Synthesis of imidazo[1,2-a]pyridine-containing peptidomimetics by tandem of Groebke–Blackburn–Bienaymé and Ugi reactions

• Oleksandr V. Kolomiiets,
• Alexander V. Tsygankov,
• Maryna N. Kornet,
• Aleksander A. Brazhko,
• Vladimir I. Musatov and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2023, 19, 727–735, doi:10.3762/bjoc.19.53

• ]pyridine and peptidomimetic moieties as pharmacophores with four diversity points introduced from readily available starting materials, including scaffold diversity. A small focused compound library of 20 Ugi products was prepared and screened for antibacterial activity. Keywords: Groebke–Blackburn

• –Bienaymé reaction; imidazo[1,2-a]pyridine; isocyanide; multicomponent reaction; peptidomimetic; Ugi reaction; Introduction The use of isocyanide multicomponent reactions (IMCR) to prepare biologically active compounds is one of the most promising tools in modern organic and medicinal chemistry. Therefore

• viruses, including influenza, SARS-CoV, and SARS-CoV-2, are becoming extremely important. For example, peptidomimetic structures such as lopinavir and ritonavir can inhibit 3CL protease, which is one of the major protein structures encoded by the SARS-CoV-2 genome [20]. Therefore, it is necessary to pay

Derivatives of benzo-1,4-thiazine-3-carboxylic acid and the corresponding amino acid conjugates

• Péter Kisszékelyi,
• Tibor Peňaška,
• Klára Stankovianska,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 1195–1202, doi:10.3762/bjoc.18.124

• protease inhibitors. Given the potential usefulness of the benzothiazine scaffold as a biologically active unit and the peptidomimetic nature of many SARS-CoV-2 protease inhibitors [35], we decided to investigate the viability of attaching a 4H-benzo[b][1,4]thiazine-3-carboxylic core to amino acids

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation

• Maxime Pypec,
• Laurent Jouffret,
• Claude Taillefumier and
• Olivier Roy

Beilstein J. Org. Chem. 2022, 18, 845–854, doi:10.3762/bjoc.18.85

• the crystal, reminiscent to that found in helical PPII-like structures. Interestingly, peptoids containing N-(methylamino)amides are soluble in water and are capable of forming hydrogen bonds, two interesting characteristics for designing peptidomimetic molecules or biomaterials. Additional efforts

pH- and concentration-dependent supramolecular self-assembly of a naturally occurring octapeptide

• Goutam Ghosh and
• Gustavo Fernández

Beilstein J. Org. Chem. 2020, 16, 2017–2025, doi:10.3762/bjoc.16.168

• ], the ease of materials preparation, and the versatility in tuning their secondary structures (e.g., β-sheet and α-helix) by designing the amino acid sequence [15]. Peptidomimetic foldamers designed from nonnatural amino acid sequences are also well characterized systems due to their propensity to form

Facile synthesis of 7-alkyl-1,2,3,4-tetrahydro-1,8-naphthyridines as arginine mimetics using a Horner–Wadsworth–Emmons-based approach

• Rhys A. Lippa,
• John A. Murphy and
• Tim N. Barrett

Beilstein J. Org. Chem. 2020, 16, 1617–1626, doi:10.3762/bjoc.16.134

• ; Introduction Tetrahydronaphthyridines are prominent in peptidomimetic pharmaceuticals as arginine mimetics and they are widely used in Arg–Gly–Asp (RGD) peptide mimetics such as αv integrin inhibitors [1]. Tetrahydronaphthyridines represent less basic but more permeable alternatives to arginine (pKa ≈ 7 versus

Synthesis of new asparagine-based glycopeptides for future scanning tunneling microscopy investigations

• Laura Sršan and
• Thomas Ziegler

Beilstein J. Org. Chem. 2020, 16, 888–894, doi:10.3762/bjoc.16.80

• the synthesis of structurally defined peptidomimetic libraries for further biological and medicinal investigation [4][8]. Recently, the characterization of heterogeneous mixtures of glycoconjugates was simplified by the development of novel MS-supported methods [9][10][11]. Nevertheless, the

Synthesis of novel sulfide-based cyclic peptidomimetic analogues to solonamides

• José Brango-Vanegas,
• Luan A. Martinho,
• Lucinda J. Bessa,
• Andreanne G. Vasconcelos,
• Alexandra Plácido,
• Alex L. Pereira,
• José R. S. A. Leite and
• Angelo H. L. Machado

Beilstein J. Org. Chem. 2019, 15, 2544–2551, doi:10.3762/bjoc.15.247

• , 420013, Porto, Portugal Bioprospectum, Lda, UPTEC, 4200135, Porto, Portugal Campus de Ceilândia, Universidade de Brasília, Centro Metropolitano, 72220-275, Ceilândia Sul, Ceilândia, DF, Brazil 10.3762/bjoc.15.247 Abstract Eight new sulfide-based cyclic peptidomimetic analogues of solonamides A and B

