Synthesis of a [6]rotaxane with singly threaded γ-cyclodextrins as a single stereoisomer

• Jason Yin Hei Man and
• Ho Yu Au-Yeung

Beilstein J. Org. Chem. 2019, 15, 1829–1837, doi:10.3762/bjoc.15.177

• elucidating the origin of the stereoselectivity in the synthesis of 6R. The 1H spectrum of 4R is generally similar to that of 6R and strong NOE cross peaks between the triazole and CB[6], and also Ha of the anthracene and CB[6] protons were observed (Figure S10 in Supporting Information File 1), confirming

Steroid diversification by multicomponent reactions

• Leslie Reguera,
• Cecilia I. Attorresi,
• Javier A. Ramírez and
• Daniel G. Rivera

Beilstein J. Org. Chem. 2019, 15, 1236–1256, doi:10.3762/bjoc.15.121

• . Structures of natural steroids of A) animal and B) plant origin. Ugi-4CR-derived library of androstanic azasteroids with diverse substitution patterns at the phenyl ring (amine component) [23]. Synthesis of a steroidal β-lactam by Ugi reaction of a cholanic aldehyde [14]. Synthetic route to steroidal 2,5

Phylogenomic analyses and distribution of terpene synthases among Streptomyces

• Lara Martín-Sánchez,
• Kumar Saurabh Singh,
• Mariana Avalos,
• Gilles P. van Wezel,
• Jeroen S. Dickschat and
• Paolina Garbeva

Beilstein J. Org. Chem. 2019, 15, 1181–1193, doi:10.3762/bjoc.15.115

• structure was the first of a diterpene cyclase of bacterial origin reported [41]. Isoafricanol synthases were first noticed in S. violaceusniger and S. rapamycinicus based on the presence of 8 in culture headspace extracts as a major sesquiterpene [34][42], followed by the biochemical characterisation of

Unexpected polymorphism during a catalyzed mechanochemical Knoevenagel condensation

• Sebastian Haferkamp,
• Andrea Paul,
• Adam A. L. Michalchuk and
• Franziska Emmerling

Beilstein J. Org. Chem. 2019, 15, 1141–1148, doi:10.3762/bjoc.15.110

• nature of catalyst incorporation, and hence the origin of color. The reactions containing between 40 µL and 5 µL catalyst show conversion of the substrates directly into the mechanically stable triclinic product phase, according to real-time in situ XRPD analysis (Supporting Information File 1, Figure S1

Multicomponent reactions (MCRs): a useful access to the synthesis of benzo-fused γ-lactams

• Edorta Martínez de Marigorta,
• Jesús M. de Los Santos,
• Ana M. Ochoa de Retana,
• Javier Vicario and
• Francisco Palacios

Beilstein J. Org. Chem. 2019, 15, 1065–1085, doi:10.3762/bjoc.15.104

• -oxindoles; Introduction Pyrrolidin-2-ones (I, Figure 1) are heterocycles that contain a γ-lactam ring that can be found in many biologically active compounds with natural or synthetic origin [1]. When an aryl group is fused to the 3- and 4-positions of the five-membered heterocycle, isoindolinones (II

Novel (2-amino-4-arylimidazolyl)propanoic acids and pyrrolo[1,2-c]imidazoles via the domino reactions of 2-amino-4-arylimidazoles with carbonyl and methylene active compounds

• Victoria V. Lipson,
• Tetiana L. Pavlovska,
• Nataliya V. Svetlichnaya,
• Anna A. Poryvai,
• Nikolay Yu. Gorobets,
• Erik V. Van der Eycken,
• Irina S. Konovalova,
• Svetlana V. Shiskina,
• Alexander V. Borisov,
• Vladimir I. Musatov and
• Alexander V. Mazepa

Beilstein J. Org. Chem. 2019, 15, 1032–1045, doi:10.3762/bjoc.15.101

• compounds of both natural and synthetic origin, containing in their structure pyrrole and imidazole rings, display a wide set of pharmacologically significant activities. The most important natural sources of such systems are marine sponges. Since the 70's of 20th century up to date more than 150

Mechanistic investigations on multiproduct β-himachalene synthase from Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 1008–1019, doi:10.3762/bjoc.15.99

