Monitoring carbohydrate 3D structure quality with the Privateer database

• Jordan S. Dialpuri,
• Haroldas Bagdonas,
• Lucy C. Schofield,
• Phuong Thao Pham,
• Lou Holland and
• Jon Agirre

Beilstein J. Org. Chem. 2024, 20, 931–939, doi:10.3762/bjoc.20.83

Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• be beneficial to the yield. Finally, by monitoring the reaction time, it was discovered that reducing the reaction time to 1 h further improved the yield to 62%. Finally, using the optimized conditions (Table 1, entry13), the scope was carried out and afforded the desired products 5a–t (Scheme 5

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• ]. The discovery of the nnlA gene resulted from screening a JS1663 genomic library by monitoring for E. coli transformants that produced nitrite (NO2−) in the presence of NNG. Analysis of the mass balance via in vitro experiments showed that NnlA degraded NNG into NO2−, ammonium (NH4+), and glyoxylate

• degradation was unrelated to E. coli being unable to uptake 2-NAE, in vitro experiments with purified, reduced Vs NnlA incubated with 2 mM 2-NAE at pH 7.5 were performed. The LC–MS EICs monitoring 2-NAE (m/z 105.03 ± 100 ppm) show the prominent peak characteristic for 2-NAE. The intensity of this peak does

• (160 μM), Ms (38 μM), and Ps (28 μM). Representative LC–MS EICs monitoring molecular anions of NNG (m/z 119.01 ± 100 ppm) and glyoxylate (m/z 72.99 ± 100 ppm) in samples containing 350 μM NNG, 10 μM dithionite, and 5 μM of indicated NnlA homolog. Samples were incubated for approximately one hour at 21

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• dependence (higher temperature results in higher rates). In 1966, Brown and co-worker reported a specialized apparatus enabling the monitoring and control of HCl gas consumption during the reaction [40]. They observed full conversion of α-methylstyrene (11) within minutes and suggested that the

New variochelins from soil-isolated Variovorax sp. H002

• Jabal Rahmat Haedar,
• Aya Yoshimura and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2024, 20, 692–700, doi:10.3762/bjoc.20.63

• chromatography, with methanol as the mobile phase. After monitoring the fractions by a CAS assay, the positive fractions were concentrated and purified by semi-preparative HPLC on a Cosmosil 5C18-MS-II column (10 mm ID × 250 mm, Nacalai Tesque), using a gradient system with MeCN/H2O (3:7 to 7:3) as the mobile

Enhanced reactivity of Li⁺@C₆₀ toward thermal [2 + 2] cycloaddition by encapsulated Li⁺ Lewis acid

• Hiroshi Ueno,
• Yu Yamazaki,
• Hiroshi Okada,
• Fuminori Misaizu,
• Ken Kokubo and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2024, 20, 653–660, doi:10.3762/bjoc.20.58

• reactant 4, which has a larger energy gap between its HOMO and LUMO of Li+@C60 (1.92 eV). All reactions were conducted in the dark to avoid photoinduced SET reactions (Scheme 2). First, the reactivity was assessed by monitoring the reaction progress using a previously developed electrolyte-added HPLC

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• that enables monitoring by circular dichroism. Upon the addition of Ca(II), a large increase in the binding affinity for halide ions was observed due to the folding of the receptor in a helicoidal form that enabled cooperative interaction with both urea moieties. More flexible coordination responsive

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• stability. Conversely, selenepine 28c and selenepine Se-oxide 29c were quantitatively converted into the seco-HBC 31 by thermal activation at 200 °C for 5 min, as evidenced by UV–visible absorption and HPLC monitoring. SO-extrusion from thiepine S-oxide 29b was also successfully triggered in the solid state

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• 1:1 (Scheme 2). Complex 9 is insoluble in most organic solvents, but it turned out to be unstable in DMSO-d6 solution, as evidenced by monitoring its 1Н NMR spectra (Supporting Information File 1, Figure S1). Figure S1a shows the spectrum of the starting quinoline 5, Figure S1b represents complex 9

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• design allows easy monitoring the reaction course and correct estimation of time required for the reaction to complete. The use of excess of a sialyl donor is quite a common practice; in such cases, higher yields of glycosylation products are usually obtained in line with general consensus that the

• dried at 80 °C in vacuo (0.1 Torr, 1 h)) was added. The mixture was stirred at room temperature (≈20 °C) until complete consumption of the starting material (TLC monitoring, Rf = 0.10 (7), Rf = 0.57 (2), benzene/EtOAc 9:1). The reaction mixture was concentrated under reduced pressure, the residue was

• complete consumption of the starting material (TLC monitoring, Rf = 0.10 (5), Rf = 0.49 (6), EtOAc/petroleum ether 35:65). Saturated aqueous NaHCO3 (5 mL) was added, and the mixture was well shaken and then allowed to warm to ≈20 °C, diluted with CH2Cl2 (50 mL), washed with water (100 mL), 1 M aqueous

