reversible, once the macrocycle adopts the bowl