• , Supporting Information File 1). To shed light on the stereochemical course of the 1,3-hydride shift connecting cations D and F, a series of labelling experiments were conducted to determine the origin of the shifting hydrogen (C-1) and its destination (C-10) for 1 (Figure 8). A comparison of the 13C NMR

• ) indicating stereospecific loss of one hydrogen atom. 13C-Labellings are indicated by red dots. Total ion chromatogram of hexane extracts from HcS incubations with A) (R)-NPP, B) (S)-NPP and C) (rac)-NPP. The origin of the two diastereotopic methyl groups in 1. Partial 13C NMR spectrum of A) unlabelled 1, B

Stereochemical investigations on the biosynthesis of achiral (Z)-γ-bisabolene in Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 789–794, doi:10.3762/bjoc.15.75

• origin in FPP. Supporting Information Experimental details of culture conditions, gene cloning, protein purification, incubation experiments, isolation of 5 and HPLC purifications, the amino acid sequence of BbS, a phylogenetic tree with the location of BbS, SDS-PAGE analysis, listed NMR data of 5

New sesquiterpenoids from the South China Sea soft corals Clavularia viridis and Lemnalia flava

• Qihao Wu,
• Yuan Gao,
• Meng-Meng Zhang,
• Li Sheng,
• Jia Li,
• Xu-Wen Li,
• Hong Wang and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2019, 15, 695–702, doi:10.3762/bjoc.15.64

• it was isolated”. Further chemical investigation of these soft corals in the South China Sea as well as their associated microorganisms should be conducted to verify the true origin of these metabolites and to further understand the real biological/ecological roles they played in the life cycle of

Design, synthesis and spectroscopic properties of crown ether-capped dibenzotetraaza[14]annulenes

• Krzysztof M. Zwoliński and
• Julita Eilmes

Beilstein J. Org. Chem. 2019, 15, 617–622, doi:10.3762/bjoc.15.57

• shifted downfield for the receptor 3b as compared with the parent 1,7-diaza-15-crown-5 and the receptor 3a. Although exact origin of such a difference needs to be further evaluated, it seems reasonable that the contraction of the bridging chains induces conformational changes that trigger constraints into

• partially overlapped with proton resonances of aliphatic bridges. Receptor 3b displays the properties of chemical shift reagents, similar to the previously reported crown ether-capped porphyrin [36] but of different origin. Since, the macrocyclic dibenzotetraaza[14]annulene core is antiaromatic, and shows

Selective benzylic C–H monooxygenation mediated by iodine oxides

• Kelsey B. LaMartina,
• Haley K. Kuck,
• Linda S. Oglesbee,
• Asma Al-Odaini and
• Nicholas C. Boaz

Beilstein J. Org. Chem. 2019, 15, 602–609, doi:10.3762/bjoc.15.55

• are trapped by molecular iodine which is produced under catalytic conditions via the reduction of iodate. While iodine is produced under experimental conditions via the reduction of iodate, it is not entirely clear what the origin of all the electrons for this process is given that the benzylic

Conformational signature of Ishikawa´s reagent using NMR information from diastereotopic fluorines

• Laize A. F. Andrade,
• Lucas A. Zeoly,
• Rodrigo A. Cormanich and
• Matheus P. Freitas

Beilstein J. Org. Chem. 2019, 15, 506–512, doi:10.3762/bjoc.15.44

• manifests in six-membered rings when 1JC–Hax < 1JC–Heq [8][9]. A similar effect on 1JC–F has been observed on fluorinated six-membered rings and then called the (reverse) fluorine Perlin-like effect [10]. Despite some controversies on the origin of such effects [11][12][13][14], the anomeric-like

• polarization, on the basis of the so-called interacting quantum atoms (IQA) method, has been claimed as the origin of the gauche effect [24]. These effects have strongly influenced mechanisms of hydrogen exchange and the spectroscopic behavior of a variety of systems [25]; the respective fluorine scenario

Adhesion, forces and the stability of interfaces

• Robin Guttmann,
• Johannes Hoja,
• Christoph Lechner,
• Reinhard J. Maurer and
• Alexander F. Sax

