Synthesis and characterization of bis(4-amino-2-bromo-6-methoxy)azobenzene derivatives

• David Martínez-López,
• Amirhossein Babalhavaeji,
• Diego Sampedro and
• G. Andrew Woolley

Beilstein J. Org. Chem. 2019, 15, 3000–3008, doi:10.3762/bjoc.15.296

• substituent in an attempt to enhance water solubility. Late-stage functionalization of the ortho-position was carried out through a palladium(II)-catalyzed C–H activation, resulting in ortho-brominated azobenzenes [21]. Photochemical characterization Despite the morpholino substituent, compound 4 was found to

• half-life of 6.5 minutes was obtained at room temperature. To enhance the compounds’ water solubility, the morpholino substituents were replaced by piperazino groups because the secondary amino groups on the piperazino units were expected to have pKa values near 10 [22], and so should be protonated at

Design, synthesis and investigation of water-soluble hemi-indigo photoswitches for bioapplications

• Daria V. Berdnikova

Beilstein J. Org. Chem. 2019, 15, 2822–2829, doi:10.3762/bjoc.15.275

• that allowed to obtain an RNA-binding hemi-indigo derivative with photoswitchable fluorescent properties. Keywords: hemi-indigo; molecular switches; photochromism; photoswitching; visible light; water solubility; Introduction The application of organic photochromes in biological systems is fraught

• with their poor solubility and reduced photoswitching efficiency in aqueous medium. In many cases, approaches to improve the water solubility by chemical modification of the photochromic scaffolds are not straightforward because the introduction of substituents often interferes with the desired

• photoswitching of hemi-indigo in water. At the same time, the presence of a strong electron-donating dimethylamino group at this position is unfavorable for the photoswitching in water. It was also shown that the introduction of a second methoxy group in the 3-position of the phenyl ring improves the water

Plasma membrane imaging with a fluorescent benzothiadiazole derivative

• Pedro H. P. R. Carvalho,
• Jose R. Correa,
• Karen L. R. Paiva,
• Daniel F. S. Machado,
• Jackson D. Scholten and
• Brenno A. D. Neto

Beilstein J. Org. Chem. 2019, 15, 2644–2654, doi:10.3762/bjoc.15.257

• and by poor performances related to most of them. Therefore, many studies are still based on the use of WGA [16] (wheat germ agglutinin) or membrane proteins bearing fluorescent protein tags [11]. Water solubility is another issue that has to be considered. For the development of new fluorogenic dyes

• -soluble BTD fluorophore BTD-4APTEG was developed and applied as selective probe for bioimaging and stained plasma membranes selectively in the tested cells lines. The features envisaged for the synthesis of the structure proved to be capable of granting the dye water solubility, good photostability and

Reversible switching of arylazopyrazole within a metal–organic cage

• Anton I. Hanopolskyi,
• Soumen De,
• Michał J. Białek,
• Yael Diskin-Posner,
• Liat Avram,
• Moran Feller and
• Rafal Klajn

Beilstein J. Org. Chem. 2019, 15, 2398–2407, doi:10.3762/bjoc.15.232

• coordination. Owing to its high water solubility, the cage can solubilize the E isomer of arylazopyrazole, which, by itself, is not soluble in water. NMR spectroscopy and X-ray crystallography have independently demonstrated that each cage can encapsulate two molecules of E-arylazopyrazole. UV-induced

• complex of 2 and tetra-o-fluoroazobenzene yields a 1:1 mixture of Z2 and free Z-azobenzene, which is insoluble in water and precipitates from the solution [49]. The Z isomer of 1, however, has much higher water solubility and, following expulsion from the cage, can remain stable in solution. To verify

• reported azobenzene complex, the photoisomerization was not accompanied by precipitation of the released Z-arylazopyrazole, which has good water solubility. The expulsion of the Z isomer was confirmed by diffusion-ordered NMR spectroscopy, which also showed that the released and the encapsulated Z

Targeted photoswitchable imaging of intracellular glutathione by a photochromic glycosheet sensor

• Xianzhi Chai,
• Hai-Hao Han,
• Yi Zang,
• Jia Li,
• Xiao-Peng He,
• Junji Zhang and
• He Tian

Beilstein J. Org. Chem. 2019, 15, 2380–2389, doi:10.3762/bjoc.15.230

• precise outputs can be obtained for targeted analytes even at low concentrations. Though promising, common “photochromophore–fluorophore”-type sensors require elaborate designs to integrate multifunctionality (e.g., photoswitching, fluorescence sensing, targetability, water solubility, etc.) into one