Doebner-type pyrazolopyridine carboxylic acids in an Ugi four-component reaction

• Maryna V. Murlykina,
• Oleksandr V. Kolomiets,
• Maryna M. Kornet,
• Yana I. Sakhno,
• Sergey M. Desenko,
• Victoriya V. Dyakonenko,
• Svetlana V. Shishkina,
• Oleksandr A. Brazhko,
• Vladimir I. Musatov,
• Alexander V. Tsygankov,
• Erik V. Van der Eycken and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2019, 15, 1281–1288, doi:10.3762/bjoc.15.126

• convergent and versatile manner using diversity generation strategies: combination of two multicomponent reactions and conditions-based divergence strategy. The target products contain as pharmacophores pyrazolopyridine and peptidomimetic moieties with four points of diversity introduced from readily

• 70 °C) and a small focused library of 23 Ugi products was created. The target compounds containing two pharmacophore pyrazolopyridine and peptidomimetic moieties were screened for their antibacterial activity and demonstrated weak antibacterial effect. Molecular structure of N-(2-(tert-butylamino)-1

Steroid diversification by multicomponent reactions

• Leslie Reguera,
• Cecilia I. Attorresi,
• Javier A. Ramírez and
• Daniel G. Rivera

Beilstein J. Org. Chem. 2019, 15, 1236–1256, doi:10.3762/bjoc.15.121

• -4CR, which is indeed one of the MCRs of major incidence in the field of steroid chemistry. Rivera and co-workers were the first to employ this 4CR for the conjugation of amino acids to steroids [19] as part of a general program for the synthesis of peptidomimetic–steroid hybrids [20][21]. As shown in

• the installation of peptidomimetic chains at different positions of the steroidal skeleton, which enabled rigidifying the pendant peptide chains [29]. Scheme 7 depicts two selected examples of this work, showing the possibility of incorporating isocyanide groups at furostanic and cholanic steroids and

• -diketopiperazines based on a diastereoselective Ugi-4CR with an androstanic aldehyde derived from dehydroepiandrosterone (DHEA) [16]. Multicomponent synthesis of a heterocycle–steroid hybrid using a ketosteroid as carbonyl component [18]. Synthesis of peptidomimetic–steroid hybrids using the Ugi-4CR with

Applications of organocatalysed visible-light photoredox reactions for medicinal chemistry

• Michael K. Bogdos,
• Emmanuel Pinard and
• John A. Murphy

Beilstein J. Org. Chem. 2018, 14, 2035–2064, doi:10.3762/bjoc.14.179

• medicinal chemistry. This is a reflection of the tendency of synthetic bioactive molecules to exhibit peptidomimetic properties. Though there is a vast number of procedures that generate amide bonds, an interesting approach is taken by Leow, who has demonstrated the synthesis of amides through the oxidative

Synthesis and biological evaluation of RGD and isoDGR peptidomimetic-α-amanitin conjugates for tumor-targeting

• Lizeth Bodero,
• Paula López Rivas,
• Barbara Korsak,
• Torsten Hechler,
• Andreas Pahl,
• Christoph Müller,
• Daniela Arosio,
• Luca Pignataro,
• Cesare Gennari and
• Umberto Piarulli

Beilstein J. Org. Chem. 2018, 14, 407–415, doi:10.3762/bjoc.14.29

• α-amanitin activity on the targeted cells. An alternative approach to the antibody targeted therapy is represented by small molecule–drug conjugates (SMDCs), where the small molecule – usually a peptide or peptidomimetic receptor ligand – avoids the drawbacks of ADCs such as high manufacturing costs

A speedy route to sterically encumbered, benzene-fused derivatives of privileged, naturally occurring hexahydropyrrolo[1,2-b]isoquinoline

• Olga Bakulina,
• Alexander Ivanov,
• Vitalii Suslonov,
• Dmitry Dar’in and
• Mikhail Krasavin

Beilstein J. Org. Chem. 2017, 13, 1413–1424, doi:10.3762/bjoc.13.138

• non-classical inputs for the Joullié–Ugi reaction and for subsequent preparation [28] of sterically encumbered, constrained peptidomimetic frameworks. Diversely substituted indolenines 9 are easy to prepare via the Fischer indole synthesis [26] and their use in the CCR can be expected to result in

An eco-compatible strategy for the diversity-oriented synthesis of macrocycles exploiting carbohydrate-derived building blocks