Beilstein J. Org. Chem. 2019, 15, 106–129, doi:10.3762/bjoc.15.12

• even known. Instead, attraction is attributed to π–π interactions or CH–π interactions of unclear physical origin. That deformation of molecules induces static multipoles is also not well known; the bending of non-polar planar molecules that have a quadrupole as their lowest static multipole (e.g

• attributed the additivity to the “near-sightedness” of WMIs, and defined the contact zone of two interacting molecules as the set of all atom pairs making non-negligible contributions to the adhesion energy and adhesive forces. We showed that the contact zone is a useful means for discussing the origin of

• cooperative effect agrees well with the approximate isotropy of dispersion interactions. In this paper, we discuss the implications of WMIs on structure and stability of different systems we studied in the past. We discuss the physical origin of WMIs, that is, their composition of different basic interaction

Synthesis, biophysical properties, and RNase H activity of 6’-difluoro[4.3.0]bicyclo-DNA

• Sibylle Frei,
• Adam K. Katolik and
• Christian J. Leumann

Beilstein J. Org. Chem. 2019, 15, 79–88, doi:10.3762/bjoc.15.9

• into the bicyclic derivative 6 could be ruled out (Table 1, entry 3). Consequently, the bicyclic derivative 6 was thought to have its origin in the NIS-mediated nucleosidation step. In analyzing the crude reaction product in more detail, apart from the iodinated nucleosides 2α/β, the presence of an

Organometallic vs organic photoredox catalysts for photocuring reactions in the visible region

• Aude-Héloise Bonardi,
• Frédéric Dumur,
• Guillaume Noirbent,
• Jacques Lalevée and
• Didier Gigmes

Beilstein J. Org. Chem. 2018, 14, 3025–3046, doi:10.3762/bjoc.14.282

• of the ligand is essential for good properties. 2.1.3 The latest generation of metal-based catalysts: Emergence of the TADF complexes: Metal complexes are still at the origin of numerous researches as photoredox catalysts, these researches being notably motivated by their remarkable long-lived

A tutorial review of stereoretentive olefin metathesis based on ruthenium dithiolate catalysts

• Daniel S. Müller,
• Olivier Baslé and
• Marc Mauduit

Beilstein J. Org. Chem. 2018, 14, 2999–3010, doi:10.3762/bjoc.14.279

• ]. A comprehensive computational study by Liu and Houk further validated this model, however, invoking distortion of the NHC ligand towards the dithiolate ligand as origin of the open pocket [13]. The proposed model assumes a side-bound mechanism, which results in a metallacycle perpendicular to the

The activity of indenylidene derivatives in olefin metathesis catalysts

• Maria Voccia,
• Steven P. Nolan,
• Luigi Cavallo and
• Albert Poater

Beilstein J. Org. Chem. 2018, 14, 2956–2963, doi:10.3762/bjoc.14.275

• than 1 kcal/mol by Poater and co-workers [68]. The percent buried volume calculations were performed with the SambVca package developed by Cavallo et al. [42]. The radius of the sphere around the origin placed 2 Å below the metal centre was set to 3.5 Å, while for the atoms, we adopted the Bondi radii

• 5, with a radius 3.5 Å. %VBur is the percent of buried volume. The Ru atom is at the origin and the Ru–CNHC bond is aligned with the z-axis, and the Ru–Cylidene with the x-axis. The isocontour curves of the steric maps are given in Å. Intermediate II for catalysts a) 1 and b) 5 (important bond

Pathoblockers or antivirulence drugs as a new option for the treatment of bacterial infections

• Matthew B. Calvert,
• Varsha R. Jumde and
• Alexander Titz

Beilstein J. Org. Chem. 2018, 14, 2607–2617, doi:10.3762/bjoc.14.239

• pathways, was studied in a clinical trial (Figure 6) [74]. The macrolide antibiotic of natural origin, which does not resemble the structures of signal molecules, was shown to reduce the presence of quorum sensing molecules in vitro and in vivo. It prevented the selection of QS-mutants (lasR) that rapidly

Some mechanistic aspects regarding the Suzuki–Miyaura reaction between selected ortho-substituted phenylboronic acids and 3,4,5-tribromo-2,6-dimethylpyridine