• Glyco-DTE. More importantly, the β-ᴅ-galactoside cell-targeting moiety linked with Glyco-DTE forms a glyco-array on the MnO2 nanosheets that not only enhances the water solubility but also the cell targetability of the hybrid system towards HepG2 cell lines [25][26]. Therefore, by simply incorporating

Synthesis of a dihalogenated pyridinyl silicon rhodamine for mitochondrial imaging by a halogen dance rearrangement

• Jessica Matthias,
• Thines Kanagasundaram,
• Klaus Kopka and
• Carsten S. Kramer

Beilstein J. Org. Chem. 2019, 15, 2333–2343, doi:10.3762/bjoc.15.226

• rhodamines have been published. Dye 13 (Scheme 1, Table 1, entry 13) shows good water solubility, has a quantum yield of 0.12 and offers intrinsic targeting ability to lysosomes [35]. Pyridine silicon rhodamine 14 (Table 1, entry 14) has an improved quantum yield of 0.48 [32], presumably due to the

Fluorinated azobenzenes as supramolecular halogen-bonding building blocks

• Esther Nieland,
• Oliver Weingart and
• Bernd M. Schmidt

Beilstein J. Org. Chem. 2019, 15, 2013–2019, doi:10.3762/bjoc.15.197

• reaction and as organocatalysts in Diels–Alder reactions [27]. The group of Metrangolo also reported halogen bonding-promoted catalysis in water by exploiting a halogen bonding amino acid, which combines excellent donor properties with good water solubility [28], in addition to their seminal contributions

Reversible end-to-end assembly of selectively functionalized gold nanorods by light-responsive arylazopyrazole–cyclodextrin interaction

• Maximilian Niehues,
• Patricia Tegeder and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2019, 15, 1407–1415, doi:10.3762/bjoc.15.140

• 20-fold higher binding constant to β-CD (6.5 × 104 M−1) [32] than unmodified azobenzenes (2.5 × 103 M−1) [33]. Therefore, the competitive binding of CTAB to β-CD has been applied previously, e.g., in sensing applications [34] or to enhance the water solubility of a cyclodextrin polymer [35]. On

Complexation of a guanidinium-modified calixarene with diverse dyes and investigation of the corresponding photophysical response

• Yu-Ying Wang,
• Yong Kong,
• Zhe Zheng,
• Wen-Chao Geng,
• Zi-Yi Zhao,
• Hongwei Sun and
• Dong-Sheng Guo

Beilstein J. Org. Chem. 2019, 15, 1394–1406, doi:10.3762/bjoc.15.139

• most common high-performance fluorescent reagents routinely used in biological research for labeling and detection. It is characterized by high absorptivity, excellent brightness, a relatively good water solubility and possesses ACQ properties. In our previous work, we have reported the complexation

Self-assembly behaviors of perylene- and naphthalene-crown macrocycle conjugates in aqueous medium

• Xin Shen,
• Bo Li,
• Tiezheng Pan,
• Jianfeng Wu,
• Yangxin Wang,
• Jie Shang,
• Yan Ge,
• Lin Jin and
• Zhenhui Qi

Beilstein J. Org. Chem. 2019, 15, 1203–1209, doi:10.3762/bjoc.15.117

• ]. However, we recently found that benzo-21-crown-7 (B21C7) displays impressive high water solubility in comparison with other macrocyclic hosts [55]. Moreover, the conjugation of B21C7s to the well-known supramolecular BTA core leads to the observation of special topological effects on ion selectivity in

Insertion of [1.1.1]propellane into aromatic disulfides

• Robin M. Bär,
• Gregor Heinrich,
• Martin Nieger,
• Olaf Fuhr and
• Stefan Bräse

Beilstein J. Org. Chem. 2019, 15, 1172–1180, doi:10.3762/bjoc.15.114

• can lead to improved properties, e.g., increased water-solubility of drug candidates [2] or the electronical separation of a photoswitch and a chromophore [6]. Often used moieties for these kinds of applications are triptycenes, cubanes, bicyclo[2.2.2]octanes (BCOs) and bicyclo[1.1.1]pentanes (BCPs

Photochemical generation of the 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO) radical from caged nitroxides by near-infrared two-photon irradiation and its cytocidal effect on lung cancer cells