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• was not formed, but the formation of aldehyde 3 could be observed during TLC monitoring. Furthermore, engaging previous dihydronaphthalene 4 in a Friedel–Crafts reaction with 5 in the presence of BF3·OEt2 and MgSO4 did not afford product 6. These observations are in agreement with a mechanism

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• bathochromic shifts of Δλ = 47–57 nm (Figure 3, Supporting Information File 1, Table S1), which indicated the formation of the benzo[c]quinolizinium ions 3c–g as photocyclization products [20]. The absence of isosbestic points during the photometric monitoring of the photoreactions indicated a stepwise

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• study was performed by monitoring the appearance of the zwitterion absorption by means of UV–vis spectroscopy in chloroform or in methanol as the solvent. The concentration of the respective Michael acceptor was varied ([Michael acceptor] = 2.5 mmol/L to 10 mmol/L) and was at least ten-fold higher than

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• µL of 4.0 µM AvaA7 (final concentration: 0.2 µM) and 5.0 µM of different concentrations of NADPH or NADH (final concentration: 25–800 µM) were added to the reaction mixture (final reaction volume: 100 µL). The initial velocity of the reaction catalyzed by AvaA7 was estimated by monitoring the

Controlling the reactivity of La@C₈₂ by reduction: reaction of the La@C₈₂ anion with alkyl halide with high regioselectivity

• Yutaka Maeda,
• Saeka Akita,
• Mitsuaki Suzuki,
• Michio Yamada,
• Takeshi Akasaka,
• Kaoru Kobayashi and
• Shigeru Nagase

Beilstein J. Org. Chem. 2023, 19, 1858–1866, doi:10.3762/bjoc.19.138

• otherwise stated. ODCB was distilled over P2O5 under vacuum prior to use. HPLC was performed on an LC-9201 instrument (Japan Analytical Industry Co., Ltd.) by monitoring the UV absorption at 330 nm with toluene as the eluent. Mass spectrometry was performed using a Bruker AUTOFLEX III smart beam with

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• , environmental monitoring, and chemical sensing. Additionally, they can be utilized for biosensing applications by leveraging their ability to absorb and emit light in the near-infrared II range. This range allows for deeper tissue penetration, reduced scattering, and minimized autofluorescence, thereby enabling

• enhanced sensitivity, selectivity, and accuracy in biomarker detection, physiological parameter monitoring, and disease diagnosis. Furthermore, their efficient charge transport properties make them valuable in improving energy storage and conversion systems, including batteries and supercapacitors. The

A deep-red fluorophore based on naphthothiadiazole as emitter with hybridized local and charge transfer and ambipolar transporting properties for electroluminescent devices

• Suangsiri Arunlimsawat,
• Patteera Funchien,
• Pongsakorn Chasing,
• Atthapon Saenubol,
• Taweesak Sudyoadsuk and
• Vinich Promarak

Beilstein J. Org. Chem. 2023, 19, 1664–1676, doi:10.3762/bjoc.19.122

• solution over a period of 2 h, while monitoring the reaction by TLC (CH2Cl2/hexane 1:4). Then, the reaction was quenched with water (100 mL) and the mixture extracted with CH2Cl2 (50 mL × 3). The combined organic layer was washed with water, brine, dried over anhydrous Na2SO4, filtered, and concentrated

Benzoimidazolium-derived dimeric and hydride n-dopants for organic electron-transport materials: impact of substitution on structures, electrochemistry, and reactivity

• Swagat K. Mohapatra,
• Khaled Al Kurdi,
• Samik Jhulki,
• Georgii Bogdanov,
• John Bacsa,
• Maxwell Conte,
• Tatiana V. Timofeeva,
• Seth R. Marder and
• Stephen Barlow

Beilstein J. Org. Chem. 2023, 19, 1651–1663, doi:10.3762/bjoc.19.121

• PC61BM (VI, Figure 7) and that of the 12 derivatives with 6,13-bis(triisopropylsilylethynyl)pentacene (TIPS-pentacene, VII, Figure 7), since we have previously found that these dopant class/SC combinations often react on a timescale suitable for monitoring using UV–vis–NIR spectroscopy (1H derivatives do

Lewis acid-promoted direct synthesis of isoxazole derivatives

• Dengxu Qiu,
• Chenhui Jiang,
• Pan Gao and
• Yu Yuan

Beilstein J. Org. Chem. 2023, 19, 1562–1567, doi:10.3762/bjoc.19.113

• TLC monitoring. Upon completion, the solution was cooled to room temperature and the solvent was removed under vacuum directly. The crude residue was purified by column chromatography on silica gel (ethyl acetate/petroleum ether 40:1) to afford product 3a with 87% yield. Natural products and drug