• Piotr Pomarański,
• Piotr Roszkowski,
• Jan K. Maurin,
• Armand Budzianowski and
• Zbigniew Czarnocki

Beilstein J. Org. Chem. 2018, 14, 2384–2393, doi:10.3762/bjoc.14.214

• beneficial chelation effect was observed by Buchwald [28][29]. The origin of the enantioselectivity during the selectivity-determining step of the coupling of tolylboronic acid with naphthylphosphonate bromide was proposed by additional O-chelation. Previously, we also observed additional N-chelation during

Bioinspired cobalt cubanes with tunable redox potentials for photocatalytic water oxidation and CO₂ reduction

• Zhishan Luo,
• Yidong Hou,
• Jinshui Zhang,
• Sibo Wang and
• Xinchen Wang

Beilstein J. Org. Chem. 2018, 14, 2331–2339, doi:10.3762/bjoc.14.208

• charge-transfer transitions from μ-O atoms to the Co centers, which leads to a modest bathochromic shift from 355 (R = H) to 365 nm, however, with a remarkably enhanced intensity. In addition, the highest energy band between 220–260 nm is believed to be of ligand origin, most probably originating from

Synthesis and characterization of π–extended “earring” subporphyrins

• Haiyan Guan,
• Mingbo Zhou,
• Bangshao Yin,
• Ling Xu and
• Jianxin Song

Beilstein J. Org. Chem. 2018, 14, 1956–1960, doi:10.3762/bjoc.14.170

• . Furthermore, we speculate that this strain should be the origin of the much lower yield of 3 comparing to the corresponding “earring” porphyrins. Concerning the diameter of the cavity and the strain of the skeleton, we assumed that some metal ions may insert into the hole surrounded by the tripyrrin moiety

DFT calculations on the mechanism of copper-catalysed tandem arylation–cyclisation reactions of alkynes and diaryliodonium salts

• Tamás Károly Stenczel,
• Ádám Sinai,
• Zoltán Novák and
• András Stirling

Beilstein J. Org. Chem. 2018, 14, 1743–1749, doi:10.3762/bjoc.14.148

• the basis of the mechanism the origin of the stereoselectivity is ascribed to the interaction of the Cu ion with the oxazoline oxygen driving the ring-closure step selectively. Keywords: catalysis; DFT calculation; iodonium salts; reaction mechanism; tandem arylation–cyclisation; Introduction

β-Hydroxy sulfides and their syntheses

• Mokgethwa B. Marakalala,
• Edwin M. Mmutlane and
• Henok H. Kinfe

Beilstein J. Org. Chem. 2018, 14, 1668–1692, doi:10.3762/bjoc.14.143

• ) origin as potential therapeutic agents is also well documented. For instance, Luly et al. synthesized β-hydroxy sulfides coupled to leucine-valine (Leu-Val) replacements as inhibitors of human renin in order to lower blood pressure [100][101]. The high activity of these compounds is attributed to the

The phenyl vinyl ether–methanol complex: a model system for quantum chemistry benchmarking

• Dominic Bernhard,
• Fabian Dietrich,
• Mariyam Fatima,
• Cristóbal Pérez,
• Hannes C. Gottschalk,
• Axel Wuttke,
• Ricardo A. Mata,
• Martin A. Suhm,
• Melanie Schnell and
• Markus Gerhards

Beilstein J. Org. Chem. 2018, 14, 1642–1654, doi:10.3762/bjoc.14.140

• ). Nevertheless, due to the predicted red-shifts of the OH stretching frequencies of the OH–P isomers (indicating an increased hydrogen bond strength compared to the S0 state), their presence, i.e., by a rearrangement reaction from the OH–O’ isomer, can be excluded. By exciting the electronic origin of the OH–O

Anomeric modification of carbohydrates using the Mitsunobu reaction

• Julia Hain,
• Patrick Rollin,
• Werner Klaffke and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2018, 14, 1619–1636, doi:10.3762/bjoc.14.138

• reaction without concomitant modification of the primary 6-OH (vide infra). Apparently, fine-tuning of reaction conditions can alter the selectivity of the Mitsunobu reaction and in addition, different regioselectivities might origin in the structure of the sugar substrate. In the course of a synthesis of