• Sushil K. Maurya and
• Rohit Rana

Beilstein J. Org. Chem. 2017, 13, 1106–1118, doi:10.3762/bjoc.13.110

• transition-metal-catalyzed coupling reactions [19]. Recently, ring-closing alkyne metathesis (RCAM) [20][21] and ring closing metathesis (RCM) [22][23][24][25][26][27][28][29][30][31] have emerged as very powerful tools for macrocyclization including for the preparation of peptidomimetic [17][18][32

New tricks of well-known aminoazoles in isocyanide-based multicomponent reactions and antibacterial activity of the compounds synthesized

• Maryna V. Murlykina,
• Maryna N. Kornet,
• Sergey M. Desenko,
• Svetlana V. Shishkina,
• Oleg V. Shishkin,
• Aleksander A. Brazhko,
• Vladimir I. Musatov,
• Erik V. Van der Eycken and
• Valentin A. Chebanov

Beilstein J. Org. Chem. 2017, 13, 1050–1063, doi:10.3762/bjoc.13.104

• , it has been acknowledged that the combination of two privileged scaffolds in a single molecule (e.g., the combination of a peptidomimetic structure with an azole fragment [59]) potentially creates more active, new entities with unusual bioproperties [20][60][61]. In addition, the application of

Three-component synthesis of highly functionalized aziridines containing a peptide side chain and their one-step transformation into β-functionalized α-ketoamides

• Lena Huck,
• Juan F. González,
• Elena de la Cuesta and
• J. Carlos Menéndez

Beilstein J. Org. Chem. 2016, 12, 1772–1777, doi:10.3762/bjoc.12.166

• for the preparation of peptides [2][3] and the synthesis of peptide-like compounds comprising the aziridine motif [4][5]. Furthermore, the incorporation of an electrophilic aziridine moiety in peptide or peptidomimetic frameworks is an interesting strategy for the design of active site-directed drugs

Diastereoselective Ugi reaction of chiral 1,3-aminoalcohols derived from an organocatalytic Mannich reaction

• Samantha Caputo,
• Andrea Basso,
• Lisa Moni,
• Renata Riva,
• Valeria Rocca and
• Luca Banfi

Beilstein J. Org. Chem. 2016, 12, 139–143, doi:10.3762/bjoc.12.15

• /epimerization can again be an issue in special cases [24]. However, the use of amines as chiral auxiliaries has been seldom exploited in peptidomimetic synthesis [16][25][26] because the need to remove the auxiliary reduces the number of diversity inputs and increases the number of synthetic steps. From the

The Shono-type electroorganic oxidation of unfunctionalised amides. Carbon–carbon bond formation via electrogenerated N-acyliminium ions

• Alan M. Jones and
• Craig E. Banks

Beilstein J. Org. Chem. 2014, 10, 3056–3072, doi:10.3762/bjoc.10.323

• such as the nucleobases: protected cytosine, guanine 87, adenine, and thymine to afford azanucleoside products such as 88 (Scheme 20). The use of the Shono-type electrooxidation in peptide and peptidomimetic chemistry The preparation of a bridged tricyclic analogue to induce an α-helix conformation in

• peptidomimetic of substance P [93]. Substance P is an 11 amino acid peptide that contains a phenylalanine7–phenylalanine8 linkage (Phe7–Phe8) and a member of the mammalian tachykinin family of peptides implicated in diseases such as arthritis, asthma, inflammatory bowel disease and depression. Electrosynthesis

• synthetically challenging aza-nucleosides employing an electrochemical step [88]. Synthesis of a bridged tricyclic diproline analogue 93 that induces α-helix conformation into linear peptides [90]. Synthesis of (i) a peptidomimetic and (ii) a functionalised peptide from silyl electroauxiliary precursors [91

Recent advances in the electrochemical construction of heterocycles

• Robert Francke

Beilstein J. Org. Chem. 2014, 10, 2858–2873, doi:10.3762/bjoc.10.303

• 1.95–2.10 V vs. Ag/AgCl, and their oxidation becomes therefore less selective with increasing electron-donating character of functional groups attached to the peptide. In this context, the introduction of electroauxiliaries to the peptidomimetic structures and their use for site-selective oxidation was

Asymmetric Ugi 3CR on isatin-derived ketimine: synthesis of chiral 3,3-disubstituted 3-aminooxindole derivatives

• Giordano Lesma,
• Fiorella Meneghetti,
• Alessandro Sacchetti,
• Mattia Stucchi and
• Alessandra Silvani

Beilstein J. Org. Chem. 2014, 10, 1383–1389, doi:10.3762/bjoc.10.141

• additions or spiroannulation [2][3]. Oxindoles represent a common structural element in various natural products and biologically active compounds. Diverse oxindole derivatives act as non-peptide scaffolds [4] in peptidomimetic chemistry, either as enzyme inhibitors or as ligands of G-protein-coupled