• Ayato Yamada,
• Manabu Abe,
• Yoshinobu Nishimura,
• Shoji Ishizaka,
• Masashi Namba,
• Taku Nakashima,
• Kiyofumi Shimoji and
• Noboru Hattori

Beilstein J. Org. Chem. 2019, 15, 863–873, doi:10.3762/bjoc.15.84

• 2a induced cancer cell death in vitro, although no in vivo study was performed because of the low water solubility of 2a. At this point, we cannot rule out generate of ROS by photosensitization of the chromophore in the presence of O2 for the cytotoxicity. Conclusion In the present study, novel caged

Aqueous olefin metathesis: recent developments and applications

• Valerio Sabatino and
• Thomas R. Ward

Beilstein J. Org. Chem. 2019, 15, 445–468, doi:10.3762/bjoc.15.39

• significantly improve the water solubility and facilitate the removal of ruthenium residues from reaction mixtures [52][59]. The majority of such ruthenium complexes can easily be removed, especially for the metathesis of water-insoluble substrates, as demonstrated by Grela and co-workers for the RCM of

LCST phase behavior of benzo-21-crown-7 with different alkyl chains

• Yan Deng,
• Xing Li,
• Qiao Zhang,
• Zheng Luo,
• Chengyou Han and
• Shengyi Dong

Beilstein J. Org. Chem. 2019, 15, 437–444, doi:10.3762/bjoc.15.38

• between the amine groups and isocyanate units (yields, 44.6–76.5%), or between hydroxy groups and isocyanate units (yields, 57.4–84.9%), respectively. We also investigated the role of linkages in LCST behavior by the introduction of urea-based and carbamate-based linkers. The water solubility of the

• water solubility of 3a and 5a is 26.2 and 26.8 mg/mL, respectively. In addition, different alkyl chains exert a great effect on the water solubility. As shown in Figure 2a and Table S1 (Supporting Information File 1), it is quite obvious that the longer the alkyl chain is, the lower is the water

• solubility. When the alkyl chains contain seven CH2 units, the crown ethers become poorly soluble in water (the solubility is lower than 0.5 mg/mL for 3e), indicating the hydrophobic effect of long alkyl chains. The nature of the linker unit is also closely related to the water solubility: in general, crown

Olefin metathesis catalysts embedded in β-barrel proteins: creating artificial metalloproteins for olefin metathesis

• Daniel F. Sauer,
• Johannes Schiffels,
• Takashi Hayashi,
• Ulrich Schwaneberg and
• Jun Okuda

Beilstein J. Org. Chem. 2018, 14, 2861–2871, doi:10.3762/bjoc.14.265

• aqueous environments, water solubility is also essential [16][17][18]. A promising approach is the embedment of the GH-type catalyst into well-defined protein scaffolds [19]. The combination of an engineered protein with a synthetic metal catalyst leads to artificial metalloproteins [20][21][22][23]. In

The design and synthesis of an antibacterial phenothiazine–siderophore conjugate

• Abed Tarapdar,
• James K. S. Norris,
• Oliver Sampson,
• Galina Mukamolova and
• James T. Hodgkinson

Beilstein J. Org. Chem. 2018, 14, 2646–2650, doi:10.3762/bjoc.14.242

• -cleavable linker. A polyethylene glycol (PEG) linker was selected as PEG linkers demonstrate enhanced water solubility in comparison to alkyl chain linkers. We then had to make a decision on the position of attachment for the PEG linker to compound 1. For siderophore conjugates, it is crucial that the

• phenothiazine 5 was isolated after removal of the Boc protecting group in TFA. Initial attempts at aqueous work-up conditions to isolate the free base resulted in lower isolated yields of 5 due to its high water solubility, and it was decided 5 would be progressed further as the TFA salt avoiding aqueous work

Synthesis of a water-soluble 2,2′-biphen[4]arene and its efficient complexation and sensitive fluorescence enhancement towards palmatine and berberine

• Xiayang Huang,
• Xinghua Zhang,
• Tianxin Qian,
• Junwei Ma,
• Lei Cui and
• Chunju Li

Beilstein J. Org. Chem. 2018, 14, 2236–2241, doi:10.3762/bjoc.14.198

• guests exhibit a significant fluorescence intensity enhancement and the intensity is strong enough to be distinguished by the naked eye. The easy accessibility, good water-solubility and nice binding properties make 2,2’-CBP4 be applicable in the biomedical field, for example, chemical sensors, drug