Selective construction of dispiro[indoline-3,2'-quinoline-3',3''-indoline] and dispiro[indoline-3,2'-pyrrole-3',3''-indoline] via three-component reaction

• Ziying Xiao,
• Fengshun Xu,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1234–1242, doi:10.3762/bjoc.19.91

• structures of the obtained dispiro compounds 3a–m were fully characterized by IR, HRMS, 1H and 13C NMR spectroscopy. Because of the three chiral carbon atoms in the product, several diastereomers might be formed in the reaction. However, TLC monitoring and 1H NMR spectra of the crude products clearly

Synthesis of imidazo[4,5-e][1,3]thiazino[2,3-c][1,2,4]triazines via a base-induced rearrangement of functionalized imidazo[4,5-e]thiazolo[2,3-c][1,2,4]triazines

• Dmitry B. Vinogradov,
• Alexei N. Izmest’ev,
• Angelina N. Kravchenko,
• Yuri A. Strelenko and
• Galina A. Gazieva

Beilstein J. Org. Chem. 2023, 19, 1047–1054, doi:10.3762/bjoc.19.80

• NMR reaction monitoring showed that compound 1d under conditions of excess of KOH in methanol undergoes alkaline hydrolysis along with transesterification of the ester group to give the ring-opened form 6d (Scheme 4), the maximum concentration of which was observed approximately 30 minutes after the

The effect of dark states on the intersystem crossing and thermally activated delayed fluorescence of naphthalimide-phenothiazine dyads

• Liyuan Cao,
• Xi Liu,
• Xue Zhang,
• Jianzhang Zhao,
• Fabiao Yu and
• Yan Wan

Beilstein J. Org. Chem. 2023, 19, 1028–1046, doi:10.3762/bjoc.19.79

• methods (the UV–vis absorption and fluorescence emission spectra, etc.), and herein we also demonstrated that transient absorption spectra (femtosecond/nanosecond transient absorption spectra) can be used to study the TADF properties, for instance by monitoring the dark states. In addition, we show that

First synthesis of acylated nitrocyclopropanes

• Kento Iwai,
• Rikiya Kamidate,
• Khimiya Wada,
• Haruyasu Asahara and
• Nagatoshi Nishiwaki

Beilstein J. Org. Chem. 2023, 19, 892–900, doi:10.3762/bjoc.19.67

• (C), 125.6 (C), 127.3 (C), 128.4 (CH), 128.7 (CH), 128.9 (CH), 129.2 (CH), 131.2 (CH), 139.3 (C), 154.9 (C), 162.5 (C), Two signals were lacked presumably due to overlapping. IR (ATR): 1359, 1593, 1730 cm−1; HRESIMS–TOF (m/z): [M + Na]+ calcd for C19H19NO6, 374.0999; found, 374.1000. Monitoring the

Asymmetric tandem conjugate addition and reaction with carbocations on acylimidazole Michael acceptors

• Brigita Mudráková,
• Renata Marcia de Figueiredo,
• Jean-Marc Campagne and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 881–888, doi:10.3762/bjoc.19.65

• diastereoselectivity. The reaction was also carried out using 3.3 equiv of the electrophile added in one portion. The full conversion of the starting acylimidazole 1a was observed after 30 minutes (TLC monitoring), however, the diastereoselectivity remained low (Table 1, entry 6). Neither an increase nor decrease of

Synthesis of substituted 8H-benzo[h]pyrano[2,3-f]quinazolin-8-ones via photochemical 6π-electrocyclization of pyrimidines containing an allomaltol fragment

• Constantine V. Milyutin,
• Andrey N. Komogortsev,
• Boris V. Lichitsky,
• Mikhail E. Minyaev and
• Valeriya G. Melekhina

Beilstein J. Org. Chem. 2023, 19, 778–788, doi:10.3762/bjoc.19.58

• the model compound 10a in DMSO-d6 solution using 1H NMR monitoring (Figure 1). Thus, the NMR spectrum recorded after UV irradiation (365 nm) for 24 h contained signals of protons of two products along with signals of the starting pyrimidine 10a (Figure 1B). The complete conversion of the starting

• sigmatropic shift step [23][24][25][30]. However, in all cases we failed to detect these intermediates even in the reaction mixture using NMR monitoring. However, in the present communication, for the first time, we managed to isolate and fully characterize a product of this class. Previously, we have shown

• the preparation of polycyclic benzo[h]pyrano[2,3-f]quinazolines was elaborated. The method comprises the preliminary photoreaction of the starting compounds and the conclusive dehydration under the action of CDI. 1H NMR monitoring of the photoreaction of compound 10a under UV irradiation (365 nm) in