• methodologies to access chiral 3,3-disubstituted 3-aminooxindoles [16][17][18][19], we looked at isocyanide-based multicomponent reactions as a possible efficient tool to quickly prepare oxindole-based peptidomimetic compounds [20][21][22]. Despite the synthetic efficiency of the Ugi reaction and its wide

Stereocontrolled synthesis of 5-azaspiro[2.3]hexane derivatives as conformationally “frozen” analogues of L-glutamic acid

• Beatrice Bechi,
• David Amantini,
• Cristina Tintori,
• Maurizio Botta and
• Romano di Fabio

Beilstein J. Org. Chem. 2014, 10, 1114–1120, doi:10.3762/bjoc.10.110

• amino acid derivatives 27a and 27c represent useful unnatural amino acid derivatives for both peptidomimetic synthesis and as ligands of the plethora of glutamate receptors. Glutamate receptor ligands. Mechanism for the attack of the carbene intermediate to the olefin moiety 18. Representation of the

Molecular architecture with carbohydrate functionalized β-peptides adopting 3₁₄-helical conformation

• Nitin J. Pawar,
• Navdeep S. Sidhu,
• George M. Sheldrick,
• Dilip D. Dhavale and
• Ulf Diederichsen

Beilstein J. Org. Chem. 2014, 10, 948–955, doi:10.3762/bjoc.10.93

• -peptides are especially of interest as peptidomimetic foldamers wherein the presence of β-amino acids rendered them to adopt a variety of conformational stable secondary structures, even with short peptide sequences [4][5][6]. Amongst them the 314-helix is the most significant helical secondary structure

Conformation of dehydropentapeptides containing four achiral amino acid residues – controlling the role of L-valine

• Michał Jewgiński,
• Joanna Krzciuk-Gula,
• Maciej Makowski,
• Rafał Latajka and
• Paweł Kafarski

Beilstein J. Org. Chem. 2014, 10, 660–666, doi:10.3762/bjoc.10.58

• determination of the correlation between the position of the L-Val residue in the peptide sequence and its conformation would be important and crucial for the rational design of the sequence of the peptidomimetic foldamers. Results and Discussion Structural and conformational studies NMR investigations were

Isocyanide-based multicomponent reactions towards cyclic constrained peptidomimetics

• Gijs Koopmanschap,
• Eelco Ruijter and
• Romano V.A. Orru

Beilstein J. Org. Chem. 2014, 10, 544–598, doi:10.3762/bjoc.10.50

• peptidomimetic design, the incorporation of N-protected aldehydes 4 (Scheme 2) is of great importance since deprotection of the α-adduct 5 allows acyl-migration and give access to α-hydroxy-β-amino amide derivatives 7 that possess important biological properties. This Passerini–amine deprotection–acyl migration

• -formation of the imine or the use of bifunctional inputs (e.g. amino acids) can reduce this Ugi-4CR to an Ugi-3CR. In particular, the Ugi reaction with bifunctional inputs is called an Ugi-four-center-three-component reaction (U-4C-3CR) and has been extensively applied in peptidomimetic synthesis [21][22

• induce secondary structures such as β-turns, β-hairpins in β-sheets and α-helices [141]. Therefore, DKPs are often used as peptidomimetic building blocks. A more detailed review of diketopiperazines is published by Borthwick and Piarulli [141][142]. Standard multicomponent reactions towards DKPs have the

Preparation and ring-opening reactions of N-diphenylphosphinyl vinyl aziridines

• Ashley N. Jarvis,
• Andrew B. McLaren,
• Helen M. I. Osborn and
• Joseph Sweeney

Beilstein J. Org. Chem. 2013, 9, 852–859, doi:10.3762/bjoc.9.98

• ). (2-Carboxyvinyl)aziridines are particularly useful reagents due, amongst other properties, to their facile conversion into a range of peptidomimetic candidates [41][42][43][44]. In an attempt to use our method to deliver these trifunctional aziridines, we reacted the lithium anion derived from methyl

A peptidic hydrogel that may behave as a “Trojan Horse”

• Nicola Castellucci,
• Giorgio Sartor,
• Natalia Calonghi,
• Carola Parolin,
• Giuseppe Falini and
• Claudia Tomasini

Beilstein J. Org. Chem. 2013, 9, 417–424, doi:10.3762/bjoc.9.44

• the cell membrane surface than does the β-sheet conformation [5]. Low-molecular-weight hydrogelators (LMWHGs) are defined as small molecules that self-assemble into long fibers, resulting in the formation of a gel [6][7][8][9][10]. Recently, several examples of peptide or peptidomimetic gelators have