Synthesis of 9-arylalkynyl- and 9-aryl-substituted benzo[b]quinolizinium derivatives by Palladium-mediated cross-coupling reactions

• Siva Sankar Murthy Bandaru,
• Darinka Dzubiel,
• Heiko Ihmels,
• Mohebodin Karbasiyoun,
• Mohamed M. A. Mahmoud and
• Carola Schulzke

Beilstein J. Org. Chem. 2018, 14, 1871–1884, doi:10.3762/bjoc.14.161

• ][65][66]. The effect of the donor substituent on the emission quenching was supported by the strong increase of the emission quantum yield of 2c upon protonation of the amino group, that is, by the transformation of the donor to an acceptor substituent (Figure 5) [34]. Considering the water solubility

Water-soluble SNS cationic palladium(II) complexes and their Suzuki–Miyaura cross-coupling reactions in aqueous medium

• Alphonse Fiebor,
• Richard Tia,
• Banothile C. E. Makhubela and
• Henok H. Kinfe

Beilstein J. Org. Chem. 2018, 14, 1859–1870, doi:10.3762/bjoc.14.160

• bases including pyridine, Et3N, KOH, K2CO3 and Cs2CO3 were then evaluated. All except Et3N provided the expected biaryl 23a in comparable and excellent yields (Table 2, entries 4–8). The poor performance of Et3N as base in the reaction could be due to its low water solubility. KOH as a common laboratory

Oligonucleotide analogues with cationic backbone linkages

• Melissa Meng and
• Christian Ducho

Beilstein J. Org. Chem. 2018, 14, 1293–1308, doi:10.3762/bjoc.14.111

• moderate water solubility and peptide-like folding properties [9] are hurdles for their biological application. As an alternative strategy, the (deoxy)ribose part of the backbone has been retained and only some of the internucleotide phosphate diesters have been selectively replaced by electroneutral

An overview of recent advances in duplex DNA recognition by small molecules

• Sayantan Bhaduri,
• Nihar Ranjan and
• Dev P. Arya

Beilstein J. Org. Chem. 2018, 14, 1051–1086, doi:10.3762/bjoc.14.93

On the design principles of peptide–drug conjugates for targeted drug delivery to the malignant tumor site

• Eirinaios I. Vrettos,
• Gábor Mező and
• Andreas G. Tzakos

Beilstein J. Org. Chem. 2018, 14, 930–954, doi:10.3762/bjoc.14.80

• low water-solubility and stability led to the formulation of various new analogs with the same mechanism of action. The two most progressed analogs of CPT are topotecan and irinotecan. Topotecan (hycamtin) has been approved by the FDA for the treatment of ovarian and cervical cancer, as also small

Fluorogenic PNA probes

• Tirayut Vilaivan

Beilstein J. Org. Chem. 2018, 14, 253–281, doi:10.3762/bjoc.14.17

Halogen-containing thiazole orange analogues – new fluorogenic DNA stains

• Aleksey A. Vasilev,
• Meglena I. Kandinska,
• Stanimir S. Stoyanov,
• Stanislava B. Yordanova,
• David Sucunza,
• Juan J. Vaquero,
• Obis D. Castaño,
• Stanislav Baluschev and
• Silvia E. Angelova

Beilstein J. Org. Chem. 2017, 13, 2902–2914, doi:10.3762/bjoc.13.283

• solvents in organic synthesis. The reaction in water as a solvent provided moderate yields (procedures B1 and B2), but the subsequent scale-up of these reactions could be favorable on using intermediates with better water solubility. The best reaction yields for TO-7Cl were obtained on using procedure C1

CF₃SO₂X (X = Na, Cl) as reagents for trifluoromethylation, trifluoromethylsulfenyl-, -sulfinyl- and -sulfonylation and chlorination. Part 2: Use of CF₃SO₂Cl

• Hélène Chachignon,
• Hélène Guyon and
• Dominique Cahard

Beilstein J. Org. Chem. 2017, 13, 2800–2818, doi:10.3762/bjoc.13.273

• -trifluoromethylated analogues in the presence of trimethylphosphine, with moderate to excellent yields (Scheme 33). The higher nucleophilicity of trimethylphosphine versus triphenylphosphine and the water solubility of trimethylphosphine oxide byproducts were essential elements in choosing the reducing agent. Both